mRNA_Ecto-sp9_F_contig11356.1161.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11356.1161.1
Unique NamemRNA_Ecto-sp9_F_contig11356.1161.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11356.1161.1 vs.
Match: Sterol (or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 1.050e-119
Identity = 193/213 (90.61%), Postives = 197/213 (92.49%), Query Frame = 3 
Query:    3 WRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISETAAVSAASGEDKGDRHGTGLPAKPAVLPSSLAAPGSQPGATPTAADVSCRSTVAETSDGALEDHAKKSYVVVDQARDLGEQHAGTSKNGSDSCSTGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLVFDFLMWQWWRSTLLYEP 641
            WRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISE+AAVS ASGED GDRHGTG PA+ AVLPSS AA  SQPGAT TAADVSC STV ETSDG LEDH++KSYVVVDQARDLGEQHA TSKNGSDSC TGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGL  DFLMWQWWR TLLYEP
Sbjct:  573 WRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDSGDRHGTGPPAEQAVLPSSSAATRSQPGATATAADVSCGSTVVETSDGTLEDHSEKSYVVVDQARDLGEQHAITSKNGSDSCGTGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRHTLLYEP 785
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BLAST of mRNA_Ecto-sp9_F_contig11356.1161.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 5.850e-114
Identity = 185/214 (86.45%), Postives = 194/214 (90.65%), Query Frame = 3 
Query:    3 WRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISETAAVSAASGEDKGDRHGTGLPAKPAVLPSSLAAPGSQPGATPTAADVSCRSTVAETSDGALEDHAKKSYVVVDQARDLGEQHAGTSKNGSDS-CSTGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLVFDFLMWQWWRSTLLYEP 641
            WRRL+ALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISE+AAVSAASGED+G RHGTG PA+PA+ PSS AA GSQP AT TA D+SC S VAETSDG LEDH++ SYVVV+QARDLGEQHAGTSKNG DS C TGGGGGVDGAGRVS TKKAG EWRGWGAVAFFEGASLVMGL FDFLMWQWWR TL YEP
Sbjct:  580 WRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSAASGEDRGGRHGTGPPAEPALWPSSSAATGSQPCATTTATDISCGSRVAETSDGTLEDHSENSYVVVEQARDLGEQHAGTSKNGGDSSCGTGGGGGVDGAGRVSKTKKAGSEWRGWGAVAFFEGASLVMGLAFDFLMWQWWRHTLSYEP 793
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BLAST of mRNA_Ecto-sp9_F_contig11356.1161.1 vs.
Match: Diacylglycerol (O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.040e-7
Identity = 66/220 (30.00%), Postives = 92/220 (41.82%), Query Frame = 3 
Query:   12 LLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISETA----------AVSAASGEDKGDRHGTGLPAKPAVLPSSLAAPGSQPGATPTAADVSCRSTVAETSDGALEDHAKKSYVVVDQARDLGEQHAGTSKNGSDSCSTGGGGGVDGAGRVSNTK-KAGREWRGWGAVAFFEGASLVMGLVFDFLMWQWWRSTLLYE 638
            L ++  +FL S +VHEAV FVAMRRT WP STF L ++  +   WD ++PV +  S             +++AA G+  G    T   A  A +P +                          +DG    H  K     D A   G     T + GS+             GR    + K GR  RGW AV  + G  + + LV D+ +WQWWR T + E
Sbjct:  539 LASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVVADTSTPGTRPTGRRAFTSIAAAGGDGVGFSAETEA-ANSAAVPRTAXXXXXXXXXXXXXXXXXXXXXXXXAADGQHAGHPSK-----DVANKNGVV---TGQQGSE---------APRLGRKEPLRPKIGRR-RGWAAVVVYGGMYMPLTLVVDYCVWQWWRHTHMAE 739
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11356.1161.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Sterol1.050e-11990.61or diacylglycerol O-acyltransferase n=1 Tax=Ectoca... [more]
Uncharacterized5.850e-11486.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Diacylglycerol1.040e-730.00O-acyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11356contigEcto-sp9_F_contig11356:431..1322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionsterol or diacylglycerol O-acyltransferase
Ec32 orthologEc-02_003110.1
Exons1
Model size892
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11356.1161.1prot_Ecto-sp9_F_contig11356.1161.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11356 508..1074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928382.0333471-UTR-Ecto-sp9_F_contig11356:430..5071622928382.0333471-UTR-Ecto-sp9_F_contig11356:430..507Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11356 431..507 +
1692277853.1951487-UTR-Ecto-sp9_F_contig11356:430..5071692277853.1951487-UTR-Ecto-sp9_F_contig11356:430..507Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11356 431..507 +
