mRNA_Ecto-sp9_F_contig1139.1188.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1139.1188.1
Unique NamemRNA_Ecto-sp9_F_contig1139.1188.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.560e-46
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MFCHRNIKQVKIALPDGAKRAVDIRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTDYVSIAGVFTSSGQSISISEVEFVEEIQD 267
            MFCHRNIKQVKIALPDGA+RAVD+RIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFT+YVSIAGVFTSSGQSISISEVEFVEEIQD
Sbjct:  396 MFCHRNIKQVKIALPDGAERAVDMRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTNYVSIAGVFTSSGQSISISEVEFVEEIQD 484
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BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.590e-36
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 MFCHRNIKQVKIALPDGAKRAVDIRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTDYVSIAGVFTSSGQSISISEVEFVEEIQD 267
            MF HR+IKQVKIALPDGA+RAVD+RIAAPY    ASF E+FVTSSGTTDGFET++FD+FTD VSIAGVFTS GQSISISEVEFVEEIQD
Sbjct:  583 MFSHRHIKQVKIALPDGAERAVDMRIAAPYD---ASFGEVFVTSSGTTDGFETFEFDYFTDVVSIAGVFTSGGQSISISEVEFVEEIQD 668
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BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Match: F5/8 (type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.130e-26
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 MFCHRNIKQVKIALPDGAKRAVDIRIAAPYSSN-SASFEEIFVTSSGTTDGFETYDFDHFTDYVSIAGVFTSSGQSISISEVEFVEEIQ 264
            +F  R+IKQVKIALPDGA+RAVD+RIA  Y    +A+F E +VTSSGTTD FETYDFD FT+ + I+GVFTS+ Q+ISISEVEF+EE+Q
Sbjct:  585 LFSWRHIKQVKIALPDGAERAVDMRIAGRYDDELAAAFAEAYVTSSGTTDEFETYDFDVFTNEILISGVFTSASQTISISEVEFMEELQ 673
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BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Match: F5/8 (type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.250e-22
Identity = 52/84 (61.90%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   10 HRNIKQVKIALPDGAKRAVDIRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTDYVSIAGVFTSSGQSISISEVEFVEEI 261
            +R++KQVK+AL DGA+R+VD+R+A  +SS+ A   E FVTSSGTT+GFETYDFD+   Y+ IA VF+S G+SISISEVE +EE+
Sbjct:  601 YRHVKQVKVALADGAERSVDMRLAGRFSSSIA---EEFVTSSGTTNGFETYDFDYKASYIRIAAVFSSPGESISISEVEIMEEV 681
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BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.750e-20
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   13 RNIKQVKIALPDGAKRAVDIRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTDYVSIAGVFTSSGQSISISEVEFVEEIQD 267
            R+IKQVKIAL DGA+RAVD+ I+  Y +      E  VTSSGTTDG ETYD D+ T  V I+G F+S GQSISISEVEFVEE+ D
Sbjct:  482 RHIKQVKIALADGAERAVDMSISRGYGTT----PEELVTSSGTTDGLETYDVDYRTSSVRISGDFSSPGQSISISEVEFVEEVVD 562
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BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-6
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  115 EIFVTSSGTTDGFETYDFDHFTDYVSIAGVFTSSGQSISISE 240
