mRNA_Ecto-sp9_F_contig11394.1190.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (family transporter: sugar n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X7_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.880e-74 Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 1
Query: 1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
MSTIAGTLPCVMMIRYSGG+FGVYA+YAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSL VASRGREDAFTLAILGWLACGTMLLAM LTVHRDEQKV
Sbjct: 131 MSTIAGTLPCVMMIRYSGGVFGVYAVYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 248
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE) HSP 1 Score: 223 bits (569), Expect = 2.050e-68 Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1
Query: 13 AGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
AGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSV+MNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSL VASRGREDAFTLAILGWLACGTMLLAM LTVHRDEQKV
Sbjct: 345 AGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVMMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 458
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ4_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.700e-25 Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 4 STIAGTLPCVMMIRY--SGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVAS-RGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
+ IAG P ++ S FGV A A+A G LAA TGP +++ L NVTLP RG AF +FN+FDDLGKGLGP +VSL + GR AF +LGW+ CG LAM TV RDE+ V
Sbjct: 413 TAIAGCFPLWYLLNGVDSSTPFGVAATTALAAGLLAAPTGPIVKATLTNVTLPRARGQAFALFNLFDDLGKGLGPYLVSLLIVGCGGRRAAFNTGVLGWVLCGVANLAMFFTVARDERAV 532
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=2 Tax=Spirochaetia TaxID=203692 RepID=A0A2E8PQ53_9SPIO) HSP 1 Score: 104 bits (260), Expect = 6.620e-24 Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
++ + G +P + MI Y G + A+ GG + MTG N+R++L+N LP RG AFGVFN+FDDLGKGLGP +V L + + A+ +AI W+ CG + + + T++ DE +V
Sbjct: 381 ITVMVGAVPVLFMINYEGATLMPAFIAALIGGLIVPMTGANVRAILINTNLPENRGAAFGVFNLFDDLGKGLGPFIVGLFILAMPAIIAYNVAISMWIVCGLVWVGIVFTMNADEDRV 498
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Leptospiraceae bacterium TaxID=2026757 RepID=A0A2E5S777_9LEPT) HSP 1 Score: 104 bits (259), Expect = 8.830e-24 Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
++ + G +P + MI Y G + A+ GG + MTG N+R++L+N LP RG AFGVFN+FDDLGKGLGP +V L + + A+ +AI W+ CG + + + T++ DE +V
Sbjct: 374 ITVMVGAIPVLFMINYDGPTLMPAFIAALVGGLIVPMTGANVRAILINTNLPENRGAAFGVFNLFDDLGKGLGPFIVGLFILAMPALIAYNVAISMWIVCGLVWVGIIFTMNADEDRV 491
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R0Z2_DUNTE) HSP 1 Score: 97.4 bits (241), Expect = 7.080e-23 Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 76 LYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDE 345
L A+ GG L+ + GPN+R+ LMNV P RG AF + V DDLGKGLGPA+V++ + GR AF +A LGW+ CG +LL++ T+ +DE
Sbjct: 51 LLAVWGGVLSGVPGPNLRAALMNVNEPEVRGVAFALQTVTDDLGKGLGPAVVAVVINLVGRRSAFNIATLGWIPCGLLLLSLAFTMRKDE 140
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A2E9QGK5_9SPIO) HSP 1 Score: 101 bits (252), Expect = 8.410e-23 Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
++ + G +P + MI Y G G + A+ GG + MTG N+R++L+N LP RG AFG+FN+FDDLGK GP +V L + A+ +AI W+ CG + + + T++ DE +V
Sbjct: 379 ITVMVGAIPVLFMINYDGPDLGPAFIAALVGGLIVPMTGANVRAILINTNLPENRGAAFGIFNLFDDLGKAFGPFIVGLFILVMPALIAYNVAISMWIVCGLVWVGIIFTMNADEDRV 496
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: NepI (protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XR16_SYMPI) HSP 1 Score: 95.9 bits (237), Expect = 1.520e-21 Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 16 GTLPCVMMIRYSGGIFG---VYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDE 345
G LP + + S G +G ++ + A+ GG LA + G N ++VL+N +RGT FGV+N+ DDLGKGLGPA+VS V GR D+F L I WL CG + MT T+ D+
Sbjct: 106 GMLPFLFLFS-SAGTWGHPVLFYILALTGGILAPIAGSNAKAVLLNAVATRSRGTVFGVYNIMDDLGKGLGPALVSSWVRRLGRRDSFMLGIAFWLPCGLFCVLMTKTIPGDD 217
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSC7_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.890e-21 Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 76 LYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVS-LAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
+ A G+ +TGP +++ + NV LP RG AF +FN+FDDLGKGLGP V+ L V GR AF + +LGW CG L ++ TV DEQKV
Sbjct: 33 IVAFMSGYFCTITGPIVKATVQNVCLPQHRGQAFALFNLFDDLGKGLGPVFVAFLIVQLGGRLPAFNVTVLGWAVCGIFNLGISFTVSADEQKV 126
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1H4_9CRYP) HSP 1 Score: 97.4 bits (241), Expect = 2.770e-21 Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 67 VYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVA-SRGREDAFTLAIL-GWLACGTMLLAMTLTVHRDEQKV 354
V L A GG +A +TG NIR+VL+NV P TRG+AF V+ + DDLGKG GPA +S+ +A + GR+ AF A+L GW +C +LL + LT+ +DEQ++
Sbjct: 394 VLCLIAFGGGVVACVTGANIRAVLLNVNAPETRGSAFAVYTLMDDLGKGFGPAAISVLIAVNGGRKAAFNGAVLVGWSSCAFLLLCICLTLRKDEQRL 491 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11394.1190.1 >prot_Ecto-sp9_F_contig11394.1190.1 ID=prot_Ecto-sp9_F_contig11394.1190.1|Name=mRNA_Ecto-sp9_F_contig11394.1190.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTback to top mRNA from alignment at Ecto-sp9_F_contig11394:11..920+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11394.1190.1 ID=mRNA_Ecto-sp9_F_contig11394.1190.1|Name=mRNA_Ecto-sp9_F_contig11394.1190.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=910bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11394:11..920+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11394:11..920+ >mRNA_Ecto-sp9_F_contig11394.1190.1 ID=mRNA_Ecto-sp9_F_contig11394.1190.1|Name=mRNA_Ecto-sp9_F_contig11394.1190.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11394:11..920+ (Ectocarpus species9 EcSCA_722f female)back to top |