mRNA_Ecto-sp9_F_contig11399.1193.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11399.1193.1
Unique NamemRNA_Ecto-sp9_F_contig11399.1193.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11399.1193.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ11_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.960e-34
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 1 
Query:    1 VLYSLFLWQIKPLFSHLMEAGSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTREDEEDTLGDRTLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRDDDE 351
            VLYSLFLWQIKPLFSHLMEAGSSAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK REDEE+TLGDRTLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRR+D+E
Sbjct:  305 VLYSLFLWQIKPLFSHLMEAGSSAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAREDEENTLGDRTLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRNDEE 421
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BLAST of mRNA_Ecto-sp9_F_contig11399.1193.1 vs.
Match: SCD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.480e-30
Identity = 109/115 (94.78%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:    1 VLYSLFLWQIKPLFSHLMEAGSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKT-REDEEDTLGDRTLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRD 342
            VLYSLFLWQIKPLFSHLMEAGSSAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +EDEEDTLGD TLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRD
Sbjct:  734 VLYSLFLWQIKPLFSHLMEAGSSAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDEEDTLGDGTLEVEEITEEKVQEVVRYRDDLVEVLRAMLAMHLYPRRD 848
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11399.1193.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.960e-3495.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
SCD4.480e-3094.78domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11399contigEcto-sp9_F_contig11399:1265..3053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue8.1e-29
Seed eggNOG ortholog2880.D7FZ11
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size379
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11399.1193.1prot_Ecto-sp9_F_contig11399.1193.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11399 1266..3053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928387.1739964-CDS-Ecto-sp9_F_contig11399:1265..13621622928387.1739964-CDS-Ecto-sp9_F_contig11399:1265..1362Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 1266..1362 -
1692277854.5467823-CDS-Ecto-sp9_F_contig11399:1265..13621692277854.5467823-CDS-Ecto-sp9_F_contig11399:1265..1362Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 1266..1362 -
1622928387.1912022-CDS-Ecto-sp9_F_contig11399:1838..19021622928387.1912022-CDS-Ecto-sp9_F_contig11399:1838..1902Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 1839..1902 -
1692277854.5601275-CDS-Ecto-sp9_F_contig11399:1838..19021692277854.5601275-CDS-Ecto-sp9_F_contig11399:1838..1902Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 1839..1902 -
1622928387.2018552-CDS-Ecto-sp9_F_contig11399:2375..25011622928387.2018552-CDS-Ecto-sp9_F_contig11399:2375..2501Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 2376..2501 -
1692277854.5702553-CDS-Ecto-sp9_F_contig11399:2375..25011692277854.5702553-CDS-Ecto-sp9_F_contig11399:2375..2501Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 2376..2501 -
1622928387.2135298-CDS-Ecto-sp9_F_contig11399:2962..30531622928387.2135298-CDS-Ecto-sp9_F_contig11399:2962..3053Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 2963..3053 -
1692277854.5803401-CDS-Ecto-sp9_F_contig11399:2962..30531692277854.5803401-CDS-Ecto-sp9_F_contig11399:2962..3053Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11399 2963..3053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11399.1193.1

