mRNA_Ecto-sp9_F_contig11394.1190.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11394.1190.1
Unique NamemRNA_Ecto-sp9_F_contig11394.1190.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (family transporter: sugar n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X7_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 2.880e-74
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 1
Query:    1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            MSTIAGTLPCVMMIRYSGG+FGVYA+YAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSL VASRGREDAFTLAILGWLACGTMLLAM LTVHRDEQKV
Sbjct:  131 MSTIAGTLPCVMMIRYSGGVFGVYAVYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 248          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 2.050e-68
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1
Query:   13 AGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            AGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSV+MNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSL VASRGREDAFTLAILGWLACGTMLLAM LTVHRDEQKV
Sbjct:  345 AGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVMMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 458          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.700e-25
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    4 STIAGTLPCVMMIRY--SGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVAS-RGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            + IAG  P   ++    S   FGV A  A+A G LAA TGP +++ L NVTLP  RG AF +FN+FDDLGKGLGP +VSL +    GR  AF   +LGW+ CG   LAM  TV RDE+ V
Sbjct:  413 TAIAGCFPLWYLLNGVDSSTPFGVAATTALAAGLLAAPTGPIVKATLTNVTLPRARGQAFALFNLFDDLGKGLGPYLVSLLIVGCGGRRAAFNTGVLGWVLCGVANLAMFFTVARDERAV 532          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=2 Tax=Spirochaetia TaxID=203692 RepID=A0A2E8PQ53_9SPIO)

HSP 1 Score: 104 bits (260), Expect = 6.620e-24
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            ++ + G +P + MI Y G       + A+ GG +  MTG N+R++L+N  LP  RG AFGVFN+FDDLGKGLGP +V L + +     A+ +AI  W+ CG + + +  T++ DE +V
Sbjct:  381 ITVMVGAVPVLFMINYEGATLMPAFIAALIGGLIVPMTGANVRAILINTNLPENRGAAFGVFNLFDDLGKGLGPFIVGLFILAMPAIIAYNVAISMWIVCGLVWVGIVFTMNADEDRV 498          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Leptospiraceae bacterium TaxID=2026757 RepID=A0A2E5S777_9LEPT)

HSP 1 Score: 104 bits (259), Expect = 8.830e-24
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            ++ + G +P + MI Y G       + A+ GG +  MTG N+R++L+N  LP  RG AFGVFN+FDDLGKGLGP +V L + +     A+ +AI  W+ CG + + +  T++ DE +V
Sbjct:  374 ITVMVGAIPVLFMINYDGPTLMPAFIAALVGGLIVPMTGANVRAILINTNLPENRGAAFGVFNLFDDLGKGLGPFIVGLFILAMPALIAYNVAISMWIVCGLVWVGIIFTMNADEDRV 491          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R0Z2_DUNTE)

HSP 1 Score: 97.4 bits (241), Expect = 7.080e-23
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   76 LYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDE 345
            L A+ GG L+ + GPN+R+ LMNV  P  RG AF +  V DDLGKGLGPA+V++ +   GR  AF +A LGW+ CG +LL++  T+ +DE
Sbjct:   51 LLAVWGGVLSGVPGPNLRAALMNVNEPEVRGVAFALQTVTDDLGKGLGPAVVAVVINLVGRRSAFNIATLGWIPCGLLLLSLAFTMRKDE 140          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A2E9QGK5_9SPIO)

HSP 1 Score: 101 bits (252), Expect = 8.410e-23
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            ++ + G +P + MI Y G   G   + A+ GG +  MTG N+R++L+N  LP  RG AFG+FN+FDDLGK  GP +V L +       A+ +AI  W+ CG + + +  T++ DE +V
Sbjct:  379 ITVMVGAIPVLFMINYDGPDLGPAFIAALVGGLIVPMTGANVRAILINTNLPENRGAAFGIFNLFDDLGKAFGPFIVGLFILVMPALIAYNVAISMWIVCGLVWVGIIFTMNADEDRV 496          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: NepI (protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XR16_SYMPI)

