mRNA_Ecto-sp9_F_contig11366.1171.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11366.1171.1
Unique NamemRNA_Ecto-sp9_F_contig11366.1171.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: CP-type (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTY8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.180e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKK AKKNPTTGRK+KDPGIPNSLPFKEE
Sbjct:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKGAKKNPTTGRKVKDPGIPNSLPFKEE 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: Nug1, (nuclear ribosome-associated GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE27_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.660e-14
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MVKKKGKSGRT+LKQKYKI ++V EH R+Q+K+AKKNP   +K KDPGIPNS+PFK E
Sbjct:    1 MVKKKGKSGRTTLKQKYKIDRKVKEHKRQQRKDAKKNPHLHKK-KDPGIPNSIPFKAE 57
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.630e-13
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPT---TGRKIKDPGIPNSLPFKEE 174
            MVKKKGKS RT+LKQK+K++KRV EHHRKQKKEAK+      T +K +DPGIPNS PFK E
Sbjct:   13 MVKKKGKSKRTTLKQKFKVQKRVKEHHRKQKKEAKRKGQQVGTSKKKRDPGIPNSWPFKAE 73
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: GN3L_Grn1 (domain-containing protein n=2 Tax=Absidia glauca TaxID=4829 RepID=A0A163K2Z5_ABSGL)

HSP 1 Score: 65.9 bits (159), Expect = 1.880e-12
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MV KK KS R + ++KYKI+KRV EHHR  +KE KKNP   RK KDPGIPN+ PFKEE
Sbjct:    1 MVAKKYKSKRGTAREKYKIEKRVREHHRNLRKEQKKNPHLRRKPKDPGIPNNWPFKEE 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: GNL3L/Grn1 (putative GTPase-domain-containing protein n=2 Tax=Absidia repens TaxID=90262 RepID=A0A1X2INY3_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 2.670e-12
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MV KK KS R + ++ YKI+KRV EHHRK +KE KKNP   RK KDPGIPN+ PFKEE
Sbjct:    1 MVPKKYKSKRGTAREYYKIEKRVREHHRKLRKEQKKNPQLRRKPKDPGIPNNWPFKEE 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: GN3L_Grn1 (domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BH45_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 2.880e-12
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MV KK KS R     +YKI+K+V EHH+KQKK AKKNP   R  KDPGIPNS PFKEE
Sbjct:    1 MVAKKPKSKRVKAAHRYKIEKKVKEHHKKQKKLAKKNPQKKRAHKDPGIPNSWPFKEE 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: GN3L_Grn1 (domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162U0T6_PHYB8)

