mRNA_Ecto-sp9_F_contig1137.1174.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1137.1174.1
Unique NamemRNA_Ecto-sp9_F_contig1137.1174.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1137.1174.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 460 bits (1184), Expect = 7.040e-151
Identity = 321/353 (90.93%), Postives = 327/353 (92.63%), Query Frame = 1 
Query:    1 MMSYLAVGNLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLALENGDGTXXXXXXXXXXXXXXXXXXRSVAKKAVPVDKENASAAAVAKPAGSRANKASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANXXXXXXXXXXXXXXXXXXXXQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRXXXXXXXXXXXXXXXXXXAQPPPP 1059
            MM+YLAVG+LLEDTITRSAQNQNGAD ELSWLRRRLDSERRDPRARGKLALEN DG     XXXXXXXXXX    RSVAKKA PVDKENASAAAVAKPAGSRA+K  PTGMSVLQLRRFLR IGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLN DGS+TTSSAAGDAT PKRPLRESLSS  XXXXXXXXXXXXXXXXXXX QQVP VTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAK+QQ  PAPAAAST+AESLPTPVTPPSLR XXXXXXXXXXXXXXX  AQPPPP
Sbjct:    1 MMNYLAVGDLLEDTITRSAQNQNGADGELSWLRRRLDSERRDPRARGKLALENVDGISSGGXXXXXXXXXXQTQPRSVAKKAAPVDKENASAAAVAKPAGSRASKVPPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQPRAAVECAGERRKTDAMLAVAESMLNLDGSNTTSSAAGDATTPKRPLRESLSSXXXXXXXXXXXXXXXXXXXXXQQQVP-VTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKQQQQ-PAPAAASTKAESLPTPVTPPSLRPXXXXXXXXXXXXXXXRAAQPPPP 351
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BLAST of mRNA_Ecto-sp9_F_contig1137.1174.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB0_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 2.940e-71
Identity = 172/180 (95.56%), Postives = 172/180 (95.56%), Query Frame = 1 
Query:  520 MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANXXXXXXXXXXXXXXXXXXXXQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRXXXXXXXXXXXXXXXXXXAQPPPP 1059
            MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSAN XXXXXXXXXXXXXXXXXX QQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLR   XXXXXXXXXXXXX  AQ PPP
Sbjct:    1 MLAVAESMLNPDGSSTTSSAAGDATAPKRPLRESLSSANNXXXXXXXXXXXXXXXXXXQQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRPPVXXXXXXXXXXXXXRAAQSPPP 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1137.1174.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
SAP7.040e-15190.93domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.940e-7195.56protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1137contigEcto-sp9_F_contig1137:12585..14944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-26_005470.1
Exons4
Model size1059
