mRNA_Ecto-sp9_F_contig11357.1162.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11357.1162.1
Unique NamemRNA_Ecto-sp9_F_contig11357.1162.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Farnesyl (pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 505 bits (1301), Expect = 7.690e-177
Identity = 254/270 (94.07%), Postives = 256/270 (94.81%), Query Frame = 1
Query:    1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            +VCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP            L RFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDP SYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLE+VYAKYEEDTHKQIKELIAKVEDIPHAV
Sbjct:  227 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP----------SDLTRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEKVYAKYEEDTHKQIKELIAKVEDIPHAV 486          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 483 bits (1244), Expect = 6.860e-168
Identity = 248/283 (87.63%), Postives = 252/283 (89.05%), Query Frame = 1
Query:    1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQ-------------EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            +VCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKV + +             EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP               FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDP SYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERAS+AQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV
Sbjct:  237 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVGRQKQRQTHPEFRVTQSEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP---------------FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASRAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 504          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Farnesyl (pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF9_9STRA)

HSP 1 Score: 375 bits (963), Expect = 3.130e-126
Identity = 186/268 (69.40%), Postives = 218/268 (81.34%), Query Frame = 1
Query:    7 CRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            CR ++LGWC+EWLQAFFLVADDVMD S TRRGQPCW++VP V++IAIND+FILE+ VFK+L RHF+ E+YYLQL+ELFHDVTYRTEMGQLLDLTSQP+D P         PD   RFT  RY MIV+YKTA+YTFYLPCAIGMIYAGV DP S+ LAR ICC IGE+FQIQDDYLDC+GDP+ IGKVGTDIQD KCSWLVVQALER S AQK  LI NY  D+  KI +VK +Y +LKL +VY  YEE ++K+I+ LI +V+D+P  V
Sbjct:  182 CRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWFRVPHVKQIAINDAFILESLVFKVLNRHFSQESYYLQLMELFHDVTYRTEMGQLLDLTSQPLDKP---------PD-FTRFTKTRYAMIVKYKTAFYTFYLPCAIGMIYAGVSDPSSFALARRICCTIGEYFQIQDDYLDCYGDPKFIGKVGTDIQDMKCSWLVVQALERCSAAQKDELIANYGKDDAEKIGKVKAIYNDLKLADVYHAYEEQSYKEIQGLIEEVKDVPKDV 439          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Farnesyl (pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G4_9STRA)

