mRNA_Ecto-sp9_F_contig11357.1162.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Farnesyl (pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI) HSP 1 Score: 505 bits (1301), Expect = 7.690e-177 Identity = 254/270 (94.07%), Postives = 256/270 (94.81%), Query Frame = 1
Query: 1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
+VCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP L RFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDP SYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLE+VYAKYEEDTHKQIKELIAKVEDIPHAV
Sbjct: 227 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP----------SDLTRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEKVYAKYEEDTHKQIKELIAKVEDIPHAV 486
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE) HSP 1 Score: 483 bits (1244), Expect = 6.860e-168 Identity = 248/283 (87.63%), Postives = 252/283 (89.05%), Query Frame = 1
Query: 1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQ-------------EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
+VCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKV + + EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDP SYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERAS+AQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV
Sbjct: 237 EVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVGRQKQRQTHPEFRVTQSEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP---------------FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASRAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 504
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Farnesyl (pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF9_9STRA) HSP 1 Score: 375 bits (963), Expect = 3.130e-126 Identity = 186/268 (69.40%), Postives = 218/268 (81.34%), Query Frame = 1
Query: 7 CRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
CR ++LGWC+EWLQAFFLVADDVMD S TRRGQPCW++VP V++IAIND+FILE+ VFK+L RHF+ E+YYLQL+ELFHDVTYRTEMGQLLDLTSQP+D P PD RFT RY MIV+YKTA+YTFYLPCAIGMIYAGV DP S+ LAR ICC IGE+FQIQDDYLDC+GDP+ IGKVGTDIQD KCSWLVVQALER S AQK LI NY D+ KI +VK +Y +LKL +VY YEE ++K+I+ LI +V+D+P V
Sbjct: 182 CRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWFRVPHVKQIAINDAFILESLVFKVLNRHFSQESYYLQLMELFHDVTYRTEMGQLLDLTSQPLDKP---------PD-FTRFTKTRYAMIVKYKTAFYTFYLPCAIGMIYAGVSDPSSFALARRICCTIGEYFQIQDDYLDCYGDPKFIGKVGTDIQDMKCSWLVVQALERCSAAQKDELIANYGKDDAEKIGKVKAIYNDLKLADVYHAYEEQSYKEIQGLIEEVKDVPKDV 439
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Farnesyl (pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G4_9STRA) HSP 1 Score: 363 bits (933), Expect = 5.760e-121 Identity = 179/265 (67.55%), Postives = 212/265 (80.00%), Query Frame = 1
Query: 7 CRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIP 801
CR ++LGWC+EWLQAFFLVADDVMD S TRRGQPCWY+VP V++IAIND+FILE+ V+++L+RHF+ E+YYLQLVELFHDVTYRTEMGQLLDLTSQP+D P PD RFT RY MIV+YKTA+YTFYLPCAIGMIYA V DP S+ LAR ICC IGE+FQIQDDYLDC+GDP VIGKVGTDIQD KCSWLVVQALE+ + Q+ L+ NY ++ KI +VK LY L L Y YEE +H +I+ LIA+V+D+P