            E FV SSGTTDGFETYDFD+    V IA VF+S G+ ISISE
Sbjct:   13 EEFVMSSGTTDGFETYDFDYKASSVRIAAVFSSPGEFISISE 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1139.1188.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized1.560e-4696.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.590e-3683.15protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1... [more]
F5/81.130e-2667.42type C domain-containing protein n=3 Tax=Ectocarpu... [more]
F5/83.250e-2261.90type C domain-containing protein n=2 Tax=Ectocarpu... [more]
Uncharacterized8.750e-2063.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.910e-669.05protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1139contigEcto-sp9_F_contig1139:9703..11382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_003880.3
Exons4
Model size267
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1139.1188.1prot_Ecto-sp9_F_contig1139.1188.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1139 9703..11382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928386.7022665-CDS-Ecto-sp9_F_contig1139:9702..97391622928386.7022665-CDS-Ecto-sp9_F_contig1139:9702..9739Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 9703..9739 +
1692277854.3587027-CDS-Ecto-sp9_F_contig1139:9702..97391692277854.3587027-CDS-Ecto-sp9_F_contig1139:9702..9739Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 9703..9739 +
1622928386.7169454-CDS-Ecto-sp9_F_contig1139:10068..101391622928386.7169454-CDS-Ecto-sp9_F_contig1139:10068..10139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 10069..10139 +
1692277854.3681962-CDS-Ecto-sp9_F_contig1139:10068..101391692277854.3681962-CDS-Ecto-sp9_F_contig1139:10068..10139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 10069..10139 +
1622928386.8236682-CDS-Ecto-sp9_F_contig1139:10762..108941622928386.8236682-CDS-Ecto-sp9_F_contig1139:10762..10894Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 10763..10894 +
1692277854.3782244-CDS-Ecto-sp9_F_contig1139:10762..108941692277854.3782244-CDS-Ecto-sp9_F_contig1139:10762..10894Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 10763..10894 +
1622928386.8378634-CDS-Ecto-sp9_F_contig1139:11355..113821622928386.8378634-CDS-Ecto-sp9_F_contig1139:11355..11382Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 11356..11382 +
1692277854.3880587-CDS-Ecto-sp9_F_contig1139:11355..113821692277854.3880587-CDS-Ecto-sp9_F_contig1139:11355..11382Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 11356..11382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1139.1188.1

>prot_Ecto-sp9_F_contig1139.1188.1 ID=prot_Ecto-sp9_F_contig1139.1188.1|Name=mRNA_Ecto-sp9_F_contig1139.1188.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=89bp
MFCHRNIKQVKIALPDGAKRAVDIRIAAPYSSNSASFEEIFVTSSGTTDG
FETYDFDHFTDYVSIAGVFTSSGQSISISEVEFVEEIQD