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1137.1174.1prot_Ecto-sp9_F_contig1137.1174.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1137 12585..14944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928384.9036095-CDS-Ecto-sp9_F_contig1137:12584..128991622928384.9036095-CDS-Ecto-sp9_F_contig1137:12584..12899Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 12585..12899 +
1692277853.7363558-CDS-Ecto-sp9_F_contig1137:12584..128991692277853.7363558-CDS-Ecto-sp9_F_contig1137:12584..12899Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 12585..12899 +
1622928384.9219506-CDS-Ecto-sp9_F_contig1137:13475..136531622928384.9219506-CDS-Ecto-sp9_F_contig1137:13475..13653Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 13476..13653 +
1692277853.747691-CDS-Ecto-sp9_F_contig1137:13475..136531692277853.747691-CDS-Ecto-sp9_F_contig1137:13475..13653Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 13476..13653 +
1622928384.9360425-CDS-Ecto-sp9_F_contig1137:14099..144791622928384.9360425-CDS-Ecto-sp9_F_contig1137:14099..14479Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 14100..14479 +
1692277853.756218-CDS-Ecto-sp9_F_contig1137:14099..144791692277853.756218-CDS-Ecto-sp9_F_contig1137:14099..14479Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 14100..14479 +
1622928384.952379-CDS-Ecto-sp9_F_contig1137:14758..149441622928384.952379-CDS-Ecto-sp9_F_contig1137:14758..14944Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 14759..14944 +
1692277853.7645137-CDS-Ecto-sp9_F_contig1137:14758..149441692277853.7645137-CDS-Ecto-sp9_F_contig1137:14758..14944Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1137 14759..14944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1137.1174.1

>prot_Ecto-sp9_F_contig1137.1174.1 ID=prot_Ecto-sp9_F_contig1137.1174.1|Name=mRNA_Ecto-sp9_F_contig1137.1174.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=353bp
MMSYLAVGNLLEDTITRSAQNQNGADDELSWLRRRLDSERRDPRARGKLA
LENGDGTSSSGGSGSSSSSGSQPQPRSVAKKAVPVDKENASAAAVAKPAG
SRANKASPTGMSVLQLRRFLRAIGQPTSGLKPVLSARLEKAVASGAVKTF
VDTARAQPRAAVECAGERRKTDAMLAVAESMLNPDGSSTTSSAAGDATAP
KRPLRESLSSANNERSSRSSAGDSVDKSQPLQQQVPPVTPATSKLSGQEQ
DAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAA
KKQQQQPAPAAASTEAESLPTPVTPPSLRPPVPSSPAPMPPASPPRAAQP
PPP
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mRNA from alignment at Ecto-sp9_F_contig1137:12585..14944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1137.1174.1 ID=mRNA_Ecto-sp9_F_contig1137.1174.1|Name=mRNA_Ecto-sp9_F_contig1137.1174.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1137:12585..14944+ (Ectocarpus species9 EcSCA_722f female)
ATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGACACCATCACGCG
CAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGCAAACTCGCC
CTCGAGAACGGCGACGGTACCAGCAGCAGCGGCGGCAGCGGCAGCAGCAG
CAGCAGCGGCAGCCAGCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGTGC
CCGTGGACAAGGAGAATGCTTCTGCTGCTGCTGTGGCGAAACCCGCTGGG
TCTCGCGCTAACAAGGTGCGGTTTGTGTTGCCTTGATGTCAACTCGACGA
GTCCATGTGTTTTGGCGCAATAAAAAAAAAAAAGATACAATATCGTCCCA
GCCGGAGTTAGTTGGCGGTCTGCCCCGATGTGAACGATAGATCGCACTAG
TCATTGACCGTGCCTCGCCCGTAGTAGTGGTATTGGGTAGACAGGTGACG
GAAAAACTAAGAGTCCTGCCGTGGTATGTTTTCTATCTACACCACAGCAG
TACTCACGGTAGGACACGTACGTGCTGCCGGCTCCTTGCTCGGGGTATCT
TTTGGCGCGAATTTCCGGTTGGCCTAGAGAACATTACAATGAGAGAGTCT
CTCTCCCGACCTCCTCCCCCCGATAACGCGCCGAAAAGCAGGGCTTATTT
CCTGTGTTGCTGCAGTAAGCACGTCTTTGCTCGAGCCCTCTCTGCCGCGT
TCGCAGCAGTACCAGCAGCACACAACTTAGCCCATAAGAGCACACACTTG
GGCGAAAACAGCCGCAAGGCCGTTTGTTAGTGAAGTCTATGTCCCGTTGG
ACCATAATCATCTCGCCCCCTCCCCTACACTCCTCTGGCAGGCGTCTCCC
ACGGGCATGAGCGTACTTCAGCTACGGCGCTTCTTGCGGGCCATCGGGCA
GCCCACGTCGGGCCTGAAGCCGGTCCTCTCCGCCCGCCTTGAGAAGGCCG
TGGCCTCGGGCGCCGTGAAGACGTTCGTCGACACCGCAAGGGCGCAGCCG
CGCGCAGCGGTTGAGTGCGGTGAGCGAGCGCATGCATTTCCGCGTGCGCC
TGTACTTGTGTTTTGTGTATTTTGGTATGTAGCATCGATGGCGAACTGGG
TGCCCAGTGATACAGCAAGTCAGGTCTCTTTCCAGGCACTGCAGGACGCA
GATTCGTTTTTGTGTCCGCCGGCTCCCCCGTCAAGGAGAGGTGTGCATGC
GTGTGTGGCATGGCCAAAGGTACTGCTGTTGCTGCTGTGTACTCTTGAAG
TACTACATGGCGAAACGCTAGTTACTATTGCTGTGAAAAACTGCAAGTAC
AGAGTAGCTTGCTATTTAATAAAATAATCAAGCACGTACGACCGACCCTT
TTTGCGTTCGTTGTTTTTAGAGGCACGCCTACGGAAACATTCTGAAGGCA
CCACAACTTCCCCCTACCAATGCGTCCCTCAACGATACCTATGCCGGACG
CAATCCTGCGCGCAGCTGGCGAGCGTCGCAAGACCGATGCCATGTTGGCG
GTGGCCGAGTCTATGCTCAACCCGGACGGCAGCAGCACCACTTCTTCCGC
TGCCGGCGACGCGACGGCGCCGAAGAGGCCGCTCCGCGAATCGCTGTCCA
GCGCCAACAACGAGCGCAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGAT
AAGTCGCAGCCGCTTCAGCAGCAGGTGCCGCCGGTGACACCGGCGACCTC
CAAGCTGTCGGGGCAGGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCTG
CGGCGAAGAGGTCTGCGTCTCCGGAGAAGAAGCTGCCGTACCAGGACGAC
GACACGCCCAACACCAAGGGCGCTCGCCTCAAGAAGGAGATGGAGGTGTG
GTTCCGTGCAGAGTGGGTCGATTGATTGGGAACTCGGGGTCTGACGATCG
ATTGATGAGTGTTCTGCTAGTGGTTGAGCAAATGTCCCAGAACTTGTGTG
CTGGCAACTACGGATGCGGAAGGCAAATCATTGCAGATTCATTGTGCGGG
CTGTGTTAGTAGGACAGTGAAAAATACTCGTCGTGTCGTGGCTTCACATC
AAGGCGTTCACAATCATGGTGTGATATGCCCTTCCGTGCCCCCGCCCTCT
CCTCTACTCCTATCCCCCCGTCAGGACCGCCTTGCCAGGCAGAAGGCGGC
GAAGAAGCAGCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGACCGAGGCCG
AGTCGCTCCCGACGCCCGTCACCCCGCCGTCGCTCCGCCCCCCGGTGCCC
TCCAGCCCGGCCCCGATGCCCCCGGCCTCGCCGCCCCGCGCCGCGCAGCC
CCCCCCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1137:12585..14944+