HSP 1 Score: 363 bits (933), Expect = 5.760e-121
Identity = 179/265 (67.55%), Postives = 212/265 (80.00%), Query Frame = 1
Query:    7 CRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIP 801
            CR ++LGWC+EWLQAFFLVADDVMD S TRRGQPCWY+VP V++IAIND+FILE+ V+++L+RHF+ E+YYLQLVELFHDVTYRTEMGQLLDLTSQP+D P         PD   RFT  RY MIV+YKTA+YTFYLPCAIGMIYA V DP S+ LAR ICC IGE+FQIQDDYLDC+GDP VIGKVGTDIQD KCSWLVVQALE+ +  Q+  L+ NY  ++  KI +VK LY  L L   Y  YEE +H +I+ LIA+V+D+P
Sbjct:  235 CRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWYRVPHVKQIAINDAFILESLVYRVLRRHFSQESYYLQLVELFHDVTYRTEMGQLLDLTSQPLDKP---------PD-FARFTATRYAMIVKYKTAFYTFYLPCAIGMIYASVSDPSSFALARRICCIIGEYFQIQDDYLDCYGDPAVIGKVGTDIQDMKCSWLVVQALEKCTPEQRQQLMDNYGKNDPKKIAKVKALYTALGLPAAYRNYEEQSHGEIQTLIAEVKDVP 489          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXN8_HETAK)

HSP 1 Score: 332 bits (851), Expect = 4.820e-109
Identity = 162/270 (60.00%), Postives = 205/270 (75.93%), Query Frame = 1
Query:    1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            ++ R  +LGWC+EWLQAFFLVADD+MD SLTRRGQPCWY+ P+V+ IAINDSFILE+ VF++LK+HF HE  Y Q++++FH+V Y+TE+GQLLDLTSQP+D P            L RFT  R+R+IV+YKTAYYTFYL  A+GMI +GV +P  Y  A+ ICC IGE+FQIQDDYLDC+GDP VIGKVGTDIQDNKCSWLVVQAL +A  A + +L +NY  D  AKI++VK LY +L L   +  YEE ++K+I  L+  VE +P  +
Sbjct:  210 ELARACVLGWCIEWLQAFFLVADDIMDDSLTRRGQPCWYRKPEVKMIAINDSFILESGVFRLLKKHFGHEETYSQILDVFHEVIYQTELGQLLDLTSQPLDGP----------TDLDRFTVERHRLIVKYKTAYYTFYLSTAMGMIDSGVTEPALYETAKRICCMIGEYFQIQDDYLDCYGDPAVIGKVGTDIQDNKCSWLVVQALAQAQPADRKLLKENYGKDSAAKIKKVKALYEQLGLAAQFHAYEEASYKEINRLLDSVEGLPREI 469          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA81_PHATC)

HSP 1 Score: 327 bits (839), Expect = 5.600e-109
Identity = 165/270 (61.11%), Postives = 205/270 (75.93%), Query Frame = 1
Query:    1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            +  R ++LGW +E+LQAFFLVADDVMD S TRRGQPCWYK+P VQ +AINDSF+LE+ VF +L+RHF HE +YL L+EL  DVT++TE+GQLLDLTSQP      +H   PH   L RFT  RY+ IV+YKTA+Y+FYLP A+GMI +GV D  +   AR ICC +GE+FQIQDDYLDCFGDP VIGKVGTDIQDNKCSWLVVQAL R + AQ+ VL  +Y   ++ K+E VK LYREL+L EV+  YEED++ QI+  + +V  +P  V
Sbjct:   66 ETARAAVLGWAIEFLQAFFLVADDVMDDSQTRRGQPCWYKLPDVQLVAINDSFLLESFVFAILRRHFGHEPFYLHLLELMLDVTHKTELGQLLDLTSQP-----PQHHDQPHHVDLDRFTLTRYQQIVKYKTAFYSFYLPVAMGMILSGVTDAPALAQARTICCLMGEYFQIQDDYLDCFGDPAVIGKVGTDIQDNKCSWLVVQALARCTPAQRDVLQNHYGQSDDQKVETVKSLYRELQLVEVFHAYEEDSYAQIQAQLEQVHAVPKQV 330          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV8_GLOUD)

HSP 1 Score: 327 bits (838), Expect = 9.360e-109
Identity = 167/267 (62.55%), Postives = 203/267 (76.03%), Query Frame = 1
