mRNA_Ecto-sp9_F_contig1135.1159.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 524 bits (1350), Expect = 1.900e-181 Identity = 262/280 (93.57%), Postives = 269/280 (96.07%), Query Frame = 1
Query: 28 AQSAVRRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQEELEAVSSTPHVTERQEEGSDGNGEGDIEISEGVYCKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDAIDRANRSGDDTDPESKMEISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANFW 867
+QSA RRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQ ELEA SSTPHVTERQEEGSDGNGEGDIEIS+GVY KRAELR LQYYYDKSYAFDPKNIGVVL ETGVKID RIH VKSVDHGKYTLEGRESRITQWELL+NRCDE VTLDTDLRRFILHLVTKY VMMGSVVPALSGV+TGMLWNPNDAIDRA+RSGDDTDPE KM+ISELMSIKVRVDTLRDLSLAVFTKIP+EATLGANFW
Sbjct: 3 SQSAARRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQAELEAASSTPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATLGANFW 282
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 370 bits (950), Expect = 2.470e-116 Identity = 218/401 (54.36%), Postives = 232/401 (57.86%), Query Frame = 1
Query: 43 RRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQEELEAVSSTPHVTERQEEGSDGN------------------------------------------------------------------------------------------------------------------------------------------------GEGDIEISEGVYCKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDAIDRANRSGDDTDPESKMEISELMSIKVRVDTLRDLS 813
RR GRNRTATVPGKMPTGADKKDQDHDHWRKREA WAGWG Q+A DKKMA+TKEKRD AREVHEANQKKR+E+LEA SSTPHVTERQEEGS GN G+GDIEIS+GVY KRAELRNLQYYYDKSY DP+NI VV G+T VKIDG +HVVKSVDHGKYTLEGRES ITQWELL+ RCDEGVTL TDLRRFILHLVTKY VMMGSVVPAL+GVLT MLWNPNDA+ AN+ GDDTDPES M+ SELMSIK RVDTLRDLS
Sbjct: 20 RRSGRNRTATVPGKMPTGADKKDQDHDHWRKREAEWAGWGVQKASDKKMADTKEKRDDAREVHEANQKKREEDLEATSSTPHVTERQEEGSLGNRAKTTAAAIPEDNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNGGGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDLS 418
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI) HSP 1 Score: 292 bits (748), Expect = 2.550e-96 Identity = 147/197 (74.62%), Postives = 163/197 (82.74%), Query Frame = 1
Query: 28 AQSAVRRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQEELEAVSSTPHVTERQEEGSDGNGEGDIEISEGVYCKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGRESRITQWELLKNRCDEGVTLDTDLRRFILHL 618
+QSA RG RNR A M TGA K+D+DHDHW+ REAVWA W DQEAYDKKMAETK++RDAAR VHEA QK++QEELEA SST HVTERQE+ SDGNGE DIEI EGVY KR E+R+L+YYYDKSY FDPK+IGVV GET V+IDG +HVVKSVD GKY LEG +S ITQWELL NRC EGVTLDTDLRRFI HL
Sbjct: 3 SQSATGRGQRNRRARDLDAMQTGAGKQDEDHDHWQAREAVWASWADQEAYDKKMAETKDRRDAARTVHEAKQKEKQEELEAASSTSHVTERQEKVSDGNGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE) HSP 1 Score: 199 bits (506), Expect = 5.400e-54 Identity = 109/219 (49.77%), Postives = 142/219 (64.84%), Query Frame = 1
Query: 316 DGNGEGDIEISEGVYCKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALS--GVLT-GMLWNPNDAIDRANRSGDDTDPES-KMEISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANFWSDRHDESLKDFTAQPGSLSQLNFLGGLGCVA 960
D + +++++ V KR+EL L+YY+DK+Y F+P +I VV+G T VKIDGRI VV+S DHGKY L G + ITQWELL+NR EG TLD +LRRFI+ Y VMM VP G+ T GMLWN +A++RA D+ D ES KM + EL S++ + +R LSL +FT +P+ TL NFW D SL+DF GSLSQLN L GLGC +
Sbjct: 193 DASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLPKNFWGGAVDGSLRDFAEGSGSLSQLNCLKGLGCAS 410
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI) HSP 1 Score: 164 bits (416), Expect = 1.250e-41 Identity = 94/218 (43.12%), Postives = 138/218 (63.30%), Query Frame = 1