>mRNA_Ecto-sp9_F_contig1137.1174.1 ID=mRNA_Ecto-sp9_F_contig1137.1174.1|Name=mRNA_Ecto-sp9_F_contig1137.1174.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2118bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1137:12585..14944+ (Ectocarpus species9 EcSCA_722f female)
ATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGAGGACACCATCACGCG
CAGCGCCCAGAATCAGAACGGTGCGGACGACGAGCTCAGCTGGCTGCGCA
GGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCCCGAGGCAAACTCGCC
CTCGAGAACGGCGACGGTACCAGCAGCAGCGGCGGCAGCGGCAGCAGCAG
CAGCAGCGGCAGCCAGCCGCAGCCCCGCTCGGTGGCGAAGAAAGCGGTGC
CCGTGGACAAGGAGAATGCTTCTGCTGCTGCTGTGGCGAAACCCGCTGGG
TCTCGCGCTAACAAGATGATGAGCTACCTCGCCGTCGGAAATCTCCTGGA
GGACACCATCACGCGCAGCGCCCAGAATCAGAACGGTGCGGACGACGAGC
TCAGCTGGCTGCGCAGGCGGCTCGACAGCGAACGGCGTGACCCCCGCGCC
CGAGGCAAACTCGCCCTCGAGAACGGCGACGGTACCAGCAGCAGCGGCGG
CAGCGGCAGCAGCAGCAGCAGCGGCAGCCAGCCGCAGCCCCGCTCGGTGG
CGAAGAAAGCGGTGCCCGTGGACAAGGAGAATGCTTCTGCTGCTGCTGTG
GCGAAACCCGCTGGGTCTCGCGCTAACAAGGCGTCTCCCACGGGCATGAG
CGTACTTCAGCTACGGCGCTTCTTGCGGGCCATCGGGCAGCCCACGTCGG
GCCTGAAGCCGGTCCTCTCCGCCCGCCTTGAGAAGGCCGTGGCCTCGGGC
GCCGTGAAGACGTTCGTCGACACCGCAAGGGCGCAGCCGCGCGCAGCGGT
TGAGTGCGGCGTCTCCCACGGGCATGAGCGTACTTCAGCTACGGCGCTTC
TTGCGGGCCATCGGGCAGCCCACGTCGGGCCTGAAGCCGGTCCTCTCCGC
CCGCCTTGAGAAGGCCGTGGCCTCGGGCGCCGTGAAGACGTTCGTCGACA
CCGCAAGGGCGCAGCCGCGCGCAGCGGTTGAGTGCGCTGGCGAGCGTCGC
AAGACCGATGCCATGTTGGCGGTGGCCGAGTCTATGCTCAACCCGGACGG
CAGCAGCACCACTTCTTCCGCTGCCGGCGACGCGACGGCGCCGAAGAGGC
CGCTCCGCGAATCGCTGTCCAGCGCCAACAACGAGCGCAGCTCCCGGTCT
TCGGCCGGCGACAGCGTCGATAAGTCGCAGCCGCTTCAGCAGCAGGTGCC
GCCGGTGACACCGGCGACCTCCAAGCTGTCGGGGCAGGAGCAGGACGCGG
TCGTTGCGAAGATTCGGTCTGCGGCGAAGAGGTCTGCGTCTCCGGAGAAG
AAGCTGCCGTACCAGGACGACGACACGCCCAACACCAAGGGCGCTCGCCT
CAAGAAGGAGATGGAGCTGGCGAGCGTCGCAAGACCGATGCCATGTTGGC
GGTGGCCGAGTCTATGCTCAACCCGGACGGCAGCAGCACCACTTCTTCCG
CTGCCGGCGACGCGACGGCGCCGAAGAGGCCGCTCCGCGAATCGCTGTCC
AGCGCCAACAACGAGCGCAGCTCCCGGTCTTCGGCCGGCGACAGCGTCGA
TAAGTCGCAGCCGCTTCAGCAGCAGGTGCCGCCGGTGACACCGGCGACCT
CCAAGCTGTCGGGGCAGGAGCAGGACGCGGTCGTTGCGAAGATTCGGTCT
GCGGCGAAGAGGTCTGCGTCTCCGGAGAAGAAGCTGCCGTACCAGGACGA
CGACACGCCCAACACCAAGGGCGCTCGCCTCAAGAAGGAGATGGAGGACC
GCCTTGCCAGGCAGAAGGCGGCGAAGAAGCAGCAGCAGCAGCCCGCCCCG
GCCGCCGCTTCGACCGAGGCCGAGTCGCTCCCGACGCCCGTCACCCCGCC
GTCGCTCCGCCCCCCGGTGCCCTCCAGCCCGGCCCCGATGCCCCCGGCCT
CGCCGCCCCGCGCCGCGCAGCCCCCCCCCCCCGACCGCCTTGCCAGGCAG
AAGGCGGCGAAGAAGCAGCAGCAGCAGCCCGCCCCGGCCGCCGCTTCGAC
CGAGGCCGAGTCGCTCCCGACGCCCGTCACCCCGCCGTCGCTCCGCCCCC
CGGTGCCCTCCAGCCCGGCCCCGATGCCCCCGGCCTCGCCGCCCCGCGCC
GCGCAGCCCCCCCCCCCC
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