mRNA_Ecto-sp9_F_contig1136.1165.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1136.1165.1
Unique NamemRNA_Ecto-sp9_F_contig1136.1165.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1136.1165.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 1.250e-133
Identity = 204/209 (97.61%), Postives = 206/209 (98.56%), Query Frame = 1 
Query:    1 MRIAVAALGLGLASIIPGTVDGFVVPAGRVVDVVPSPRSDSLHRAAVVGDRSRLGLSGLSGRNPVSTLSRDGGARQTSTAGVTATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 627
            MRIAVAALGLGLAS+IPGTVDGFVVPAGRVVDVVPS RSDSLHRA V+GDRSRLGLSGLS RNPVSTLSRDGGARQTSTAGVTATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ
Sbjct:    1 MRIAVAALGLGLASVIPGTVDGFVVPAGRVVDVVPSSRSDSLHRAGVMGDRSRLGLSGLSERNPVSTLSRDGGARQTSTAGVTATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1136.1165.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.250e-13397.61protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1136contigEcto-sp9_F_contig1136:10522..15147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002210.1
Exons5
Model size1207
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1136.1165.1prot_Ecto-sp9_F_contig1136.1165.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1136 11099..15147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928382.4717643-UTR-Ecto-sp9_F_contig1136:10521..110981622928382.4717643-UTR-Ecto-sp9_F_contig1136:10521..11098Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1136 10522..11098 -
1692277853.395148-UTR-Ecto-sp9_F_contig1136:10521..110981692277853.395148-UTR-Ecto-sp9_F_contig1136:10521..11098Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1136 10522..11098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928382.4853916-CDS-Ecto-sp9_F_contig1136:11098..112061622928382.4853916-CDS-Ecto-sp9_F_contig1136:11098..11206Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 11099..11206 -
1692277853.4027717-CDS-Ecto-sp9_F_contig1136:11098..112061692277853.4027717-CDS-Ecto-sp9_F_contig1136:11098..11206Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 11099..11206 -
1622928382.4991384-CDS-Ecto-sp9_F_contig1136:11962..120651622928382.4991384-CDS-Ecto-sp9_F_contig1136:11962..12065Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 11963..12065 -
1692277853.4101727-CDS-Ecto-sp9_F_contig1136:11962..120651692277853.4101727-CDS-Ecto-sp9_F_contig1136:11962..12065Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 11963..12065 -
1622928382.510965-CDS-Ecto-sp9_F_contig1136:12575..128211622928382.510965-CDS-Ecto-sp9_F_contig1136:12575..12821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 12576..12821 -
