mRNA_Ecto-sp9_F_contig11346.1155.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11346.1155.1
Unique NamemRNA_Ecto-sp9_F_contig11346.1155.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: High (affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.060e-82
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLVMIIV 375
            VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRS WVFPVLVMIIV
Sbjct:    7 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIV 131
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: High (affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 3.470e-54
Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLVMI 369
            V CFLDNPGVLMYGMMCV+YTT MWLLLASYL LPVS T +TI +++GMT+ YGG  CVVW +ES+ FP  +GV AI + W+LSPI +G+ S LVFL +R FVLRSP+AF RS WVFP+LVM+
Sbjct:   29 VECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMV 151
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.880e-53
Identity = 88/123 (71.54%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLVMI 369
            V CFLDNPG+LMYGMMCV+YTT MWLLLASYLELPVS T STI +I+GM +AY G  CVVW++ES+ FP F+GV AI + W+LSPI +GVAS LVFL +R FVLRSP+AF RS WVFPVLVM+
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMV 172
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.580e-40
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLV 363
            + CF DNPG+LMYG MCV+YT  +WLLLAS+ ELPVS T STI  IVGMT+ Y G  CVVW+ E++HFP  +GV AI++ W L P+++GV + L+F  +R  VLRS HA  RS+ VFP+LV
Sbjct:   90 IECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLV 210
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 4.700e-40
Identity = 69/121 (57.02%), Postives = 91/121 (75.21%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLV 363
            + CF DNPG+LMYG MCV+YTT +WLLLASY ELPVS T STI  IVGM + Y G  CVVW+ E++ FP  +G+ AI+  W+LSP+++ V +  +FL +RTFVLRSP + +R++ VFP LV
Sbjct:    5 IECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLV 125
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.620e-38
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLV 363
            + CF DNPG+LMYG MCV+YTT +WLLLAS+ ELPVS T ST+  IVGM + Y G  CVVW+ E++ FP  +GV AI+  W LSP+ + V +  +FL +RTFVLRSP A +R++ VFP LV
Sbjct:   89 IECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLV 209
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.200e-37
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 1 
Query:    4 SCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLV 363
             CF DNPG+LMYG MCV+YTT  WLLLAS+ ELPVS T STI  IVGM + Y G  CVVW+ +++ FP  +G+ AI+  W+LSP+++ V +  +FL +RTFVLRSP + +R++ VFP LV
Sbjct:   91 ECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLV 210
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.960e-35
Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVLV 363
            V CF+DNPG+LMYG MCV+YT+  WLLLAS+ ELPVS T +T+  IVGM + Y G  CVVW+ E+E FP  +GV AI+  W LSP+++ V +  ++  +RTFVLR+  + ++++ +FP LV
Sbjct:   97 VGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLV 217
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T173_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 2.400e-34
Identity = 59/119 (49.58%), Postives = 87/119 (73.11%), Query Frame = 1 
Query:    4 SCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVL 360
             CF D+PG+LMYG +CV+++ A+WL++AS+LE+PVS T S +  ++GMT+   G +CVVW  +S+ FP  +GV AI++ WLLSPIV+G  S + FL LR  V+RS +++ R+   FPVL
Sbjct:   16 DCFNDDPGLLMYGCLCVIFSVAIWLVVASFLEMPVSTTHSCVGGMIGMTMVARGSSCVVWSAKSDTFPYIKGVAAIVVSWLLSPIVSGGFSFVFFLTLRALVMRSQNSYARARLAFPVL 134
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BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Match: Phosphate (transporter n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IV20_HETAK)

HSP 1 Score: 132 bits (333), Expect = 4.720e-34
Identity = 58/120 (48.33%), Postives = 90/120 (75.00%), Query Frame = 1 
Query:    1 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSLWVFPVL 360
            + CF+D+  VLMYGM CV++ T +WLLLA++L++PVS T S +  I+GMT+A  G +CVVWH +++ FP  +GV AI++ W LSPI +GV +  +FL  RTF+LRS +++ R+++ +P+L
Sbjct:   88 IDCFMDDGPVLMYGMCCVIFCTGLWLLLATFLKMPVSTTHSVVGGIIGMTIAAKGGSCVVWHADTDTFPYVKGVSAIVVSWFLSPIFSGVGAAALFLFCRTFILRSENSYNRAIYFYPLL 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11346.1155.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
High1.060e-8299.20affinity phosphate transporter n=1 Tax=Ectocarpus ... [more]
High3.470e-5467.48affinity phosphate transporter n=1 Tax=Ectocarpus ... [more]
Phosphate2.880e-5371.54transporter n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Phosphate1.580e-4057.85transporter n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Phosphate4.700e-4057.02transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Phosphate1.620e-3857.02transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Phosphate1.200e-3755.83transporter n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
Phosphate1.960e-3551.24transporter n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Hypothetical2.400e-3449.58protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucim... [more]
Phosphate4.720e-3448.33transporter n=3 Tax=Heterosigma akashiwo TaxID=282... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11346contigEcto-sp9_F_contig11346:2707..3361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue2.9e-63
Seed eggNOG ortholog2880.D8LJP9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
Ec32 ortholog descriptionPhosphate transporter
Ec32 orthologEc-17_002870.1
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Hectar predicted targeting categorysignal anchor
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928381.6247468-CDS-Ecto-sp9_F_contig11346:2706..30121622928381.6247468-CDS-Ecto-sp9_F_contig11346:2706..3012Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11346 2707..3012 +
1692277853.06915-CDS-Ecto-sp9_F_contig11346:2706..30121692277853.06915-CDS-Ecto-sp9_F_contig11346:2706..3012Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11346 2707..3012 +
1622928381.664349-CDS-Ecto-sp9_F_contig11346:3292..33611622928381.664349-CDS-Ecto-sp9_F_contig11346:3292..3361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11346 3293..3361 +
1692277853.0809872-CDS-Ecto-sp9_F_contig11346:3292..33611692277853.0809872-CDS-Ecto-sp9_F_contig11346:3292..3361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11346 3293..3361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11346.1155.1prot_Ecto-sp9_F_contig11346.1155.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11346 2707..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11346.1155.1