Query:   10 RGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            + SILGWC+EWLQAFFLVADD+MD S+ RRGQPCWY+ PKVQ IAIND+F+LE  VF++LK+HF  E++YL LVELFHDV YRTE+GQLLDLTSQP D           PD L RFT  RYR +V +KTAYYTFYL  A  M+  GV D  S+ LA+ IC RIGE+FQIQDD+LDC+GD +VIGK+GTDIQDNKCSWLVVQAL+RAS AQK  L  +Y  D+ A I +VK++Y +L L  VY  YE+ T+K+I + IA+V+ IP  V
Sbjct:   79 KASILGWCIEWLQAFFLVADDIMDASVLRRGQPCWYRNPKVQMIAINDAFLLETFVFQILKKHFRSESFYLPLVELFHDVIYRTELGQLLDLTSQPQDR---------EPD-LARFTLERYRKVVVFKTAYYTFYLSVACAMLLRGVVDEPSHELAKKICVRIGEYFQIQDDFLDCYGDAQVIGKIGTDIQDNKCSWLVVQALQRASGAQKETLKAHYGKDDPAAIAKVKQVYADLGLAAVYHAYEDATYKEITDEIARVDKIPSEV 335          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU78_9STRA)

HSP 1 Score: 328 bits (840), Expect = 4.680e-107
Identity = 164/268 (61.19%), Postives = 206/268 (76.87%), Query Frame = 1
Query:    1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPM-DAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIP 801
            ++ R + LGWCVEWLQAFFLVADD+MD S TRRGQPCWYK   V+ IAINDSF+LE+ VF++LKRHF  E YY +LV+LFH+V ++TE+GQLLDLTSQPM + PH       H   L RFT  RY++IV+YKTA+YTFYLP A+GMI +G        LAR+ICC IGEFFQIQDDYLDCFGDP+V GKVGTDIQDNKCSWLVVQAL RA   QK++L  NY    ++K++++K+LY ++KL E+Y +YEE T+  + +LI  + D+P
Sbjct:  218 ELYRAAALGWCVEWLQAFFLVADDIMDDSETRRGQPCWYKKSDVKMIAINDSFLLESAVFRILKRHFGSEPYYAKLVDLFHEVIFQTELGQLLDLTSQPMTNDPHK------HVVDLTRFTINRYQLIVKYKTAFYTFYLPLALGMITSGHGTASKLSLARNICCIIGEFFQIQDDYLDCFGDPKVTGKVGTDIQDNKCSWLVVQALSRADDKQKSILQNNYGQWNDSKVKKIKDLYVDMKLPELYKEYEEKTYTDVMKLIGDINDMP 479          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN58_9STRA)

HSP 1 Score: 317 bits (811), Expect = 8.020e-106
Identity = 160/264 (60.61%), Postives = 201/264 (76.14%), Query Frame = 1
Query:   19 ILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            +LGW +E+LQAFFLVADDVMD S TRRGQPCWYK+PKVQ IAINDSF+LE++VF M+K+HF  + YYLQLVELF +V  +TE GQL+DLTSQPMD              L RFT  RY++ V+YKTA+YTFYLP A GMI +GV    ++ LA +ICC +GE+FQIQDDYLDCFGDP++IGKVGTDIQDNKCSWLVVQALER S AQ+  L  NY   ++ K+ ++K LY++L L  ++  YEED++K I+  +AKV+ +P  V
Sbjct:    1 VLGWAIEFLQAFFLVADDVMDDSQTRRGQPCWYKLPKVQNIAINDSFLLESYVFFMIKQHFGDQPYYLQLVELFINVVQKTEFGQLIDLTSQPMDTTVVD---------LTRFTMERYKLQVKYKTAFYTFYLPVACGMITSGVTSKEAFELASNICCIMGEYFQIQDDYLDCFGDPKIIGKVGTDIQDNKCSWLVVQALERVSAAQRKTLESNYGQWDDKKVAKIKGLYKDLGLPAIFETYEEDSYKLIQAELAKVKLMPKEV 255          
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8S8_9STRA)

HSP 1 Score: 318 bits (815), Expect = 1.440e-105
Identity = 165/267 (61.80%), Postives = 199/267 (74.53%), Query Frame = 1
Query:   10 RGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
            + SILGWC+EWLQAFFLVADD+MD S+TRRGQPCW++ PKVQ IAIND+F+LEA VF++LK+HF  +  YL LVELFHDV +RTE+GQLLDLTSQP+DA          PD L RFTP RY  IV  KTAYYTFYL  A  M+ +GV D GS+ LA+ IC RIGE+FQIQDDYLDC+GD  VIGKVGTDIQD+KCSWLVVQAL RA+ AQK +L  +Y   + A +  VK+LY +L L  VY  YE++ +  I   IA+V  +P  V