Sbjct: 235 CRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWYRVPHVKQIAINDAFILESLVYRVLRRHFSQESYYLQLVELFHDVTYRTEMGQLLDLTSQPLDKP---------PD-FARFTATRYAMIVKYKTAFYTFYLPCAIGMIYASVSDPSSFALARRICCIIGEYFQIQDDYLDCYGDPAVIGKVGTDIQDMKCSWLVVQALEKCTPEQRQQLMDNYGKNDPKKIAKVKALYTALGLPAAYRNYEEQSHGEIQTLIAEVKDVP 489
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXN8_HETAK) HSP 1 Score: 332 bits (851), Expect = 4.820e-109 Identity = 162/270 (60.00%), Postives = 205/270 (75.93%), Query Frame = 1
Query: 1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
++ R +LGWC+EWLQAFFLVADD+MD SLTRRGQPCWY+ P+V+ IAINDSFILE+ VF++LK+HF HE Y Q++++FH+V Y+TE+GQLLDLTSQP+D P L RFT R+R+IV+YKTAYYTFYL A+GMI +GV +P Y A+ ICC IGE+FQIQDDYLDC+GDP VIGKVGTDIQDNKCSWLVVQAL +A A + +L +NY D AKI++VK LY +L L + YEE ++K+I L+ VE +P +
Sbjct: 210 ELARACVLGWCIEWLQAFFLVADDIMDDSLTRRGQPCWYRKPEVKMIAINDSFILESGVFRLLKKHFGHEETYSQILDVFHEVIYQTELGQLLDLTSQPLDGP----------TDLDRFTVERHRLIVKYKTAYYTFYLSTAMGMIDSGVTEPALYETAKRICCMIGEYFQIQDDYLDCYGDPAVIGKVGTDIQDNKCSWLVVQALAQAQPADRKLLKENYGKDSAAKIKKVKALYEQLGLAAQFHAYEEASYKEINRLLDSVEGLPREI 469
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA81_PHATC) HSP 1 Score: 327 bits (839), Expect = 5.600e-109 Identity = 165/270 (61.11%), Postives = 205/270 (75.93%), Query Frame = 1
Query: 1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
+ R ++LGW +E+LQAFFLVADDVMD S TRRGQPCWYK+P VQ +AINDSF+LE+ VF +L+RHF HE +YL L+EL DVT++TE+GQLLDLTSQP +H PH L RFT RY+ IV+YKTA+Y+FYLP A+GMI +GV D + AR ICC +GE+FQIQDDYLDCFGDP VIGKVGTDIQDNKCSWLVVQAL R + AQ+ VL +Y ++ K+E VK LYREL+L EV+ YEED++ QI+ + +V +P V
Sbjct: 66 ETARAAVLGWAIEFLQAFFLVADDVMDDSQTRRGQPCWYKLPDVQLVAINDSFLLESFVFAILRRHFGHEPFYLHLLELMLDVTHKTELGQLLDLTSQP-----PQHHDQPHHVDLDRFTLTRYQQIVKYKTAFYSFYLPVAMGMILSGVTDAPALAQARTICCLMGEYFQIQDDYLDCFGDPAVIGKVGTDIQDNKCSWLVVQALARCTPAQRDVLQNHYGQSDDQKVETVKSLYRELQLVEVFHAYEEDSYAQIQAQLEQVHAVPKQV 330
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV8_GLOUD) HSP 1 Score: 327 bits (838), Expect = 9.360e-109 Identity = 167/267 (62.55%), Postives = 203/267 (76.03%), Query Frame = 1
Query: 10 RGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
+ SILGWC+EWLQAFFLVADD+MD S+ RRGQPCWY+ PKVQ IAIND+F+LE VF++LK+HF E++YL LVELFHDV YRTE+GQLLDLTSQP D PD L RFT RYR +V +KTAYYTFYL A M+ GV D S+ LA+ IC RIGE+FQIQDD+LDC+GD +VIGK+GTDIQDNKCSWLVVQAL+RAS AQK L +Y D+ A I +VK++Y +L L VY YE+ T+K+I + IA+V+ IP V
Sbjct: 79 KASILGWCIEWLQAFFLVADDIMDASVLRRGQPCWYRNPKVQMIAINDAFLLETFVFQILKKHFRSESFYLPLVELFHDVIYRTELGQLLDLTSQPQDR---------EPD-LARFTLERYRKVVVFKTAYYTFYLSVACAMLLRGVVDEPSHELAKKICVRIGEYFQIQDDFLDCYGDAQVIGKIGTDIQDNKCSWLVVQALQRASGAQKETLKAHYGKDDPAAIAKVKQVYADLGLAAVYHAYEDATYKEITDEIARVDKIPSEV 335
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU78_9STRA) HSP 1 Score: 328 bits (840), Expect = 4.680e-107 Identity = 164/268 (61.19%), Postives = 206/268 (76.87%), Query Frame = 1
Query: 1 QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPM-DAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIP 801
++ R + LGWCVEWLQAFFLVADD+MD S TRRGQPCWYK V+ IAINDSF+LE+ VF++LKRHF E YY +LV+LFH+V ++TE+GQLLDLTSQPM + PH H L RFT RY++IV+YKTA+YTFYLP A+GMI +G LAR+ICC IGEFFQIQDDYLDCFGDP+V GKVGTDIQDNKCSWLVVQAL RA QK++L NY ++K++++K+LY ++KL E+Y +YEE T+ + +LI + D+P