HSP 1 Score: 64.3 bits (155), Expect = 9.660e-12
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MV KK +S R     +YKI KRV EHHRK+KK AKKNP + R  KDPGIPNS PFKEE
Sbjct:    1 MVAKKPQSKRIKAAHRYKIIKRVKEHHRKEKKLAKKNPKSNRTKKDPGIPNSWPFKEE 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHD9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.550e-11
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTG-----RKIKDPGIPNSLPFKEE 174
            MVKKKGKS R +LKQKYKI+KRV EHHRK +KEAK+   +G     +K +DPGIPN  PFKE+
Sbjct:    1 MVKKKGKSKRQTLKQKYKIEKRVTEHHRKLRKEAKRAEISGHGTQKKKKRDPGIPNQWPFKED 63
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GG39_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.510e-11
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIPNSLPFKEE 174
            MVKKKGKS R  LK KYKI++RV E HRKQ+K AKK      K KDPGIPNS PFK E
Sbjct:    1 MVKKKGKSKRVCLKDKYKIQRRVTETHRKQRKAAKKGLGNKNKSKDPGIPNSWPFKAE 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWC6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.880e-11
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTG-----RKIKDPGIPNSLPFKEE 174
            MVKKKGKS R++LK KYKI++RV E HRKQKK+AK++   G     +K KDPGIPNS PFK++
Sbjct:    1 MVKKKGKSKRSTLKDKYKIQRRVTETHRKQKKQAKRDTANGVVRHDKKKKDPGIPNSWPFKQD 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11366.1171.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CP-type8.180e-2596.55G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
Nug1,5.660e-1472.41nuclear ribosome-associated GTPase n=1 Tax=Tribone... [more]
Hypothetical3.630e-1368.85protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
GN3L_Grn11.880e-1265.52domain-containing protein n=2 Tax=Absidia glauca T... [more]
GNL3L/Grn12.670e-1265.52putative GTPase-domain-containing protein n=2 Tax=... [more]
GN3L_Grn12.880e-1265.52domain-containing protein n=1 Tax=Apophysomyces os... [more]
GN3L_Grn19.660e-1265.52domain-containing protein n=1 Tax=Phycomyces blake... [more]
Hypothetical1.550e-1163.49protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical2.510e-1167.24protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
Hypothetical2.880e-1161.90protein (Fragment) n=1 Tax=Amphiprora paludosa Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11366contigEcto-sp9_F_contig11366:1292..2332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.9e-22
Seed eggNOG ortholog2880.D7G1C4
Preferred nameGNL3
KEGG koko:K14538
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000459,GO:0000460,GO:0000463,GO:0000466,GO:0000467,GO:0000469,GO:0000470,GO:0001652,GO:0001654,GO:0001882,GO:0001883,GO:0002119,GO:0002164,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007346,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009908,GO:0009987,GO:0010073,GO:0010074,GO:0010077,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017145,GO:0019001,GO:0019219,GO:0019222,GO:0019827,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030054,GO:0030154,GO:0030684,GO:0030687,GO:0030856,GO:0031123,GO:0031125,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031503,GO:0031647,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033233,GO:0033234,GO:0033235,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040008,GO:0040014,GO:0042127,GO:0042254,GO:0042273,GO:0042886,GO:0043010,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043496,GO:0043628,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045595,GO:0045604,GO:0045664,GO:0045682,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045995,GO:0046483,GO:0046907,GO:0048027,GO:0048285,GO:0048316,GO:0048366,GO:0048367,GO:0048437,GO:0048444,GO:0048468,GO:0048507,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048638,GO:0048699,GO:0048731,GO:0048825,GO:0048827,GO:0048831,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0055044,GO:0060041,GO:0060255,GO:0060284,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090073,GO:0090304,GO:0090305,GO:0090307,GO:0090501,GO:0090503,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0097367,GO:0098727,GO:0099402,GO:0140014,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1902679,GO:1902680,GO:1902850,GO:1902893,GO:1902895,GO:1903047,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904814,GO:1904816,GO:1905392,GO:1990904,GO:2000024,GO:2000026,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.guanine nucleotide-binding protein-like
EggNOG OGsCOG1161@1,KOG2484@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNug1, nuclear ribosome-associated GTPase
Ec32 orthologEc-00_005580.1
Exons2
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928383.2980046-CDS-Ecto-sp9_F_contig11366:1291..14231622928383.2980046-CDS-Ecto-sp9_F_contig11366:1291..1423Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11366 1292..1423 -
1692277853.6396458-CDS-Ecto-sp9_F_contig11366:1291..14231692277853.6396458-CDS-Ecto-sp9_F_contig11366:1291..1423Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11366 1292..1423 -
1622928383.3163967-CDS-Ecto-sp9_F_contig11366:2266..23321622928383.3163967-CDS-Ecto-sp9_F_contig11366:2266..2332Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11366 2267..2332 -
1692277853.652926-CDS-Ecto-sp9_F_contig11366:2266..23321692277853.652926-CDS-Ecto-sp9_F_contig11366:2266..2332Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11366 2267..2332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11366.1171.1prot_Ecto-sp9_F_contig11366.1171.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11366 1292..2332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11366.1171.1

