mRNA_Ecto-sp9_F_contig1137.1175.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: INCENP_ARK-bind (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI) HSP 1 Score: 563 bits (1450), Expect = 3.380e-185 Identity = 555/656 (84.60%), Postives = 558/656 (85.06%), Query Frame = 1
Query: 1 MASKASEQAVGGDAAAVPASPTGSAPVPTAKDSAAAAAAINAVTDGVAALSVGGSGXXXXXXXXXP-SEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRMGVKPPPSANSEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXXXQKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAAADEARRDAXXXXXLXXXXXXXXXXXEREAKARKLEEXXXXXXXXXXXXXXXXXXXXXXXRLAEKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPVKPPTPPRVAVKPPPTPPRPGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXXX--VKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 1959
MASKAS QA+GGDAAAVPASPTGSAPVPTAKDSAAAAAA+NAVTDGVAALSVGGSG XXXXX P SEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSR+GVKPPPSAN EVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXX QKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAA DEARRDA L XXXX EREAKARKLEE XXXXXXXXXXXXXXXXXXXXX RLAEKAA XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWT XXXX IRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXX VKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK
Sbjct: 1 MASKASGQAIGGDAAAVPASPTGSAPVPTAKDSAAAAAAVNAVTDGVAALSVGGSGVXXXXXATAPPSEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKPPPSANPEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXX---QKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAATDEARRDAQAKAELKAREAAXXXXAEREAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRKAEEKKRAERRAALXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------PGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWTPSKSSGSAAEVRQLALAKKKEEIXXXXEEIRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXVATPVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 630
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE) HSP 1 Score: 529 bits (1363), Expect = 6.400e-167 Identity = 565/670 (84.33%), Postives = 569/670 (84.93%), Query Frame = 1
Query: 1 MASKASEQAVGGDAAAVPASPTGSAPVPTAKDSAAAAAAINAVTDGVAALSVGGS-----------------GXXXXXXXXXPSEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRMGVKPPPSANSEVPSPTGSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXXXQKLDFSGSKASNNXXXXXXXXXXXXXKRGGDAAGSXXEGTPXXXXXXXXXXXXXXXXXXXAKARSLAEKAAADEARRDAXXXXXLXXXXXXXXXXXEREAKARKLEEXXXXXXXXXXXXXXXXXXXXXXXRLAEKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPVKPPTPPRVAVKPPPTPPRPGNKGQAQAPXXXXXXXXVAAAAPQVPSASSWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 1959
MASKAS+QAVGGDAAAVPASPTGSAPVP AKDSAA AAA+NAVTDGVAA SVGGS XXXXXXXXX TSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSR+GVK PPSANSE+PSPTGSTTQDAFAKFRAMDSNSKKASGSV SFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXX QKLDFSGSKASNN KRGGDA GSXX XXXXXXXXXXXXXXXXXXX KARSLAEK AADE XXXXX XXXXXXXXXXX AKARKLEE XXXXXXXXXXXXXXXXXXXXX RLAEKAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKPPTPPRVAVKP TPPRPGNKGQAQAPXXXXXXXX AAAAPQVPSASSWT IRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK
Sbjct: 380 MASKASDQAVGGDAAAVPASPTGSAPVPIAKDSAA-AAAVNAVTDGVAARSVGGSVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKQPPSANSEIPSPTGSTTQDAFAKFRAMDSNSKKASGSVHSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXP-QKLDFSGSKASNNINTPTSSSTSSL-KRGGDAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXKARSLAEKEAADEXXXXXXXXXXXXXXXXXXXXXXXXXAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-VKPPTPPRVAVKPXXTPPRPGNKGQAQAPXXXXXXXXXAAAAPQVPSASSWTPSKSSGSAAEVRQLALAKKKEEIAKRMEEIRNKKTKGTASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 1045
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: INCENP_ARK-bind (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R5_ECTSI) HSP 1 Score: 116 bits (290), Expect = 3.010e-26 Identity = 46/80 (57.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query: 1714 DKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 1953
+ + +P+WA + +A L++QYGG P+NP+KIF +F+TC+LE IF+T K+KWDR S+G+W +DRLTIAEKLAY RAMG+
Sbjct: 38 ESTFVPEWATNEGIAAALERQYGGDKPINPNKIFVDFYTCSLETIFDTNKKKWDRKSTGDWMSDRLTIAEKLAYDRAMGY 117