Sbjct:   58 KASILGWCIEWLQAFFLVADDIMDDSVTRRGQPCWFRDPKVQMIAINDAFLLEAFVFQILKKHFRSDACYLPLVELFHDVIFRTELGQLLDLTSQPLDA---------EPD-LARFTPERYHQIVVNKTAYYTFYLSAACAMLLSGVADEGSHALAKRICVRIGEYFQIQDDYLDCYGDAAVIGKVGTDIQDSKCSWLVVQALARATPAQKELLKAHYGKSDPAAVAAVKQLYADLDLAAVYHAYEDEAYAAISAEIAQVTQMPSDV 314          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Farnesyl7.690e-17794.07pyrophosphate synthase n=1 Tax=Ectocarpus siliculo... [more]
Uncharacterized6.860e-16887.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Farnesyl3.130e-12669.40pyrophosphate synthase n=1 Tax=Tribonema minus Tax... [more]
Farnesyl5.760e-12167.55pyrophosphate synthase n=1 Tax=Tribonema minus Tax... [more]
Hypothetical4.820e-10960.00protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Predicted5.600e-10961.11protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Uncharacterized9.360e-10962.55protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Hypothetical4.680e-10761.19protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical8.020e-10660.61protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Uncharacterized1.440e-10561.80protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11357contigEcto-sp9_F_contig11357:88..3970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score513.1
Seed ortholog evalue8.1e-143
Seed eggNOG ortholog2880.D8LGP5
Preferred nameFDPS
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.dimethylallyltranstransferase activity
EggNOG OGsCOG0142@1,KOG0711@2759
EC2.5.1.1,2.5.1.10,4.4.1.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons6
Model size810
Cds size810
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11357.1162.1prot_Ecto-sp9_F_contig11357.1162.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11357 88..3970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928382.1045594-CDS-Ecto-sp9_F_contig11357:87..2071622928382.1045594-CDS-Ecto-sp9_F_contig11357:87..207Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 88..207 +
1692277853.2259612-CDS-Ecto-sp9_F_contig11357:87..2071692277853.2259612-CDS-Ecto-sp9_F_contig11357:87..207Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 88..207 +
1622928382.1312945-CDS-Ecto-sp9_F_contig11357:514..5771622928382.1312945-CDS-Ecto-sp9_F_contig11357:514..577Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 515..577 +
1692277853.2388437-CDS-Ecto-sp9_F_contig11357:514..5771692277853.2388437-CDS-Ecto-sp9_F_contig11357:514..577Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 515..577 +
1622928382.1518862-CDS-Ecto-sp9_F_contig11357:1107..12321622928382.1518862-CDS-Ecto-sp9_F_contig11357:1107..1232Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 1108..1232 +