Query: 337 IEISEGVYCKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLEGRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPAL-----SGVLTGMLWNPNDAIDRANRSGDDTDPESKMEISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANFWSDRHDESLKDFTAQPGSLSQLNFLGGLGCVADDDLV 975
IEI +GV+ KRA L L+ Y++ Y FDP++IGV LG T V ID VV+S D G+Y+L S + QW +L+NR D GVTL+ + RRFI+HLVT Y MM VVP + ++ M+WNP +A R +T+ E + E+ ++++ RV+TLRDL+L +FT ++ TL A+FW +E L++F + GSL ++NFLG L CV + ++V
Sbjct: 755 IEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDG-SVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKR------ETNKERREELDQIIN---RVNTLRDLTLRIFTGAAVKDTLPASFWDVEGNEELREFAEEAGSLKKINFLGRLECVHNREVV 962
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU26_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.490e-21 Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 1
Query: 85 MPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQ 255
MPTGA KKDQDHDHW REAVWAGWG QEAYDKKMAETKE+RDAARE HE +K++Q
Sbjct: 1 MPTGAGKKDQDHDHWPLREAVWAGWGYQEAYDKKMAETKERRDAAREAHEIKRKEKQ 57
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.580e-16 Identity = 51/104 (49.04%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 553 LKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDAIDRANRSGDDTDPESKMEISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANF 864
++ RCDEG++LDT+LRR ANRSG TDPES M+ SELMSIKVRVDTLRD+SLAVFTKI +++TLGANF
Sbjct: 75 VETRCDEGLSLDTNLRR-------------------------------------ANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFTKILIQSTLGANF 141
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 8.860e-10 Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 1
Query: 397 YDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKYTLE---GRESR-ITQWELLKNRCDEG---VTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDA--IDRANRSGDDTDPESKMEISELMSIKVRVDTLRDLSLAVFTKIPM-EATLGANF--WSDRHDESLKDFTAQPGSLSQLNFL 939
Y+ +P +IG+++GET VK+DG + V SV+ G Y+L G S+ + QWE+L+NR +G TL+ D R+F + L+ +Y M ++VP L+ G P + +N + TD + L + V T R L+ A K+ M +A G F + D+ L+ F + GSL +LN L
Sbjct: 182 YNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVPYLNH---GQAAIPEGEGRVQVSNMTYKMTDVSGE----GLAARHEDVMTARSLTKAALKKLKMVDAIDGLRFPGLAQEGDDDLRTFAEREGSLGELNGL 367 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1135.1159.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1135.1159.1 >prot_Ecto-sp9_F_contig1135.1159.1 ID=prot_Ecto-sp9_F_contig1135.1159.1|Name=mRNA_Ecto-sp9_F_contig1135.1159.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=325bp MHPLSVTSFAQSAVRRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWback to top mRNA from alignment at Ecto-sp9_F_contig1135:18546..20187- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1135.1159.1 ID=mRNA_Ecto-sp9_F_contig1135.1159.1|Name=mRNA_Ecto-sp9_F_contig1135.1159.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1135:18546..20187- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1135:18546..20187- >mRNA_Ecto-sp9_F_contig1135.1159.1 ID=mRNA_Ecto-sp9_F_contig1135.1159.1|Name=mRNA_Ecto-sp9_F_contig1135.1159.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1950bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1135:18546..20187- (Ectocarpus species9 EcSCA_722f female)back to top |