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mRNA from alignment at Ecto-sp9_F_contig1139:9703..11382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1139.1188.1 ID=mRNA_Ecto-sp9_F_contig1139.1188.1|Name=mRNA_Ecto-sp9_F_contig1139.1188.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1680bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1139:9703..11382+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCTGCCACCGAAACATCAAGCAGGTCAAAATCGGTGAGCCGGGTCG
GGTCGCCGCGATCTCGACTGTGGAATATTTCACAGACCTACCAGAGTGTC
ACGGAATTTTCCGTTTATGGACGGTGTTGATTGGTTATTCGTAAACGCCT
TTCTTCGTGCCCTTCTCCGATTTACTGATTTATTACACCCAACGCAACGT
TTACTGTCGAGCAGATCATCTACGAACGAACGACCGCCAGACAGAGTAGC
CCAGCAGGATTCGTGTATGGACGATGTTGAGTGATTATTCCTTCCCTTTG
AGTACTAACGCTTCCCATGCCCTACTCCGATCCACCGCTTTTTCGGATTC
CCTCTTTGTTGCGAAGCTCTGCCCGATGGTGCCAAACGTGCGGTGGACAT
AAGGATTGCCGCCCCGTATAGCTCGAATAGCGCCAGCGTGAGTCTCTGGA
GATTCGCAGTGTGTAACCTCGAACCCTTCTTGCTCCGACCCTGTCGCCGG
AGTTGTTATTCATGAGTGAAAATGCTGGCAATTCTCATGTATCCGTACCG
TCGTGTTTCGCACAAGACAACACCGCCGATGACGACAGCGTTTCTGGCGT
GAGCACAAAAGTTCTCAGCTGGGGCGCTTTCCCGTGGAGGGTTGGCAAGT
TGGGCACATTCATGGGGCGGCTATCTTGTGAGGAATTACGGTACTCCTGA
GCGTTGTCGGAAAGGTCACACCAAGCAGCAAATCATGTTGCGTTCTCGAG
TACTATTGTAGGACGAGGCAGAGGCGTGGTGACATGTCTCACTCGCTTGC
GCGAAACACCGCGGGTTTGGCAACGCCCCTTGGGAACTCTGCACGTACTC
CTAACTAGGGGACGGTGCATCTCTGGAAAATAGCTGCGGGATGTGCGACT
TGTAGGGCTTGCAAAACCTCGAGCTCACCTGAAGCCACGTCCACGCGATA
CATTCGTGGTCGTTTGTTGGACTCCTGCAAGTGGCATTCTATTTATCCCC
CCATGGCATTTTGCTTTGTATCGCGAATTAAAATTACTATTTTTCTCGTG
TTCTTCGCAGTTTGAGGAAATTTTCGTTACGAGTTCGGGGACCACGGACG
GCTTCGAAACGTACGACTTTGACCACTTTACGGACTATGTGTCCATCGCC
GGAGTGTTCACAAGCAGCGGCCAGTCTATCAGCATCTCGGAGGTCAGTGC
TATCGAAGGATGCCGCTCACATGGAGTAGTTGCTTCGATACCATTCAAGA
TCAGATATCGTTGCACCCACGTGTACACTGCACCTTCTTTGTTGGAATGT
TCGGTAGCCGGCGTTTGGTGCCCAGCAACAGCGGGTCCCAGGACGGCTCT
GTCTTGTCCGTCCGTAGGAGCAATACTAATGGGATCACTTAGAGCAGAGT
GGGTGGTTTAGATCCTCTTGTTGCTTGCTGAGCAGCGACAGTGTTCCCTG
ATGGCGCCAGAGTTACATGTGTCCACTGGGGTTATCGTCCCTAGTGATTG
TTCTGGGTGAGATCGTCGTGCACAAGACAGACCGGAGGTACAAAGAGTTA
TAGCAGTGGGCATTCCGTGTACAAAAGTGTTCATGCGCTTGAGTACGAGC
AGGTGGTCTGCGGTTTACCTCACATAACGACTACTTTGCATGACCGTCTG
CAGGTGGAGTTTGTCGAAGAGATCCAGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1139:9703..11382+

>mRNA_Ecto-sp9_F_contig1139.1188.1 ID=mRNA_Ecto-sp9_F_contig1139.1188.1|Name=mRNA_Ecto-sp9_F_contig1139.1188.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1139:9703..11382+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCTGCCACCGAAACATCAAGCAGGTCAAAATCGATGTTCTGCCACC
GAAACATCAAGCAGGTCAAAATCGCTCTGCCCGATGGTGCCAAACGTGCG
GTGGACATAAGGATTGCCGCCCCGTATAGCTCGAATAGCGCCAGCCTCTG
CCCGATGGTGCCAAACGTGCGGTGGACATAAGGATTGCCGCCCCGTATAG
CTCGAATAGCGCCAGCTTTGAGGAAATTTTCGTTACGAGTTCGGGGACCA
CGGACGGCTTCGAAACGTACGACTTTGACCACTTTACGGACTATGTGTCC
ATCGCCGGAGTGTTCACAAGCAGCGGCCAGTCTATCAGCATCTCGGAGTT
TGAGGAAATTTTCGTTACGAGTTCGGGGACCACGGACGGCTTCGAAACGT
ACGACTTTGACCACTTTACGGACTATGTGTCCATCGCCGGAGTGTTCACA
AGCAGCGGCCAGTCTATCAGCATCTCGGAGGTGGAGTTTGTCGAAGAGAT
CCAGGACGTGGAGTTTGTCGAAGAGATCCAGGAC
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