>prot_Ecto-sp9_F_contig11399.1193.1 ID=prot_Ecto-sp9_F_contig11399.1193.1|Name=mRNA_Ecto-sp9_F_contig11399.1193.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=126bp
VLYSLFLWQIKPLFSHLMEAGSSAPAPASEAAAAADGGSLDDGDAKEPTP
AKGKKRGRGKGKKTREDEEDTLGDRTLEVEEITEEKVQEVVRYRDDLVEV
LRAMLAMHLYPRRDDDEEEDEGQDQG
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mRNA from alignment at Ecto-sp9_F_contig11399:1265..3053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11399.1193.1 ID=mRNA_Ecto-sp9_F_contig11399.1193.1|Name=mRNA_Ecto-sp9_F_contig11399.1193.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1789bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11399:1265..3053- (Ectocarpus species9 EcSCA_722f female)
GTCCTGTACTCGCTCTTCTTGTGGCAGATCAAGCCTCTCTTCTCGCACCT
CATGGAGGCTGGCTCTTCAGCCCCTGCTCCAGCTTCGGAAGGTTTGTACA
CAGTAGAGCACGCTGAGGATGTTTTTGTTGTTGTTGTTGTTGTTGTTGTG
GTCTTGACGCATTAAAATCGTGCCGGTCTCTGGTCATTGCCTTCGGTGGG
TGTTGTTTTCTTCGCAAGGTTTGGTTCGACTCGATCGGTGTGTGGTGTTG
CTGAGATGGCAGTTGTTGTTGTTGTTGCTGCTGCTGCTTGTATCATTGTA
TCATTGATCTGTGCTTGGGGTCATGGAGAGAGAAAGATAACCCCTCTGGG
CTTTTCCTGGGGAAGCAGACTTGTTCAATTGCCCCCTTTTCTTCCAAGCC
TCGAACCGAAAAGAAAACGACAGCCTCCGCTTTCCATGCTTGCAAACCAT
GTTCCTCGCTTGGTTTCGAAACAAACATTTGACAATGCTCATTTTGCTCG
TGTGTTTTTGTGGGCGGATTATGACACACGTACATGATTGGTACCGCAGC
AGCTGCGGCTGCTGCCGACGGAGGCAGTTTGGACGACGGGGATGCCAAGG
AACCGACCCCTGCCAAGGGGAAGAAGAGAGGCAGGGGAAAGGGGAAGAAG
ACCCGGGAGGACGAGGAGGATACCCTTGGTGGGTATTGGTGTTGCTGTTG
TTCATTGTGACTGTTGTTGTTTGTTGTTGCTGTTGTTCATTGTGACTGCT
GCTGCTGTTGTTGTTGTTGCTGTTGTTCATTGTGACTGTTGTTGTTGTTG
TTGTGACTTCCAGTGTTGGTTTAAGATAGGACAACAGCTTCTAGCCTACT
CTAGCAAGGCGATGTCCACAACGTGGTGCTCAGCCCGGCGACATCATATC
TACCCACCTAATTTTTTTTCGTCTTGATAATTTTCTGGCGTTTTGGCCTG
CGTTTCACGCGTCCTTGCTTCCCGCAATACAACCTTTTCGTTGTTAGGTG
TTTTTTTTTTTCAATGTCTTTCTCAAAACCAAGAGTCATTAAATACAAGG
AAATTTTATTAAGAAGCACGCACTTATGTTCCTGTGGGAGCATTAATTTT
TTGCGGTCTTTTTGGCCGCTCCTTGTTGTGTCTGTCATTTTTTTTTCGCA
GGTGACCGGACTTTGGAGGTGGAGGAGATCACGGAGGAAAAAGTCCAAGA
GGTCGTCAGATACCGGTAAGAAAATGTTGTTCTCGAGGTTTTTGTTTTCG
CCGAAAGTTTCTGGGTGGACTTTATGATCGCCCAGACGACTTCTCTCCAG
CATCAACAATTTGATCAGGTCTAGTAGGGTGGTGGCATGAGAGGTCACCT
TTCACGCTTGCACTGTGTGCATCACGGAAGGTGAAGGTGTTCGACTCTTT
TAATCCCTATCGGCGACACCATGTATTCAAGCCAGGTTCTCTGGGAACCT
GCTTGTAGCTCGCGGCGTACAAAGCCGACCACAAAACAATCGTTTCTTCC
GAGCGAAGGGCCTGTTTTTGAAAATGCGGTTCAAGAACACTGCCCCTCTT
GTAGTAGAGATTGTGTTTGAAGACTATGTCGTATCAACTTTGGATGTGTT
TCTCCTCTACTATTGGAGAGCCCTTCGTACATTTTCGTTCACCTTTATTC
AAGTCTCCTTGCACTACAATGCTTTCCCTTTTTTTTCTCAGGGACGATCT
TGTGGAAGTCCTGCGGGCCATGCTCGCGATGCACCTGTACCCCAGGAGGG
ACGACGACGAAGAGGAGGACGAAGGCCAAGACCAGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11399:1265..3053-

>mRNA_Ecto-sp9_F_contig11399.1193.1 ID=mRNA_Ecto-sp9_F_contig11399.1193.1|Name=mRNA_Ecto-sp9_F_contig11399.1193.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11399:1265..3053- (Ectocarpus species9 EcSCA_722f female)
GTCCTGTACTCGCTCTTCTTGTGGCAGATCAAGCCTCTCTTCTCGCACCT
CATGGAGGCTGGCTCTTCAGCCCCTGCTCCAGCTTCGGAAGGTCCTGTAC
TCGCTCTTCTTGTGGCAGATCAAGCCTCTCTTCTCGCACCTCATGGAGGC
TGGCTCTTCAGCCCCTGCTCCAGCTTCGGAAGCTGCGGCTGCTGCCGACG
GAGGCAGTTTGGACGACGGGGATGCCAAGGAACCGACCCCTGCCAAGGGG
AAGAAGAGAGGCAGGGGAAAGGGGAAGAAGACCCGGGAGGACGAGGAGGA
TACCCTTGCTGCGGCTGCTGCCGACGGAGGCAGTTTGGACGACGGGGATG
CCAAGGAACCGACCCCTGCCAAGGGGAAGAAGAGAGGCAGGGGAAAGGGG
AAGAAGACCCGGGAGGACGAGGAGGATACCCTTGGTGACCGGACTTTGGA
GGTGGAGGAGATCACGGAGGAAAAAGTCCAAGAGGTCGTCAGATACCGGT
GACCGGACTTTGGAGGTGGAGGAGATCACGGAGGAAAAAGTCCAAGAGGT
CGTCAGATACCGGGACGATCTTGTGGAAGTCCTGCGGGCCATGCTCGCGA
TGCACCTGTACCCCAGGAGGGACGACGACGAAGAGGAGGACGAAGGCCAA
GACCAGGGAGGACGATCTTGTGGAAGTCCTGCGGGCCATGCTCGCGATGC
ACCTGTACCCCAGGAGGGACGACGACGAAGAGGAGGACGAAGGCCAAGAC
CAGGGA
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