1692277853.2483253-CDS-Ecto-sp9_F_contig11357:1107..12321692277853.2483253-CDS-Ecto-sp9_F_contig11357:1107..1232Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 1108..1232 +
1622928382.1650627-CDS-Ecto-sp9_F_contig11357:1722..19781622928382.1650627-CDS-Ecto-sp9_F_contig11357:1722..1978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 1723..1978 +
1692277853.2614226-CDS-Ecto-sp9_F_contig11357:1722..19781692277853.2614226-CDS-Ecto-sp9_F_contig11357:1722..1978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 1723..1978 +
1622928382.1884584-CDS-Ecto-sp9_F_contig11357:3073..31931622928382.1884584-CDS-Ecto-sp9_F_contig11357:3073..3193Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 3074..3193 +
1692277853.2735567-CDS-Ecto-sp9_F_contig11357:3073..31931692277853.2735567-CDS-Ecto-sp9_F_contig11357:3073..3193Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 3074..3193 +
1622928382.208909-CDS-Ecto-sp9_F_contig11357:3844..39701622928382.208909-CDS-Ecto-sp9_F_contig11357:3844..3970Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 3845..3970 +
1692277853.281223-CDS-Ecto-sp9_F_contig11357:3844..39701692277853.281223-CDS-Ecto-sp9_F_contig11357:3844..3970Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11357 3845..3970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11357.1162.1

>prot_Ecto-sp9_F_contig11357.1162.1 ID=prot_Ecto-sp9_F_contig11357.1162.1|Name=mRNA_Ecto-sp9_F_contig11357.1162.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=270bp
QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAIN
DSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPM
DAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGV
KDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSW
LVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEE
DTHKQIKELIAKVEDIPHAV
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mRNA from alignment at Ecto-sp9_F_contig11357:88..3970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11357.1162.1 ID=mRNA_Ecto-sp9_F_contig11357.1162.1|Name=mRNA_Ecto-sp9_F_contig11357.1162.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3883bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11357:88..3970+ (Ectocarpus species9 EcSCA_722f female)
CAGGTCTGCCGCGGCAGCATTCTGGGATGGTGTGTGGAGTGGCTGCAGGC GTTTTTCCTGGTGGCCGACGATGTGATGGACAGGAGCCTCACCCGCCGCG GGCAACCCTGCTGGTACAAGGTGGGGAGACAGAAACAGAGACAAACACAT CCTGAGTTAAGGGTTACAAAACGTGTGAATGGAACGTGTCAGCATTTTTT TTTTTTCGATGGTGTGTGTCCGCAGCAGCTACATGTGAATTCCAACGACT CTTACGACTGACCTCTGGGTGCCCTCTGTTGCTCGTCCTCCCTCCCCCCC CCTCTCTTTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTGTGTGTCTC TCTCTCTCTTTCTCCCTCTCTCTCTCTCTCTCTCGCTCATTCTCTCTCTC TCTCTCATTCTCTCTCTCTCCGAGCAGGTGCCCAAGGTGCAGGAGATCGC CATCAACGACTCTTTCATCCTCGAGGCCCACGTGTTCAAGGTGAGTCAAC