mRNA_Ecto-sp9_F_contig11354.1160.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11354.1160.1
Unique NamemRNA_Ecto-sp9_F_contig11354.1160.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11354.1160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ01_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.680e-45
Identity = 84/96 (87.50%), Postives = 86/96 (89.58%), Query Frame = 2 
Query:  197 MLTYFRTLLVVEVLLARLSANSSAAAAAAVLRPGDIVSMSHRSKVTGGVEEKREAPWEEALRSQMPRFGRPDTVQFKPILPDGSMSHSPDRDQVAV 484
            M TYFR LLVVE+LLA LSA S AAAAAAVLRPGDIVSMS+RSKVTG VEEKREAPWEEALRSQMPRFGRPDTVQFKP LPDG  SHS DRDQVAV
Sbjct:    1 MFTYFRALLVVELLLAHLSATSIAAAAAAVLRPGDIVSMSYRSKVTGSVEEKREAPWEEALRSQMPRFGRPDTVQFKPNLPDGGTSHSADRDQVAV 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11354.1160.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.680e-4587.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11354contigEcto-sp9_F_contig11354:2584..3768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_011400.1
Exons2
Model size487
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11354.1160.1prot_Ecto-sp9_F_contig11354.1160.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11354 2780..3768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928381.9444442-UTR-Ecto-sp9_F_contig11354:2583..27791622928381.9444442-UTR-Ecto-sp9_F_contig11354:2583..2779Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11354 2584..2779 +
1692277853.1651099-UTR-Ecto-sp9_F_contig11354:2583..27791692277853.1651099-UTR-Ecto-sp9_F_contig11354:2583..2779Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11354 2584..2779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928381.9615192-CDS-Ecto-sp9_F_contig11354:2779..29321622928381.9615192-CDS-Ecto-sp9_F_contig11354:2779..2932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11354 2780..2932 +
1692277853.1778958-CDS-Ecto-sp9_F_contig11354:2779..29321692277853.1778958-CDS-Ecto-sp9_F_contig11354:2779..2932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11354 2780..2932 +
1622928381.975862-CDS-Ecto-sp9_F_contig11354:3630..37681622928381.975862-CDS-Ecto-sp9_F_contig11354:3630..3768Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11354 3631..3768 +
1692277853.1856039-CDS-Ecto-sp9_F_contig11354:3630..37681692277853.1856039-CDS-Ecto-sp9_F_contig11354:3630..3768Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11354 3631..3768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11354.1160.1

>prot_Ecto-sp9_F_contig11354.1160.1 ID=prot_Ecto-sp9_F_contig11354.1160.1|Name=mRNA_Ecto-sp9_F_contig11354.1160.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=97bp
MLTYFRTLLVVEVLLARLSANSSAAAAAAVLRPGDIVSMSHRSKVTGGVE
EKREAPWEEALRSQMPRFGRPDTVQFKPILPDGSMSHSPDRDQVAV*
back to top

mRNA from alignment at Ecto-sp9_F_contig11354:2584..3768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11354.1160.1 ID=mRNA_Ecto-sp9_F_contig11354.1160.1|Name=mRNA_Ecto-sp9_F_contig11354.1160.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1185bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11354:2584..3768+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGGGCAACCAGGGGGCTCCGTCCGTAGTGTGGGGTAGGGAGAGAAA
CGTGTACCAGGAACAGCCGAGCCAAGTTCAGCACACCGACCACAGAACCA
GCAGACCAACAGCAAGCTGCAAGAGCAGGAGGGAGGGTCGGGAGAAGGGT
TGGTTGTGCTCCAGTGATCTCTGCTGGCTGTGCATGTCAGTGCGCCATGT
TGACGTATTTCAGGACCCTCCTCGTCGTGGAGGTGCTGCTGGCGCGTCTA
TCCGCTAATAGCAGCGCGGCGGCTGCTGCTGCTGTGCTGCGGCCCGGAGA
CATCGTATCGATGTCTCACAGGAGCAAGGTCACTGGGGGCGTGGAAGAGG
TGTGTGAGATTCGTCTTAGTGTTATGCATATGTTGGGCCAATATATTTAT
CGCAGGATACGCTTTGTGTCTACAAGATAACCCAGTGCTGTTTTGGATAG
TGGATGAGATATGTACACAGCAGCAGTGCAGCAGTTCACGTTGGCATCTT
CGAAGCAACGCTTTGCATGACTGGAATCCTCTGCATCTGCATATGTACAC
TTTATTTTGTACCAGTTCAGGCTGTAAGGAGAGAACCCTCGCAAGGACAG
AGTCAGGATATAGTTTTTGCATATTTCCCCCCCTCCTCCCTCCCCTCCCT
GTACGACGCATTTTATTGCTTTCGCGGACAGGCCGGCCCCGCTCTGATCC
TTTGCCCGGCATCATGTTTTTCTTGTCGACGTGGGCTTGCCCGATCGGCG
GGCAAAACACGATTGACAGAAACGCACACAGCTCGAAATAAACTCACTGA
AAAGACTTCTGCACATCCCTTTCGACTGCTGTGGTTATATCTCGAACGGG
TAGTCTTTCTGTGAGATTTGCTTTCTTTCTAATAAAAAAAATGTTGTTTG
TCGGGAGGGGTACACGGCTGCATCCTAAGTTGTCGTACTTGTAGCGAGAG
CTCGTGCGAAATAGCCCAATTCCCGCCCCCGTCTGCCCGACGTGTGCTCA
CGTAACAATCTGTTTTCTGCACCCACAAACACACACGCACATTGTAGAAA
CGGGAAGCACCGTGGGAGGAGGCCCTTCGATCGCAGATGCCTCGCTTCGG
ACGACCGGATACGGTCCAGTTCAAGCCTATCTTACCAGACGGCAGCATGT
CACACTCTCCCGACAGGGATCAGGTCGCTGTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11354:2584..3768+

>mRNA_Ecto-sp9_F_contig11354.1160.1 ID=mRNA_Ecto-sp9_F_contig11354.1160.1|Name=mRNA_Ecto-sp9_F_contig11354.1160.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11354:2584..3768+ (Ectocarpus species9 EcSCA_722f female)
ATGTTGACGTATTTCAGGACCCTCCTCGTCGTGGAGGTGCTGCTGGCGCG
TCTATCCGCTAATAGCAGCGCGGCGGCTGCTGCTGCTGTGCTGCGGCCCG
GAGACATCGTATCGATGTCTCACAGGAGCAAGGTCACTGGGGGCGTGGAA
GAGATGTTGACGTATTTCAGGACCCTCCTCGTCGTGGAGGTGCTGCTGGC
GCGTCTATCCGCTAATAGCAGCGCGGCGGCTGCTGCTGCTGTGCTGCGGC
CCGGAGACATCGTATCGATGTCTCACAGGAGCAAGGTCACTGGGGGCGTG
GAAGAGAAACGGGAAGCACCGTGGGAGGAGGCCCTTCGATCGCAGATGCC
TCGCTTCGGACGACCGGATACGGTCCAGTTCAAGCCTATCTTACCAGACG
GCAGCATGTCACACTCTCCCGACAGGGATCAGGTCGCTGTGTGAAAACGG
GAAGCACCGTGGGAGGAGGCCCTTCGATCGCAGATGCCTCGCTTCGGACG
ACCGGATACGGTCCAGTTCAAGCCTATCTTACCAGACGGCAGCATGTCAC
ACTCTCCCGACAGGGATCAGGTCGCTGTGTGA
back to top