1692277853.4176052-CDS-Ecto-sp9_F_contig1136:12575..128211692277853.4176052-CDS-Ecto-sp9_F_contig1136:12575..12821Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 12576..12821 -
1622928382.52788-CDS-Ecto-sp9_F_contig1136:13654..137751622928382.52788-CDS-Ecto-sp9_F_contig1136:13654..13775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 13655..13775 -
1692277853.424938-CDS-Ecto-sp9_F_contig1136:13654..137751692277853.424938-CDS-Ecto-sp9_F_contig1136:13654..13775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 13655..13775 -
1622928382.5448167-CDS-Ecto-sp9_F_contig1136:15095..151471622928382.5448167-CDS-Ecto-sp9_F_contig1136:15095..15147Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 15096..15147 -
1692277853.4356172-CDS-Ecto-sp9_F_contig1136:15095..151471692277853.4356172-CDS-Ecto-sp9_F_contig1136:15095..15147Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1136 15096..15147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1136.1165.1

>prot_Ecto-sp9_F_contig1136.1165.1 ID=prot_Ecto-sp9_F_contig1136.1165.1|Name=mRNA_Ecto-sp9_F_contig1136.1165.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=210bp
MRIAVAALGLGLASIIPGTVDGFVVPAGRVVDVVPSPRSDSLHRAAVVGD
RSRLGLSGLSGRNPVSTLSRDGGARQTSTAGVTATALSARAGRGAEEGGQ
EDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDP
IRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKE
DLAKDAWLQ*
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mRNA from alignment at Ecto-sp9_F_contig1136:10522..15147-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1136.1165.1 ID=mRNA_Ecto-sp9_F_contig1136.1165.1|Name=mRNA_Ecto-sp9_F_contig1136.1165.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4626bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1136:10522..15147- (Ectocarpus species9 EcSCA_722f female)
ATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATCCC
AGGTTTGCATTTTTTTCTCGGTTGAAGACACATCGGATATGCATACCATG
CCATGGTAAGCATGCGTTGACTGCTGTGCCGCCCTCAGCCCGTAGGCCTG
GAGACTAGGAAGCCGTGTGGCTATTGGGGGCTGCAATGGCTCCCGTGCAC
CACAATCCAGTCATTATAGCAAAAGTTGCGGGTTGATGACTCAAGACGGT
GTGGGGGGGGAGATGATCCAGGTTACGGAGCTGTAACGTTGAGTGCATCC
CGTAGTACGGTGTGGTAGACTGACTGGACTAAACACAAAGGCATCAACAG
CATCGTATTTCAAACCGCACGAGTTGCGGAGGGTACTGTGGTGGAGTGAT
CTAGCAGCGTCATCTGACACATGATCGCGCATCAGGGAATGCAGCCGCTG
CTGCTGTGCAAACGCACATGAACATGACCTCTCGAACTTGTTACTTGTAC
TATCGCCCCCCGTTGATATCTACAGTAAACCACCAGAGCAGCTGGCTCTT
GCAGAATCTCGCTGTTCTTCGCAATTGGTCGGAATTATTCTGGTTTTTGT
TTTTCTCTGACTCTGGAACTTCGTATCTATGGCATCGATAATGGAGAAGA
TGGAGCACTGGACAGAGGCCAGATATTTTTGTTTTATCCCTGGTGCGCCC
TCAAAGGCGGCGGCTAGCTATTCCTTTGTGTTCATCAGTATGACCGCAGC
CAGCCACAGGCAGCAGCGCACGCAAACGGAGTGAATGCACACATTTCGTT
GCAGAAAACCTTGATGAAGGGCCGCATCTGCAGATAATATGATTGGCCCA
CGAAGGGAGCATAGCAGGTCTCTGTTGCTGTCCGTGCAATGGTGTACATG
TTGTAGCCACATTTGGCAACGAGCAACTGCGGTGCCGTGCATGAGGTGTG