Sbjct: 218 ELYRAAALGWCVEWLQAFFLVADDIMDDSETRRGQPCWYKKSDVKMIAINDSFLLESAVFRILKRHFGSEPYYAKLVDLFHEVIFQTELGQLLDLTSQPMTNDPHK------HVVDLTRFTINRYQLIVKYKTAFYTFYLPLALGMITSGHGTASKLSLARNICCIIGEFFQIQDDYLDCFGDPKVTGKVGTDIQDNKCSWLVVQALSRADDKQKSILQNNYGQWNDSKVKKIKDLYVDMKLPELYKEYEEKTYTDVMKLIGDINDMP 479
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN58_9STRA) HSP 1 Score: 317 bits (811), Expect = 8.020e-106 Identity = 160/264 (60.61%), Postives = 201/264 (76.14%), Query Frame = 1
Query: 19 ILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
+LGW +E+LQAFFLVADDVMD S TRRGQPCWYK+PKVQ IAINDSF+LE++VF M+K+HF + YYLQLVELF +V +TE GQL+DLTSQPMD L RFT RY++ V+YKTA+YTFYLP A GMI +GV ++ LA +ICC +GE+FQIQDDYLDCFGDP++IGKVGTDIQDNKCSWLVVQALER S AQ+ L NY ++ K+ ++K LY++L L ++ YEED++K I+ +AKV+ +P V
Sbjct: 1 VLGWAIEFLQAFFLVADDVMDDSQTRRGQPCWYKLPKVQNIAINDSFLLESYVFFMIKQHFGDQPYYLQLVELFINVVQKTEFGQLIDLTSQPMDTTVVD---------LTRFTMERYKLQVKYKTAFYTFYLPVACGMITSGVTSKEAFELASNICCIMGEYFQIQDDYLDCFGDPKIIGKVGTDIQDNKCSWLVVQALERVSAAQRKTLESNYGQWDDKKVAKIKGLYKDLGLPAIFETYEEDSYKLIQAELAKVKLMPKEV 255
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8S8_9STRA) HSP 1 Score: 318 bits (815), Expect = 1.440e-105 Identity = 165/267 (61.80%), Postives = 199/267 (74.53%), Query Frame = 1
Query: 10 RGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPDPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPGSYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEEVYAKYEEDTHKQIKELIAKVEDIPHAV 810
+ SILGWC+EWLQAFFLVADD+MD S+TRRGQPCW++ PKVQ IAIND+F+LEA VF++LK+HF + YL LVELFHDV +RTE+GQLLDLTSQP+DA PD L RFTP RY IV KTAYYTFYL A M+ +GV D GS+ LA+ IC RIGE+FQIQDDYLDC+GD VIGKVGTDIQD+KCSWLVVQAL RA+ AQK +L +Y + A + VK+LY +L L VY YE++ + I IA+V +P V
Sbjct: 58 KASILGWCIEWLQAFFLVADDIMDDSVTRRGQPCWFRDPKVQMIAINDAFLLEAFVFQILKKHFRSDACYLPLVELFHDVIFRTELGQLLDLTSQPLDA---------EPD-LARFTPERYHQIVVNKTAYYTFYLSAACAMLLSGVADEGSHALAKRICVRIGEYFQIQDDYLDCYGDAAVIGKVGTDIQDSKCSWLVVQALARATPAQKELLKAHYGKSDPAAVAAVKQLYADLDLAAVYHAYEDEAYAAISAEIAQVTQMPSDV 314 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11357.1162.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11357.1162.1 >prot_Ecto-sp9_F_contig11357.1162.1 ID=prot_Ecto-sp9_F_contig11357.1162.1|Name=mRNA_Ecto-sp9_F_contig11357.1162.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=270bp QVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINback to top mRNA from alignment at Ecto-sp9_F_contig11357:88..3970+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11357.1162.1 ID=mRNA_Ecto-sp9_F_contig11357.1162.1|Name=mRNA_Ecto-sp9_F_contig11357.1162.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3883bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11357:88..3970+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11357:88..3970+ >mRNA_Ecto-sp9_F_contig11357.1162.1 ID=mRNA_Ecto-sp9_F_contig11357.1162.1|Name=mRNA_Ecto-sp9_F_contig11357.1162.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11357:88..3970+ (Ectocarpus species9 EcSCA_722f female)back to top |