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 7.970e-18 Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 1717 KSAIPDWARGKALAKILDKQYG-GPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDR-SSSGNWHTDRLTIAEKLAYQRAMGFDK 1959
K +P+WA+ L + L++Q+ GPN L+PDKIF E TCNLE IF+ KK ++ R +SSGNW D +TIAEKL Y+R MG+ K
Sbjct: 227 KKKVPEWAQRHNLHRALERQFADGPNRLDPDKIFGEVLTCNLEEIFDKKKSRYQRRTSSGNWTKDHVTIAEKLTYKRTMGYQK 309
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 5.720e-17 Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 1726 IPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKW-DRSSSGNWHTDRLTIAEKLA 1932
IP WARGK L L++Q+GG P+NPD IF EFFTC+L+HIF+T+K+++ RSSSGNW D+LT+ E+LA
Sbjct: 460 IPAWARGKQLEAALERQFGGSAPINPDTIFAEFFTCDLQHIFDTRKKRYVTRSSSGNWLQDKLTLPERLA 529
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: INCENP_ARK-bind (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 7.660e-16 Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1717 KSAIPDWARGKALAKILDKQYGG---PNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRS--SSGNWHTDRLTIAEKLAYQRAMGF 1953
K IP WA L L+KQY G ++PD+IFPE +C+LE IF TKK K RS SSGNW D++T+AEKL Y+R MGF
Sbjct: 30 KKKIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEKLVYKREMGF 113
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9K2_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 9.190e-15 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1717 KSAIPDWARGKALAKILDKQY-GGPNPLNPDKIFPEFFTCNLEHIFNTKKQKW-DRSSSGNWHTDRLTIAEKLAYQRAMGFDK 1959
K +P+WA L K L++Q+ GP+ ++PD++FP+ TC+LE IF+ KK+++ R+SS NW D ++ AE L Y+R MGFDK
Sbjct: 166 KKKVPEWAMRSNLLKALERQFLDGPDRIDPDQLFPQVTTCDLEAIFDQKKKRYATRTSSANWAKDSVSAAETLVYKRTMGFDK 248
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBK4_THAOC) HSP 1 Score: 89.0 bits (219), Expect = 2.830e-14 Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1717 KSAIPDWARGKALAKILDKQYG-GPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDR-SSSGNWHTDRLTIAEKLAYQRAM 1947
K +P WA+ L + L+KQY GPN L+PDKIF E +CNL+ IF+ KK ++ R +SSGNW D +T EKLAY+RA+
Sbjct: 621 KKTVPQWAQKSNLMRALEKQYADGPNRLDPDKIFGEVLSCNLDEIFDKKKARYQRRTSSGNWSQDHVTAKEKLAYKRAV 699
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: INCENP_ARK-bind (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 3.720e-14 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 1726 IPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDR-SSSGNWHTDRLTIAEKLAYQRAMGFDK 1959
IP WA+G AL++ L +QY ++PDKIFPE FTC+LE IF K ++ R SS NW DR+T E L Y+R++G K
Sbjct: 195 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQEVLTYKRSVGIAK 273
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2K4_HETAK) HSP 1 Score: 80.5 bits (197), Expect = 4.770e-13 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1717 KSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNT----KKQKWD-RSSSGNWHTDRLTIAEKLAYQRAMGF 1953
K IP WARG L + L +Q+ + ++PD IFPE TC LE IF KK K+ R SSGNW D+LT+ EK+ YQRAMGF
Sbjct: 151 KKNIPSWARGAELKEQLCRQF--TDLVDPDSIFPEVSTCVLEDIFQEAAPKKKAKYKARKSSGNWQRDKLTLVEKMDYQRAMGF 232 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1137.1175.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1137.1175.1 >prot_Ecto-sp9_F_contig1137.1175.1 ID=prot_Ecto-sp9_F_contig1137.1175.1|Name=mRNA_Ecto-sp9_F_contig1137.1175.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=654bp MASKASEQAVGGDAAAVPASPTGSAPVPTAKDSAAAAAAINAVTDGVAALback to top mRNA from alignment at Ecto-sp9_F_contig1137:15103..21578+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1137.1175.1 ID=mRNA_Ecto-sp9_F_contig1137.1175.1|Name=mRNA_Ecto-sp9_F_contig1137.1175.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6476bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1137:15103..21578+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1137:15103..21578+ >mRNA_Ecto-sp9_F_contig1137.1175.1 ID=mRNA_Ecto-sp9_F_contig1137.1175.1|Name=mRNA_Ecto-sp9_F_contig1137.1175.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3924bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1137:15103..21578+ (Ectocarpus species9 EcSCA_722f female)back to top |