>prot_Ecto-sp9_F_contig11346.1155.1 ID=prot_Ecto-sp9_F_contig11346.1155.1|Name=mRNA_Ecto-sp9_F_contig11346.1155.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMT
LAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALR
TFVLRSPHAFRRSLWVFPVLVMIIV
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mRNA from alignment at Ecto-sp9_F_contig11346:2707..3361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11346.1155.1 ID=mRNA_Ecto-sp9_F_contig11346.1155.1|Name=mRNA_Ecto-sp9_F_contig11346.1155.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=655bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11346:2707..3361+ (Ectocarpus species9 EcSCA_722f female)
GTGAGCTGCTTCCTCGACAACCCCGGAGTGCTCATGTACGGCATGATGTG
TGTCTTGTACACGACGGCGATGTGGCTCCTGCTCGCGTCCTACCTCGAGC
TTCCCGTGTCCGCCACCCAGTCCACGATCAGCAGCATTGTGGGGATGACC
CTCGCCTACGGGGGGCGAGCGTGCGTCGTTTGGCACCGAGAATCGGAACA
CTTTCCCGGCTTTCAAGGAGTCGGCGCCATTCTCCTGTACTGGCTCCTGT
CGCCGATCGTCGCGGGGGTCGCGTCGTGTCTGGTGTTCCTGGCGCTCCGT
ACCTTCGTGAGTGCTCTTTCCTGTGTGTCGAAATTTCTGTGGCTCCTGCC
TCTCCTCCCATGCTTGTGCCCTTTACAAGCCGAATTCGAACCATTAGACT
ATTCGTCAGCGTTGGCTAGTCAAATAGGTTGATTTCGGCTTCTGTAGCCC
CCCCCCCCCCTGCCCCAAATAGTTGGGGCAGCATGAAGGGTGCTAGAATG
TACCAATGAGAGTACGCTGCTCGTTTTTAACCGCGTCCCCGCCATACCCA
TTCCACGTTTGCATCGCGTGAAACTCTTTCATGCAGGTACTGCGGTCTCC
CCACGCCTTCCGACGATCCCTCTGGGTGTTCCCCGTCTTGGTAATGATCA
TTGTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11346:2707..3361+

>mRNA_Ecto-sp9_F_contig11346.1155.1 ID=mRNA_Ecto-sp9_F_contig11346.1155.1|Name=mRNA_Ecto-sp9_F_contig11346.1155.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11346:2707..3361+ (Ectocarpus species9 EcSCA_722f female)
GTGAGCTGCTTCCTCGACAACCCCGGAGTGCTCATGTACGGCATGATGTG
TGTCTTGTACACGACGGCGATGTGGCTCCTGCTCGCGTCCTACCTCGAGC
TTCCCGTGTCCGCCACCCAGTCCACGATCAGCAGCATTGTGGGGATGACC
CTCGCCTACGGGGGGCGAGCGTGCGTCGTTTGGCACCGAGAATCGGAACA
CTTTCCCGGCTTTCAAGGAGTCGGCGCCATTCTCCTGTACTGGCTCCTGT
CGCCGATCGTCGCGGGGGTCGCGTCGTGTCTGGTGTTCCTGGCGCTCCGT
ACCTTCGTGAGCTGCTTCCTCGACAACCCCGGAGTGCTCATGTACGGCAT
GATGTGTGTCTTGTACACGACGGCGATGTGGCTCCTGCTCGCGTCCTACC
TCGAGCTTCCCGTGTCCGCCACCCAGTCCACGATCAGCAGCATTGTGGGG
ATGACCCTCGCCTACGGGGGGCGAGCGTGCGTCGTTTGGCACCGAGAATC
GGAACACTTTCCCGGCTTTCAAGGAGTCGGCGCCATTCTCCTGTACTGGC
TCCTGTCGCCGATCGTCGCGGGGGTCGCGTCGTGTCTGGTGTTCCTGGCG
CTCCGTACCTTCGTACTGCGGTCTCCCCACGCCTTCCGACGATCCCTCTG
GGTGTTCCCCGTCTTGGTAATGATCATTGTCGTACTGCGGTCTCCCCACG
CCTTCCGACGATCCCTCTGGGTGTTCCCCGTCTTGGTAATGATCATTGTC
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