GCTACTGCTGTTGTTCAAGCGGCTACTATAGATACGAACCGCGAGAGGTG GGGACGGTTTTGTCGCCCCCACACCGCCAAGGTACGCCGCCACACCGAGC GAAAAATAAATTGGCCTCTTGTTAACGGTCTTGAAGTTTTCGGATTCGAG TGGGGGGCACGTACAACTGGCCTTGAGTTTCCGCCCATTCTTTCCGACCA TATGCGTGTCTGAGGTCCACGGGGCGGCATGCCTTGTCAGGGCGGGGGCG TGGGTACTTGCCCCTCTTCGGTTGCATTCGGCGGCACCCCCAGTGGAGTG TGGACACGTCCGTCGCCGTGTGAACGAGGGATTTTGGGTGTAATCGTGTC GTCCCTGCTCTCGTGTTTTTTTTTCTGCGCACGTTTATTTTTTATTGTTC TGTGTGCCGACGCGTTGCTACCCGCGCAACATTCCATCACCCCGCACTTG TCTTCCTACACTTTTGCCACATTGTCCGCCTTTGTGTGTGTGTGTTTTTG CTATTCTGCGTGTCCCGCAGATGTTGAAGCGGCACTTCGCTCACGAGAAC TACTACCTCCAGCTGGTGGAGCTGTTCCACGACGTGACCTACCGGACCGA GATGGGGCAGCTTCTGGACCTCACGTCCCAGCCGATGGACGCCCCGTCCG ATCTCACCAGGCAAGAGACAGAGACACACACAGAGAGAGAGAGAGGGACA CAGACAGACACACACACACACACAAGTGGCAGATAGAGACAGAGACGGGA GGCACACAGAGAGAAAGGGATAGAGACAGACAGGGACAGAGGACATAGAG AGACAGACAGAGACCGACAGACAAAACGAGAGTCAGACATACAAATGAGA TTCGGTAGAAAAGAGACGCAGGGTGCTGTGGCGCGAGGGAGGGCGAGATA TTTTCTATCTCGATGGCATGAGAATCCTTGGGGGGTGAAATATAGGCGAT CCCGTAGATACTGTAGACTATCCCACATTTTTGCTGGATATTCCAGACTG GATTTTGGATCTTGCGGTATTCTTTGGGCGTACCGGCAGTGGTTGCCCTG GAGATGTCTTTCACAATCCCACGAAACGCAGAATGCCACCCCTCCCCCCC CCTTCCCCCTCGAAGACGCTGGTCTAGCAGCTCAGGCATGCGAAACATGA TTGCGCCCCCCATCCCGACCCCCTCTGCAGGTTTACTCCCGTGCGCTACC GCATGATCGTCCGGTATAAGACGGCGTACTACACCTTCTACCTGCCGTGC GCGATCGGCATGATCTACGCCGGCGTGAAGGACCCCGGCAGCTACCGGCT CGCCCGCGACATCTGCTGCCGGATAGGAGAGTTCTTCCAGATCCAGGACG ACTACCTCGACTGCTTCGGCGACCCCGAGGTCATCGGAAAGGTGTGTGTC GTGCTTGGGATCATCTCCGTAAGGACGGCCCTCGCAGGAAGCGTTTCTAG ATGTGCCCGCGGTGTTGCGGGGTGCTTGTTGCAAAAGGACCGACTCTGAG ACGCACGCACGTCTGGACAGCACGAGCGGTGTTGTTGACCGTACCCTGAC AATATTTCTACGTACAACGGCTCTTGTAGGCGCAGATTGAAGCGTGTTTC TAGATGCCCGCGTTGTTGCGGCGAGGTTTTTTGCATAGGACCGAGTTTTA GGGACGCACGCACACCCACATTCGCTACAGCACCTTCCCTCGAAGCGGTG TTGCCAGCAGTGGTAGTGCCCTGACAGCGGCGCGACAGCGGCAGCTCCGT TGTTGTTGTTTTGTTAAATGTGTAGAGGCTTGACGATGAGTTGGGGGTGT GCTGCCGTTGTTCAAGCGACCCCCCTCTCGACTCTTTTGGCGCCCTCCCC GACTGCTTTTTGGCGCCCTCCCGGAGGTATTCGGTAAGGTTCGCGAAACT ACTTCCCCACGTTCGAAAGGAACACTGCCCCGAGACCCGTTCCGTGAACC AAGCCGCATAAACAGCACGCGCTGGTCTCGTTGCTCTCATGGAACGGTCA CAGCGGAGAGGTTGGCGGTAGTTGTTGAATACGTTGAGATGAAACCGTCG ATTTGTTAGGCCGCCACCGCTGTAGGGGATCGGACGAGGTGTTTTACCTA CTGTACCGTCTCGGGGCTTGAACGGACGAAAATACACAACAGCAAGCGAG ACAATGTTGCAGCAGCGGCAACATGCGGTTGCATGCACCAACGTTACGGT GGCGTTTGGTGTGGTCCGATGCGAATCGACCGGGCTGTCGTTTTTCCTGT GCCGTGGGCGTCTTCGTCCTTTTACTTTTCCTCCTCCCCCCTCCTCCTCC CGGCGATTCGCTTCGGCTTGGTTCTCGGTTTTGCTATTTTTCATCGTAGC CAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAGAATGACCACAA CACGTCTCTCTTTTCTTTCTTTGCTGCGTGCTGGACTGTACGTCGCTGTT CGGAACGCGCAAACCACGCTTTCGCCGACCAACAAGGTGGGCACCGACAT CCAAGACAACAAGTGCAGCTGGCTGGTGGTGCAGGCGCTGGAGAGGGCCT CCAAGGCGCAGAAGGCCGTCCTCATCCAGAACTACGCAATCGACGAGGAG GCTAAGGTGCAGCAGGGGGGGGGGGACCGATGGTATTGGCGTGTAAGACA