GTAGTTAGGACCGATGGTGGTCACAGTTGCCAAAATGCCAACAATCCTAC
CTTGTCGGTAAACGTACTTGTTGTGTTGTTCGTTTGTACACATGGCTGCC
ATTTGTTTGCGTCAGCGCGGCAAGGACGGAGCGTCGCCATGTCCCGGAAC
TACAAGTCGTTGCAGTACCTGCGACGCTGCCGTTGCTGCCGCCGCCACCA
CACACGCAACGCCTCTCCCGTCCAGCAAGATTTCATGCTTCCTTAACTGT
AGACTTACCGGTCGCGGAGGCTTGATTAGTCCATCCGGGGAAGGACGCGG
AAGGGCCAGACTTGATTCACCATCAGAGATGCCAGGCCGCAAACCTGCCT
CTCGTAGAATACTGCCGTGCTTTTGAACGACCCTGTTTGTGTTTGTTCCC
TTGTCCCACCCCATCCAAACAGGTACAGTTGATGGGTTCGTTGTTCCTGC
TGGGAGAGTCGTCGATGTGGTCCCCTCGCCGAGAAGCGATTCTCTACACC
GCGCCGCAGTCGTGGGGGACCGGAGCCGGTTGGGCCTTAGCGGGTACGCG
TGACGGCCTTCTAAATGCTTTGATGCTATCCCTGCCGGTGCACTTGTGCC
TTCATCCCTGTCGAGGATTCTTTCACGGATGTTGACTACTCGTGTTACGT
TTTGGTGTAACCCTCGTTTTGCGTTGTGTGCCTAATTATGGACGGGAAAT
GATGGTGCCACCGCCGTTTGTTCCTCCTCGCGAGCTTTGTACGGCAACCG
GAGTGCATCGGCTTCGGAATCGGTTTGTGATAAATACATTGCCTCGCGAT
GCTCACCGATCCGTCTGTCGGCGAGCGTTTGACAATGTCATCAATCTCCA
TTACCTGAACGTGCGTTGCCGTTCTTTCAGCACCACAACCACGTACGTCC
GCAATACAGGAGCGAGGCACGACGTGGTAGGTAACCGTATCCAGCACTTT
GTGTTGTGATGTTTCCATCCAGACGACAATCAACGCCAGTGAAGACGGCG
AGGTCCCTCATTTTCCAGCAGTGCGCCCATCGCCGGTGCAACCCTGACGA
ACGCACAAGTCGCTATTTCGAACAATTGTAACCCGTGTCGTGCATTAGGT
AACATCGCCGCGTTTGAACCGTTCTGTCCACAGCTTTTCGAATCACTATC
GGTTGCTGTCCTTATCCTAGGAGTGTACACGAAGCTCCGCTTCTGGACCA
CCGGAGTGGAAAGGGAATACAAGCTTCCAGTTTCCTTCCTCCGGACACTT
CTCCTGTGAAGCGCATGCCGTGCGGATCTAAAGGGATTCAGCGAGCGTAG
CTGTACCTGTTGGCGACGACGATGTTGCTCTTGCTGCAAACAATCCGCTC
ACCCTCCCTTACGTTTTCTGTTCCAGTTTAAGCGGAAGGAACCCGGTCTC
GACCCTCAGCCGCGACGGCGGGGCTCGTCAAACTTCCACCGCTGGTGTCA
CGGCAACGGCGTTGAGTGCAAGGGCGGGACGCGGAGCAGAAGAGGGAGGA
CAGGAGGACGGGCCATCTTCCGCTGCTGCAATGAGCGGGGTCGGGAGCGT
CGGAAGCAACGTCCTGCTTCTCGTAGCATCGGTGATGGTGGTGAAGGGTC
TTCTCCTGCCCGAGAATGTTCGGTAAGAAGCACAAACAGACAAAGGGGGG
CGTGCAGAGACAGGGGGGAGGCGCAAGGGGGGTAAGCAGATGAGAGAGAG
GAGGAGGAGGAAAATAGACTAGCAGCGAGAAAATGAATAGACTGGTAGGA
AAATGTGGAAGTATGTAGTCTAGACGGAGCCAGAGTGTTGTTTGAACTGG
ATTCGAGATGCAGAGTGTGGGACAGACTGGCCTTTGAGCCTCGATTTCAG
GTTGGTTGTCGGTCGGCTTCCGTCAATCTCGTACTTCCGCTGTCTCGTTC
TCGTTTTGGGTTCCAAGAGTGCTGACCCCATGGCCCGTGTGTCATGCAAT
TAGTTGGTGCCAAGATTTCCACCTGCCCACGCTGTTGTTCCGTTTCCTTA
TTTGACCTCCTCACCAGATGATTCTCCCTCCACCTCGCCAACTGCCCCCC
CTTTCAGCATTTTCGTGTTCCTCGTTTCCTTTCTATCACCTTCTCCTGTG
TGCATACGTTGACCTTTCCCCAATTGTTTTAGGCACCTGGGCTTTTGTCC
GACCGAGGACCCTATTAGGGGAAGGGACACCCTGCCGTGGAGGATGATGA
TTGAGTCCGGCAGAGAGTGCGGCACCATCCCAGAGGTGCGTTGCAGTGAG
GGTACACGAATATGGCAACCTGAGAAACAGAGAAGACTGTGTCTTCTTGG
GCATATGCGTAGAACTCAAGGATTCGTGAAGAAATTGACGTCGAGGGTAA
AGGCGGTTGACTTCCTGCTGCTGCGTGGATCCGAGGTTTGAATTTTCACA
AGCATCGGAAAACAGCGATCTCGATTTCCTGGATTTTGAATTCCTGGACG
GCTAAGGCGGCAAGCTGAGACAGCATGGCTGTGTGCCATCCACTCACGAC
TATTCCTTTGAGTGAATATCGGAATGCCGCTTTGACGTTTTGTTGAAAGC
GATATCGTGTCGTACGCCTTTGAGTGGGCGACTACGGTATGAGCTCTCAC
CCGTAGTTTCGGAGCAAAGCTCGACTTCAGTGATTCATTTTTCATCAGAG
