mRNA_Ecto-sp9_F_contig1136.1164.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1136.1164.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D8_9PHAE) HSP 1 Score: 627 bits (1617), Expect = 8.110e-216 Identity = 416/455 (91.43%), Postives = 421/455 (92.53%), Query Frame = 1
Query: 271 CGHGGFGGXXGFGHHGVGGXXXXXPXXXXXXXXXXXXXXGXGXXXXXXXXXXXXXXXXXGYRGSAMRLPWMGVLAATAVAGGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXXXX-SRNEYNNYVNGMNNAGRNHEVLPYEAWANGRYRDNRRRESXXXXXXXXXXXXXXXXXXXX-RKHQYGGGXRQHGYGDNRGHTNYAAPAGSNAGYAPPTAPPPYTYGAGGTPANFQSPDYRPPATAPSAPPAYPAXXXXXXXXXXAASAPGQPQAPPPYPGATAPQQGGVYYNQHANK 1629
CGHGGFGG GFGHHG+GGXXXXX XXXXXXXXXXX G XXXXXXXXXXXXXGYRGSAMRLPWMGVLAATAVA GAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQ+SEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXXXX SRNEYNNYVNGMNNAGRNHEVLPYEAWANGRYRDNRRRESXXXXXXXXXXXXXXXXXXXX RKHQYGGG +HGYGDNRGHT YAAPAGSNAGYAPPTA PPYTYGAGG PANFQSPDYRPPATAPSAPPAYPA AASAPGQ PPPYP ATAPQQGGVYY+QHA+K
Sbjct: 31 CGHGGFGGGGGFGHHGIGGXXXXXXXXXXXXXXXXXMGISGGYGMGXXXXXXXXXXXXXGYRGSAMRLPWMGVLAATAVASGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQVSEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNEYNNYVNGMNNAGRNHEVLPYEAWANGRYRDNRRRESXXXXXXXXXXXXXXXXXXXXXRKHQYGGGGSRHGYGDNRGHTKYAAPAGSNAGYAPPTALPPYTYGAGGAPANFQSPDYRPPATAPSAPPAYPATAYPP-----AASAPGQXXXPPPYPRATAPQQGGVYYSQHASK 480
BLAST of mRNA_Ecto-sp9_F_contig1136.1164.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G451_ECTSI) HSP 1 Score: 386 bits (992), Expect = 1.510e-123 Identity = 266/275 (96.73%), Postives = 266/275 (96.73%), Query Frame = 1
Query: 304 FGHHGVGGXXXXXPXXXXXXXXXXXXXXGXGXXXXXXXXXXXXXXXXXGYRGSAMRLPWMGVLAATAVAGGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWAGRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXXXXSRNEYNNYV 1128
FGHHGVGGXXXXX XXXXXXXXXXXXXX XG XXXXXXXXXXXXXGYRGSAMRLPWMGVLAATAVAGGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWA RNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXX SRNEYNNYV
Sbjct: 65 FGHHGVGGXXXXXXXXXXXXXXXXXXXXXXGYGMGXXXXXXXXXXXXXGYRGSAMRLPWMGVLAATAVAGGAAAAYPRGARSQVTWKEGSKQVSAQVGGLTVNVACAQNLKSVSTMSTQDPYVKAKLLVDGYQISEVKSGTHNNGGRNPSWARRNNFFTFYVPSNVPLRKLAVVLEIYDYNTMSADKMIGTCGKIPLQGIADGKMRWWTVTSGGQLQASVFSDVKFNSTKASKSGGQKQHXXXXXXXXXXXXXXXXXXXXXXXX--SRNEYNNYV 337 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1136.1164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1136.1164.1 >prot_Ecto-sp9_F_contig1136.1164.1 ID=prot_Ecto-sp9_F_contig1136.1164.1|Name=mRNA_Ecto-sp9_F_contig1136.1164.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=545bp MPDLSDFGGLGGISGAAGGLGALASLAGSGGRSHGGGGGLGNLGGLGAMGback to top mRNA from alignment at Ecto-sp9_F_contig1136:378..6267+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1136.1164.1 ID=mRNA_Ecto-sp9_F_contig1136.1164.1|Name=mRNA_Ecto-sp9_F_contig1136.1164.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5890bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1136:378..6267+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1136:378..6267+ >mRNA_Ecto-sp9_F_contig1136.1164.1 ID=mRNA_Ecto-sp9_F_contig1136.1164.1|Name=mRNA_Ecto-sp9_F_contig1136.1164.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3270bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1136:378..6267+ (Ectocarpus species9 EcSCA_722f female)back to top |