HSP 1 Score: 95.9 bits (237), Expect = 1.520e-21
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   16 GTLPCVMMIRYSGGIFG---VYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDE 345
            G LP + +   S G +G   ++ + A+ GG LA + G N ++VL+N     +RGT FGV+N+ DDLGKGLGPA+VS  V   GR D+F L I  WL CG   + MT T+  D+
Sbjct:  106 GMLPFLFLFS-SAGTWGHPVLFYILALTGGILAPIAGSNAKAVLLNAVATRSRGTVFGVYNIMDDLGKGLGPALVSSWVRRLGRRDSFMLGIAFWLPCGLFCVLMTKTIPGDD 217          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSC7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.890e-21
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   76 LYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVS-LAVASRGREDAFTLAILGWLACGTMLLAMTLTVHRDEQKV 354
            + A   G+   +TGP +++ + NV LP  RG AF +FN+FDDLGKGLGP  V+ L V   GR  AF + +LGW  CG   L ++ TV  DEQKV
Sbjct:   33 IVAFMSGYFCTITGPIVKATVQNVCLPQHRGQAFALFNLFDDLGKGLGPVFVAFLIVQLGGRLPAFNVTVLGWAVCGIFNLGISFTVSADEQKV 126          
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1H4_9CRYP)

HSP 1 Score: 97.4 bits (241), Expect = 2.770e-21
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   67 VYALYAMAGGFLAAMTGPNIRSVLMNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVA-SRGREDAFTLAIL-GWLACGTMLLAMTLTVHRDEQKV 354
            V  L A  GG +A +TG NIR+VL+NV  P TRG+AF V+ + DDLGKG GPA +S+ +A + GR+ AF  A+L GW +C  +LL + LT+ +DEQ++
Sbjct:  394 VLCLIAFGGGVVACVTGANIRAVLLNVNAPETRGSAFAVYTLMDDLGKGFGPAAISVLIAVNGGRKAAFNGAVLVGWSSCAFLLLCICLTLRKDEQRL 491          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11394.1190.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MFS2.880e-7496.61family transporter: sugar n=1 Tax=Ectocarpus silic... [more]
MFS2.050e-6897.37domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
MFS1.700e-2550.83domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]
MFS6.620e-2440.68domain-containing protein n=2 Tax=Spirochaetia Tax... [more]
MFS8.830e-2440.68domain-containing protein n=1 Tax=Leptospiraceae b... [more]
Hypothetical7.080e-2350.00protein (Fragment) n=1 Tax=Dunaliella tertiolecta ... [more]
MFS8.410e-2338.98domain-containing protein n=1 Tax=Spirochaetaceae ... [more]
NepI1.520e-2144.25protein (Fragment) n=1 Tax=Symbiodinium pilosum Ta... [more]
Hypothetical1.890e-2147.87protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Hypothetical2.770e-2150.00protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11394contigEcto-sp9_F_contig11394:11..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue2.7e-58
Seed eggNOG ortholog2880.D7G3X7
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs2QTPT@2759,COG0477@1
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928386.973552-CDS-Ecto-sp9_F_contig11394:10..1501622928386.973552-CDS-Ecto-sp9_F_contig11394:10..150Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11394 11..150 +
1692277854.4320707-CDS-Ecto-sp9_F_contig11394:10..1501692277854.4320707-CDS-Ecto-sp9_F_contig11394:10..150Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11394 11..150 +
1622928386.9887044-CDS-Ecto-sp9_F_contig11394:706..9201622928386.9887044-CDS-Ecto-sp9_F_contig11394:706..920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11394 707..920 +
1692277854.4576023-CDS-Ecto-sp9_F_contig11394:706..9201692277854.4576023-CDS-Ecto-sp9_F_contig11394:706..920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11394 707..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11394.1190.1prot_Ecto-sp9_F_contig11394.1190.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11394 11..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11394.1190.1