GTTTTCATAAGCCAGAGTGACGAGAGTGTGGTGCAACGCCTAGATTACTC
CGTACCTTGATTGTAGTTCCGCCCCGTCCTACTCTTCCGTGCTCCGAGGC
CCCCAGTCGGAGCTGCCTAAAGGTCTATGGCTTGGTCACACACCCGAAAC
AGATATCTGGGGACCTGACCTGTTACCCCTGGTCTACAGATGATGTCACT
CACTGCACATTATTGCCACTTCATACACGAAATGAGTGACGTGATCGCTT
CGCGCGAAATGGTATCGACGTCCTCCGCGCGTGTTCGATCCCCGTCATAT
TGTTTTCGTTGGTTCTTGATGTTGCCTCTTTTCTCTTTTAGGTGATGACC
AAGTACGTCACTGCCCCGCTCGCGTTCCCGGGAACGCCTGAGTGGGGCAT
GATGCTCAACACCAAGGAAGACCTTGCCAAGGACGCCTGGCTGCAATAAC
ATTATGATGCCAGCCGGGGTGTGCTCCGTTGTTTCTGCCTTCATCACTTG
CCCCTCCAGCGCAAGCCTGCAGGATGGAGACGCCTCAGTTGATGTCAAAA
CGCGAGTATTCTGTCGTGCAAGCTATTGCCGTCATGGATTGTCCCTGTCG
GGGTAGTGACTTCGTCGTCGAAACAGGCAGCAACTTGAGCATCGAAACAT
CGGACCTCCGAGACACCGGCAGTGGTTGAGTTTTGTACGCCGATGATGTT
GGGCGGAGATCAAGTGTACAGCATTACCTTAGTAATTCCACGACGAGGTC
GAGAGAGCCGTAAACAAGTGTGCAAAGTAGATTACGCTACCGCACGCAGG
ATGCTTCAGCAGCCTACAGTACAGGGGTGCGCGTACCCATCAGCGTCCAC
CTTCTTGTCTGTGAAACACTCTCCCGTATCTGCGCAATACAGGAATGAAT
CAGCAATGGCCTCTCTCCCCTCAGCTGTCGCCCTGTAATTGAAACGTCGA
ACCTGGGAAAAAATGATGTCATTCCGGGGCTTTGACGGAATGTTGGGGAA
TAGCATGCGAAGGAAATGTACGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1136:10522..15147-

>mRNA_Ecto-sp9_F_contig1136.1165.1 ID=mRNA_Ecto-sp9_F_contig1136.1165.1|Name=mRNA_Ecto-sp9_F_contig1136.1165.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1136:10522..15147- (Ectocarpus species9 EcSCA_722f female)
ATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATCCC
AGATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATC
CCAGGTACAGTTGATGGGTTCGTTGTTCCTGCTGGGAGAGTCGTCGATGT
GGTCCCCTCGCCGAGAAGCGATTCTCTACACCGCGCCGCAGTCGTGGGGG
ACCGGAGCCGGTTGGGCCTTAGCGGGTACAGTTGATGGGTTCGTTGTTCC
TGCTGGGAGAGTCGTCGATGTGGTCCCCTCGCCGAGAAGCGATTCTCTAC
ACCGCGCCGCAGTCGTGGGGGACCGGAGCCGGTTGGGCCTTAGCGGTTTA
AGCGGAAGGAACCCGGTCTCGACCCTCAGCCGCGACGGCGGGGCTCGTCA
AACTTCCACCGCTGGTGTCACGGCAACGGCGTTGAGTGCAAGGGCGGGAC
GCGGAGCAGAAGAGGGAGGACAGGAGGACGGGCCATCTTCCGCTGCTGCA
ATGAGCGGGGTCGGGAGCGTCGGAAGCAACGTCCTGCTTCTCGTAGCATC
GGTGATGGTGGTGAAGGGTCTTCTCCTGCCCGAGAATGTTCGTTTAAGCG
GAAGGAACCCGGTCTCGACCCTCAGCCGCGACGGCGGGGCTCGTCAAACT
TCCACCGCTGGTGTCACGGCAACGGCGTTGAGTGCAAGGGCGGGACGCGG
AGCAGAAGAGGGAGGACAGGAGGACGGGCCATCTTCCGCTGCTGCAATGA
GCGGGGTCGGGAGCGTCGGAAGCAACGTCCTGCTTCTCGTAGCATCGGTG
ATGGTGGTGAAGGGTCTTCTCCTGCCCGAGAATGTTCGGCACCTGGGCTT
TTGTCCGACCGAGGACCCTATTAGGGGAAGGGACACCCTGCCGTGGAGGA
TGATGATTGAGTCCGGCAGAGAGTGCGGCACCATCCCAGAGGCACCTGGG
CTTTTGTCCGACCGAGGACCCTATTAGGGGAAGGGACACCCTGCCGTGGA
GGATGATGATTGAGTCCGGCAGAGAGTGCGGCACCATCCCAGAGGTGATG
ACCAAGTACGTCACTGCCCCGCTCGCGTTCCCGGGAACGCCTGAGTGGGG
CATGATGCTCAACACCAAGGAAGACCTTGCCAAGGACGCCTGGCTGCAAT
AAGTGATGACCAAGTACGTCACTGCCCCGCTCGCGTTCCCGGGAACGCCT
GAGTGGGGCATGATGCTCAACACCAAGGAAGACCTTGCCAAGGACGCCTG
GCTGCAATAA
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