>prot_Ecto-sp9_F_contig11366.1171.1 ID=prot_Ecto-sp9_F_contig11366.1171.1|Name=mRNA_Ecto-sp9_F_contig11366.1171.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=66bp
MVKKKGKSGRTSLKQKYKIKKRVAEHHRKQKKEAKKNPTTGRKIKDPGIP
NSLPFKEEASCLRRG*
back to top

mRNA from alignment at Ecto-sp9_F_contig11366:1292..2332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11366.1171.1 ID=mRNA_Ecto-sp9_F_contig11366.1171.1|Name=mRNA_Ecto-sp9_F_contig11366.1171.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1041bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11366:1292..2332- (Ectocarpus species9 EcSCA_722f female)
ATGGTGAAGAAGAAAGGAAAGTCGGGGCGGACGAGCCTGAAGCAGAAGTA
CAAGATCAAGAAGAGGGTGAGAATCCAGCACTACCGGCGGCACAATCAAA
CACCACGTAATGAAGCAGCCATGTAGGGCTGCTGCTGCACCTGATGTAGA
GTCATTTTGTGCAACCCTTGACTGCCAAAAACATGAGACCGTCAAGGAAG
ACGCGAGTTCTTCAATCTTTCCGGGATCTCTGACTGCTATAGATATGATA
CAGCGCGCACGGTGCCTTCTACCTTTCAACTGATGTGGTGCTGAGCTATC
GTCAAGCTCTCGAGCACGTACTTGTATATACTGCTTGTAAGAGGTTTAGG
CGATGCCGTCTACATTGTTTGTCTAGTGGCACCCGAGCCATGCGCATTCA
AAAAAAGCGGACCAGGTAGGCTCGACAGACAAACCTAACTCCAGTCCTCT
CTCAGGTAGATTTTGCTCTGATAACCACGTGCAAAATCTACGTATTTTGG
TGTTGATTGACATACGCAGGAAATGTTCCGCTCATCGAATCCCTGCACTT
GTCTGCTAATACGGCGGTAGTTGCACCGCGTTTTTGTCCGGTTGCTTGTG
CTGCCGCCGCTACCGCCGCCGCTGCTGCTTCTGCCTTGCCATAGGGCTGG
TTGAAGCCCCTCTGCCTGTCTTTATTGTATTCCAGATTTAGTTCCGCCCG
CCTTGTCCTCGCTGAAACGCACGCTGGCCCCCCAAGTGACCAGGGTCGAA
CCACTGAATATCTTTTACACCCGGCCATTGTGAGACGCATGTGCTCATCG
TGTAGTAGTGTACCCGTGCTATCTCCCGTGTATTGAACCAACCAAACCTG
TTGCTACGAACGGTAGCTTGTTCAACACGTTCCTTTGTCCCCCATCTCTT
GGTTGAAAGGTCGCTGAGCATCACCGCAAGCAGAAGAAGGAGGCCAAGAA
GAACCCCACCACCGGCCGCAAGATTAAGGACCCCGGAATTCCGAACTCGC
TCCCCTTCAAGGAAGAGGCGAGTTGCCTCCGTCGGGGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11366:1292..2332-

>mRNA_Ecto-sp9_F_contig11366.1171.1 ID=mRNA_Ecto-sp9_F_contig11366.1171.1|Name=mRNA_Ecto-sp9_F_contig11366.1171.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11366:1292..2332- (Ectocarpus species9 EcSCA_722f female)
ATGGTGAAGAAGAAAGGAAAGTCGGGGCGGACGAGCCTGAAGCAGAAGTA
CAAGATCAAGAAGAGGATGGTGAAGAAGAAAGGAAAGTCGGGGCGGACGA
GCCTGAAGCAGAAGTACAAGATCAAGAAGAGGGTCGCTGAGCATCACCGC
AAGCAGAAGAAGGAGGCCAAGAAGAACCCCACCACCGGCCGCAAGATTAA
GGACCCCGGAATTCCGAACTCGCTCCCCTTCAAGGAAGAGGCGAGTTGCC
TCCGTCGGGGTTGAGTCGCTGAGCATCACCGCAAGCAGAAGAAGGAGGCC
AAGAAGAACCCCACCACCGGCCGCAAGATTAAGGACCCCGGAATTCCGAA
CTCGCTCCCCTTCAAGGAAGAGGCGAGTTGCCTCCGTCGGGGTTGA
back to top