1622928382.0599294-UTR-Ecto-sp9_F_contig11356:1074..13221622928382.0599294-UTR-Ecto-sp9_F_contig11356:1074..1322Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11356 1075..1322 +
1692277853.2150774-UTR-Ecto-sp9_F_contig11356:1074..13221692277853.2150774-UTR-Ecto-sp9_F_contig11356:1074..1322Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11356 1075..1322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928382.0469823-CDS-Ecto-sp9_F_contig11356:507..10741622928382.0469823-CDS-Ecto-sp9_F_contig11356:507..1074Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11356 508..1074 +
1692277853.205308-CDS-Ecto-sp9_F_contig11356:507..10741692277853.205308-CDS-Ecto-sp9_F_contig11356:507..1074Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11356 508..1074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11356.1161.1

>prot_Ecto-sp9_F_contig11356.1161.1 ID=prot_Ecto-sp9_F_contig11356.1161.1|Name=mRNA_Ecto-sp9_F_contig11356.1161.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=189bp
MRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISETAAVSAASGEDKGDR
HGTGLPAKPAVLPSSLAAPGSQPGATPTAADVSCRSTVAETSDGALEDHA
KKSYVVVDQARDLGEQHAGTSKNGSDSCSTGGGGGVDGAGRVSNTKKAGR
EWRGWGAVAFFEGASLVMGLVFDFLMWQWWRSTLLYEP*
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mRNA from alignment at Ecto-sp9_F_contig11356:431..1322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11356.1161.1 ID=mRNA_Ecto-sp9_F_contig11356.1161.1|Name=mRNA_Ecto-sp9_F_contig11356.1161.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=892bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11356:431..1322+ (Ectocarpus species9 EcSCA_722f female)
CATGGCGGAGGCTCCTGGCGTTGACCTCCGCCTTCTTGTTCTCGAGCCTT
GTCCACGAGGCGGTCACCTTCGTCGCGATGCGCCGGACGTGCTGGCCGGT
GAGTACGTTCTCCCTGGTCCTCTCCATCTTCGTCATCTCCGGGTGGGACG
CCATGTACCCCGTCAGGAGCATCATCTCCGAAACCGCGGCGGTTTCCGCG
GCCTCCGGCGAAGACAAGGGCGATCGTCACGGGACTGGTCTTCCCGCTAA
GCCGGCAGTTTTGCCGTCGAGTTTAGCAGCTCCAGGATCGCAGCCGGGCG
CAACGCCCACTGCGGCGGACGTCTCCTGTAGATCTACAGTGGCGGAAACG
TCAGACGGAGCCTTGGAAGATCATGCCAAGAAATCATATGTTGTGGTTGA
CCAAGCGCGGGATCTGGGAGAGCAGCATGCCGGCACCTCCAAGAATGGTA
GCGATAGTTGCAGCACTGGTGGTGGCGGGGGTGTTGATGGTGCCGGGAGG
GTTTCCAACACGAAAAAGGCTGGCAGAGAGTGGCGGGGTTGGGGTGCGGT
GGCGTTTTTCGAGGGCGCGTCGCTTGTGATGGGGCTTGTCTTTGATTTCC
TTATGTGGCAATGGTGGCGATCCACGCTGTTGTACGAGCCCTGATCCATG
TGACGACGGGGTCCTTTTGCGTTGATGTGGTGGGGACACGTGCTGTTTCG
TGTCTCTTGGGGAGAATCACGCTGAACTGCTGCCGAGCAATGTGTTGCTG
CGACTTTTTTTGCTTGTCTTGTTGTGTGCCGAATAGTATCCACCTAGAAT
GTGCGCGCTCTTGCAGGGATGTTAGATGCGTGTAGCTCTGTGGATAATCT
CATCTCTGTTCCATTTTCCGCCAGATATTTACCTAATCCTAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11356:431..1322+

>mRNA_Ecto-sp9_F_contig11356.1161.1 ID=mRNA_Ecto-sp9_F_contig11356.1161.1|Name=mRNA_Ecto-sp9_F_contig11356.1161.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11356:431..1322+ (Ectocarpus species9 EcSCA_722f female)
ATGCGCCGGACGTGCTGGCCGGTGAGTACGTTCTCCCTGGTCCTCTCCAT
CTTCGTCATCTCCGGGTGGGACGCCATGTACCCCGTCAGGAGCATCATCT
CCGAAACCGCGGCGGTTTCCGCGGCCTCCGGCGAAGACAAGGGCGATCGT
CACGGGACTGGTCTTCCCGCTAAGCCGGCAGTTTTGCCGTCGAGTTTAGC
AGCTCCAGGATCGCAGCCGGGCGCAACGCCCACTGCGGCGGACGTCTCCT
GTAGATCTACAGTGGCGGAAACGTCAGACGGAGCCTTGGAAGATCATGCC
AAGAAATCATATGTTGTGGTTGACCAAGCGCGGGATCTGGGAGAGCAGCA
TGCCGGCACCTCCAAGAATGGTAGCGATAGTTGCAGCACTGGTGGTGGCG
GGGGTGTTGATGGTGCCGGGAGGGTTTCCAACACGAAAAAGGCTGGCAGA
GAGTGGCGGGGTTGGGGTGCGGTGGCGTTTTTCGAGGGCGCGTCGCTTGT
GATGGGGCTTGTCTTTGATTTCCTTATGTGGCAATGGTGGCGATCCACGC
TGTTGTACGAGCCCTGAATGCGCCGGACGTGCTGGCCGGTGAGTACGTTC
TCCCTGGTCCTCTCCATCTTCGTCATCTCCGGGTGGGACGCCATGTACCC
CGTCAGGAGCATCATCTCCGAAACCGCGGCGGTTTCCGCGGCCTCCGGCG
AAGACAAGGGCGATCGTCACGGGACTGGTCTTCCCGCTAAGCCGGCAGTT
TTGCCGTCGAGTTTAGCAGCTCCAGGATCGCAGCCGGGCGCAACGCCCAC
TGCGGCGGACGTCTCCTGTAGATCTACAGTGGCGGAAACGTCAGACGGAG
CCTTGGAAGATCATGCCAAGAAATCATATGTTGTGGTTGACCAAGCGCGG
GATCTGGGAGAGCAGCATGCCGGCACCTCCAAGAATGGTAGCGATAGTTG
CAGCACTGGTGGTGGCGGGGGTGTTGATGGTGCCGGGAGGGTTTCCAACA
CGAAAAAGGCTGGCAGAGAGTGGCGGGGTTGGGGTGCGGTGGCGTTTTTC
GAGGGCGCGTCGCTTGTGATGGGGCTTGTCTTTGATTTCCTTATGTGGCA
ATGGTGGCGATCCACGCTGTTGTACGAGCCCTGA
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