TGCTTCATTATTGAAACATGCAGCAGTTCTGCTTGTAGTCTACTGTAGTC CGCTGTCGGTTGTGTTGCTGTCGATGCGGCGTTGTACGGTCAGCTTGTTG GTGACGTTGCTGTTTTTCGTGTGTCGATCCAACCAAGCGGTTTGTCGCGT TGCTGTTTTTCGTGTGTCAGCCCAACCAAGCGGTTGTCGCGAAGAGCTTG CCGTTTCAATGGGACATGCAATTGACTGTTGCCACAAGTCATGTTCGAGT AGAACGCGAGGGTGGCTGTGCCGAAAGCTTTGGGGGAGCAAGGTATATCT TTGCGACTCCTCCAACCCTTGATGATTTCCTTTACCATGCACACACACGG CATGAGCTTCTCTCTGCGGAACCACATCGGCGTTCTTGGCGACCTCTTCG AACCAAGGCAACAATGTTGTCAAATGACGGTGTTTCGTGGGTTGGCATCG ACCTCACAAAATCGACCAAACACGGCAAAATTCGCTACAGTAGAAAAAGC AGCACACAAGAATCGCAAGGACGGCCTCTGTGCTACTGCTGTATCTTTTG AGTGTGAGTGTTAATTTTGTGTTTTGTGTTTGCATTTTTTTTGCTCTTCT TGTCAAGATTGAGCGCGTCAAGGAGCTGTACCGCGAGCTGAAGCTGGAGG AAGTGTACGCCAAGTACGAGGAGGACACTCACAAGCAGATCAAGGAGCTC ATCGCGAAGGTCGAGGACATCCCCCACGCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11357:88..3970+

>mRNA_Ecto-sp9_F_contig11357.1162.1 ID=mRNA_Ecto-sp9_F_contig11357.1162.1|Name=mRNA_Ecto-sp9_F_contig11357.1162.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11357:88..3970+ (Ectocarpus species9 EcSCA_722f female)
CAGGTCTGCCGCGGCAGCATTCTGGGATGGTGTGTGGAGTGGCTGCAGGC
GTTTTTCCTGGTGGCCGACGATGTGATGGACAGGAGCCTCACCCGCCGCG
GGCAACCCTGCTGGTACAAGCAGGTCTGCCGCGGCAGCATTCTGGGATGG
TGTGTGGAGTGGCTGCAGGCGTTTTTCCTGGTGGCCGACGATGTGATGGA
CAGGAGCCTCACCCGCCGCGGGCAACCCTGCTGGTACAAGGTGCCCAAGG
TGCAGGAGATCGCCATCAACGACTCTTTCATCCTCGAGGCCCACGTGTTC
AAGGTGCCCAAGGTGCAGGAGATCGCCATCAACGACTCTTTCATCCTCGA
GGCCCACGTGTTCAAGATGTTGAAGCGGCACTTCGCTCACGAGAACTACT
ACCTCCAGCTGGTGGAGCTGTTCCACGACGTGACCTACCGGACCGAGATG
GGGCAGCTTCTGGACCTCACGTCCCAGCCGATGGACGCCCCATGTTGAAG
CGGCACTTCGCTCACGAGAACTACTACCTCCAGCTGGTGGAGCTGTTCCA
CGACGTGACCTACCGGACCGAGATGGGGCAGCTTCTGGACCTCACGTCCC
AGCCGATGGACGCCCCGCATGCGAAACATGATTGCGCCCCCCATCCCGAC
CCCCTCTGCAGGTTTACTCCCGTGCGCTACCGCATGATCGTCCGGTATAA
GACGGCGTACTACACCTTCTACCTGCCGTGCGCGATCGGCATGATCTACG
CCGGCGTGAAGGACCCCGGCAGCTACCGGCTCGCCCGCGACATCTGCTGC
CGGATAGGAGAGTTCTTCCAGATCCAGGACGACTACCTCGACTGCTTCGG
CGACCCCGAGGTCATCGGAAAGGCATGCGAAACATGATTGCGCCCCCCAT
CCCGACCCCCTCTGCAGGTTTACTCCCGTGCGCTACCGCATGATCGTCCG
GTATAAGACGGCGTACTACACCTTCTACCTGCCGTGCGCGATCGGCATGA
TCTACGCCGGCGTGAAGGACCCCGGCAGCTACCGGCTCGCCCGCGACATC
TGCTGCCGGATAGGAGAGTTCTTCCAGATCCAGGACGACTACCTCGACTG
CTTCGGCGACCCCGAGGTCATCGGAAAGGTGGGCACCGACATCCAAGACA
ACAAGTGCAGCTGGCTGGTGGTGCAGGCGCTGGAGAGGGCCTCCAAGGCG
CAGAAGGCCGTCCTCATCCAGAACTACGCAATCGACGAGGAGGCTAAGGT
GGGCACCGACATCCAAGACAACAAGTGCAGCTGGCTGGTGGTGCAGGCGC
TGGAGAGGGCCTCCAAGGCGCAGAAGGCCGTCCTCATCCAGAACTACGCA
ATCGACGAGGAGGCTAAGATTGAGCGCGTCAAGGAGCTGTACCGCGAGCT
GAAGCTGGAGGAAGTGTACGCCAAGTACGAGGAGGACACTCACAAGCAGA
TCAAGGAGCTCATCGCGAAGGTCGAGGACATCCCCCACGCGGTGATTGAG
CGCGTCAAGGAGCTGTACCGCGAGCTGAAGCTGGAGGAAGTGTACGCCAA
GTACGAGGAGGACACTCACAAGCAGATCAAGGAGCTCATCGCGAAGGTCG
AGGACATCCCCCACGCGGTG
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