mRNA_Ecto-sp9_F_contig11387.1185.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11387.1185.1
Unique NamemRNA_Ecto-sp9_F_contig11387.1185.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11387.1185.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM09_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.460e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 NRRQQRVRADLMLCVLYDMLGRYDKSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWCGSPGAG 201
            NRRQQRVRADLMLCVLYDMLGRYD SDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWCGSPGAG
Sbjct:  704 NRRQQRVRADLMLCVLYDMLGRYDMSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWCGSPGAG 770
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BLAST of mRNA_Ecto-sp9_F_contig11387.1185.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV62_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.590e-36
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 NRRQQRVRADLMLCVLYDMLGRYDKSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWCGSPGAG 201
            NRRQQRVRADLMLCVLYDMLGRYDKSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDW GSPGAG
Sbjct:  754 NRRQQRVRADLMLCVLYDMLGRYDKSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWRGSPGAG 820
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11387.1185.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.460e-3798.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.590e-3698.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11387contigEcto-sp9_F_contig11387:1950..2895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928386.0398266-CDS-Ecto-sp9_F_contig11387:1949..20451622928386.0398266-CDS-Ecto-sp9_F_contig11387:1949..2045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11387 1950..2045 -
1692277854.2727637-CDS-Ecto-sp9_F_contig11387:1949..20451692277854.2727637-CDS-Ecto-sp9_F_contig11387:1949..2045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11387 1950..2045 -
1622928386.0502467-CDS-Ecto-sp9_F_contig11387:2790..28951622928386.0502467-CDS-Ecto-sp9_F_contig11387:2790..2895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11387 2791..2895 -
1692277854.281277-CDS-Ecto-sp9_F_contig11387:2790..28951692277854.281277-CDS-Ecto-sp9_F_contig11387:2790..2895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11387 2791..2895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11387.1185.1prot_Ecto-sp9_F_contig11387.1185.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11387 1950..2895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11387.1185.1

>prot_Ecto-sp9_F_contig11387.1185.1 ID=prot_Ecto-sp9_F_contig11387.1185.1|Name=mRNA_Ecto-sp9_F_contig11387.1185.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
NRRQQRVRADLMLCVLYDMLGRYDKSDECLDAGFEGVAESSTHLHDVLDL
LLASKQERDWCGSPGAG
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mRNA from alignment at Ecto-sp9_F_contig11387:1950..2895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11387.1185.1 ID=mRNA_Ecto-sp9_F_contig11387.1185.1|Name=mRNA_Ecto-sp9_F_contig11387.1185.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=946bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11387:1950..2895- (Ectocarpus species9 EcSCA_722f female)
AACCGGAGGCAACAGCGCGTCAGGGCGGACCTGATGTTGTGCGTGCTGTA
CGACATGCTGGGCCGTTACGATAAGTCGGACGAGTGCCTGGACGCAGGCT
TTGAGGTAAGAAGGGTGGTATGGGAGGGTCGAGGGTGTAAGGCCAGCCTG
ATATAGGCAGTAGTCTACGCAGTTTTTTTTATGTAAGCAAACATACTGGG
TAAAGTATAGACGTTGGGGTTAGGGTTGGAGTCTGCGTGCCCGCTGCCTG
GTCTTTTTTCGCCATAATGGATGCGTTAGGGTCGAGGGAAGTGTACGGTC
GGCCTGATTCAGGCGATGCCGTTTGCAAATGGCGAGCGAGCGATATGCAA
TGGGAAATGTGGGGCAAGTCCAGTAACATTTGAGACGAAGATAAAACTAA
AATTTGGAAAATACTTGAGAATATGTTTGTCCCTGTGCGGACCTGTTTAG
CTCGCTCGTGCGTTCTCCCTGGTTCGTTTTGGCGTCGAATCGTTCGTTCC
CCAAGCCAAAGCCTGCGTAGTCGTACGTTGGTTTACCGAGCTTGGGTACT
GCTATGTTTCGGGCTCAATGAGCAAGGACGAGAGAGACAGCTTTTTGATG
CGCGACCCGGCTGTTTTGCACTCGTGATGAAGGATTCAGCATTCGGTGTT
CGGGTCTACCCCCCTCCCCATACCGTCGCGACCCCGCGCAGTCCATCCGC
ATCTTGTTGTTGTTTTTCTTTGGTCACCCCCTCTGCCGCTTTCGTCTGGG
AGTCTAAGACCGTAACCCTAACCCTCTCGACCCTGCGCACTCAATCCCCA
ATCTTCTTGTTGTTCTGGTTCTTCCGCCCCTGTCCTGCCACCGATGTCAG
GGAGTCGCGGAGTCATCGACGCACCTTCACGACGTACTGGACCTCCTCCT
CGCCTCCAAGCAAGAGAGAGACTGGTGCGGTTCCCCCGGCGCGGGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11387:1950..2895-

>mRNA_Ecto-sp9_F_contig11387.1185.1 ID=mRNA_Ecto-sp9_F_contig11387.1185.1|Name=mRNA_Ecto-sp9_F_contig11387.1185.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11387:1950..2895- (Ectocarpus species9 EcSCA_722f female)
AACCGGAGGCAACAGCGCGTCAGGGCGGACCTGATGTTGTGCGTGCTGTA
CGACATGCTGGGCCGTTACGATAAGTCGGACGAGTGCCTGGACGCAGGCT
TTGAGAACCGGAGGCAACAGCGCGTCAGGGCGGACCTGATGTTGTGCGTG
CTGTACGACATGCTGGGCCGTTACGATAAGTCGGACGAGTGCCTGGACGC
AGGCTTTGAGGGAGTCGCGGAGTCATCGACGCACCTTCACGACGTACTGG
ACCTCCTCCTCGCCTCCAAGCAAGAGAGAGACTGGTGCGGTTCCCCCGGC
GCGGGAGGAGTCGCGGAGTCATCGACGCACCTTCACGACGTACTGGACCT
CCTCCTCGCCTCCAAGCAAGAGAGAGACTGGTGCGGTTCCCCCGGCGCGG
GA
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