>prot_Ecto-sp9_F_contig11394.1190.1 ID=prot_Ecto-sp9_F_contig11394.1190.1|Name=mRNA_Ecto-sp9_F_contig11394.1190.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
MSTIAGTLPCVMMIRYSGGIFGVYALYAMAGGFLAAMTGPNIRSVLMNVT
LPSTRGTAFGVFNVFDDLGKGLGPAMVSLAVASRGREDAFTLAILGWLAC
GTMLLAMTLTVHRDEQKV
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mRNA from alignment at Ecto-sp9_F_contig11394:11..920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11394.1190.1 ID=mRNA_Ecto-sp9_F_contig11394.1190.1|Name=mRNA_Ecto-sp9_F_contig11394.1190.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=910bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11394:11..920+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGACCATCGCGGGGACCCTGCCTTGCGTCATGATGATCCGGTACTC TGGAGGCATCTTCGGCGTCTACGCGCTGTACGCCATGGCGGGGGGGTTCC TGGCCGCCATGACGGGGCCGAACATCAGATCGGTGTTGATGTGAGTGCTC GAGATAGACGCTGCTGCGCTCTTTTTCTGCCGGTTGGCGTTTTTGGATTC TGTTCGGGGGGATCTCGTGCGGTGCTCTTTCGGGTTTAGCGTTTTGGTTT TGTGGGGGGGAATCTCCTGCTGCGCTCTTTTTCTACCGGGTTGGCGTTTT TGGTTTCTGTGCGGCGGGATCCCCTTCCTCCACCGGCGCGTTCCTGCTTG GGGTACCTACCCGGCACCTCCCTCCTGATCTATGTAGGGGGGGTGGTACG TACGATTGACGCCCCCCCCGACAGAGCACTGCGTTCTCTCTACTCTAAAT TTATTTCCACATGCTACTACCATTTCTATATATAAGGTAGAGTCAACCTT CTTGTCTGCGCCTTTGCCAAACAAGGGGGTGTCCGCCTGCGAACTTGATC GAAGCACCGCTATTTGTACCAGTACAACATGAGGATTAGGTAACCTTGTT AACACGAGGACATGTCACCATACCCTACACCAAATGTGGGTGAAATCGTG CGGCACCCCCCCCCCCTCCCCTTTTTTGTATTTTTTCGACGTTAAGGAAC GTCACCCTTCCCTCCACGCGAGGGACAGCTTTCGGAGTCTTCAATGTCTT CGACGACCTGGGCAAGGGCCTCGGCCCGGCAATGGTGAGCCTTGCCGTGG CGAGCAGGGGGAGGGAGGATGCCTTCACGCTGGCCATCCTGGGGTGGCTC GCCTGCGGGACGATGCTCCTGGCCATGACTCTCACGGTTCATCGCGACGA GCAAAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11394:11..920+

>mRNA_Ecto-sp9_F_contig11394.1190.1 ID=mRNA_Ecto-sp9_F_contig11394.1190.1|Name=mRNA_Ecto-sp9_F_contig11394.1190.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11394:11..920+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGACCATCGCGGGGACCCTGCCTTGCGTCATGATGATCCGGTACTC
TGGAGGCATCTTCGGCGTCTACGCGCTGTACGCCATGGCGGGGGGGTTCC
TGGCCGCCATGACGGGGCCGAACATCAGATCGGTGTTGATATGTCGACCA
TCGCGGGGACCCTGCCTTGCGTCATGATGATCCGGTACTCTGGAGGCATC
TTCGGCGTCTACGCGCTGTACGCCATGGCGGGGGGGTTCCTGGCCGCCAT
GACGGGGCCGAACATCAGATCGGTGTTGATGAACGTCACCCTTCCCTCCA
CGCGAGGGACAGCTTTCGGAGTCTTCAATGTCTTCGACGACCTGGGCAAG
GGCCTCGGCCCGGCAATGGTGAGCCTTGCCGTGGCGAGCAGGGGGAGGGA
GGATGCCTTCACGCTGGCCATCCTGGGGTGGCTCGCCTGCGGGACGATGC
TCCTGGCCATGACTCTCACGGTTCATCGCGACGAGCAAAAGGTGGAACGT
CACCCTTCCCTCCACGCGAGGGACAGCTTTCGGAGTCTTCAATGTCTTCG
ACGACCTGGGCAAGGGCCTCGGCCCGGCAATGGTGAGCCTTGCCGTGGCG
AGCAGGGGGAGGGAGGATGCCTTCACGCTGGCCATCCTGGGGTGGCTCGC
CTGCGGGACGATGCTCCTGGCCATGACTCTCACGGTTCATCGCGACGAGC
AAAAGGTG
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