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Homology
BLAST of mRNA_Ecto-sp9_F_contig1133.1143.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN09_ECTSI) HSP 1 Score: 521 bits (1343), Expect = 2.600e-181 Identity = 372/381 (97.64%), Postives = 373/381 (97.90%), Query Frame = 3
Query: 72 MQKPRGRPTFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIMPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAGGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEGGXXXXXXXXXXXXAAGSVSIRRVFVVREGLDRLPPEDADKE 1214
MQKPRGR TFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGI+PGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVA GGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAE XXXXXXXXXXXX GS SIRRVFVVREGLDRLPPEDADKE
Sbjct: 1 MQKPRGRATFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAAGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEX-XXXXXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKE 380
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 524.2 |
| Seed ortholog evalue | 4.9e-146 |
| Seed eggNOG ortholog | 2880.D8LN09 |
| EggNOG OGs | 2E86R@1,2SEQ5@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-27_000940.1 |
| Exons | 6 |
| Model size | 1214 |
| Cds size | 1143 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928379.744998-CDS-Ecto-sp9_F_contig1133:77..359 | 1622928379.744998-CDS-Ecto-sp9_F_contig1133:77..359 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 78..359 - |
| 1692277852.3340049-CDS-Ecto-sp9_F_contig1133:77..359 | 1692277852.3340049-CDS-Ecto-sp9_F_contig1133:77..359 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 78..359 - |
| 1622928379.7599993-CDS-Ecto-sp9_F_contig1133:832..995 | 1622928379.7599993-CDS-Ecto-sp9_F_contig1133:832..995 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 833..995 - |
| 1692277852.3468845-CDS-Ecto-sp9_F_contig1133:832..995 | 1692277852.3468845-CDS-Ecto-sp9_F_contig1133:832..995 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 833..995 - |
| 1622928379.771083-CDS-Ecto-sp9_F_contig1133:1497..1621 | 1622928379.771083-CDS-Ecto-sp9_F_contig1133:1497..1621 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 1498..1621 - |
| 1692277852.3550837-CDS-Ecto-sp9_F_contig1133:1497..1621 | 1692277852.3550837-CDS-Ecto-sp9_F_contig1133:1497..1621 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 1498..1621 - |
| 1622928379.7847307-CDS-Ecto-sp9_F_contig1133:2112..2281 | 1622928379.7847307-CDS-Ecto-sp9_F_contig1133:2112..2281 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 2113..2281 - |
| 1692277852.3642104-CDS-Ecto-sp9_F_contig1133:2112..2281 | 1692277852.3642104-CDS-Ecto-sp9_F_contig1133:2112..2281 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 2113..2281 - |
| 1622928379.803376-CDS-Ecto-sp9_F_contig1133:2549..2954 | 1622928379.803376-CDS-Ecto-sp9_F_contig1133:2549..2954 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 2550..2954 - |
| 1692277852.3729944-CDS-Ecto-sp9_F_contig1133:2549..2954 | 1692277852.3729944-CDS-Ecto-sp9_F_contig1133:2549..2954 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1133 2550..2954 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928379.9043498-UTR-Ecto-sp9_F_contig1133:2954..2995 | 1622928379.9043498-UTR-Ecto-sp9_F_contig1133:2954..2995 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig1133 2955..2995 - |
| 1692277852.3807461-UTR-Ecto-sp9_F_contig1133:2954..2995 | 1692277852.3807461-UTR-Ecto-sp9_F_contig1133:2954..2995 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig1133 2955..2995 - |
| 1622928379.916011-UTR-Ecto-sp9_F_contig1133:3636..3666 | 1622928379.916011-UTR-Ecto-sp9_F_contig1133:3636..3666 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig1133 3637..3666 - |
| 1692277852.3885145-UTR-Ecto-sp9_F_contig1133:3636..3666 | 1692277852.3885145-UTR-Ecto-sp9_F_contig1133:3636..3666 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig1133 3637..3666 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1133.1143.1 >prot_Ecto-sp9_F_contig1133.1143.1 ID=prot_Ecto-sp9_F_contig1133.1143.1|Name=mRNA_Ecto-sp9_F_contig1133.1143.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=381bp
MQKPRGRPTFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQA LSPPSQQQLSNQRRSPTPVEAAQQQARGWGSSLMAGGGSVGGSGGSRSNP APHGGGSRRRSPGRATAASSSVLQCAAGDDEDDNYGSADYSEYGYEPEFE LQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAE DLSAGSDPESDIGAMIGIMPGKKFVATTKITRRVIESAEDTKIFEHEQGQ ATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLA VAGGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEGGGGVPAPEAA PAPAAGSVSIRRVFVVREGLDRLPPEDADKE back to topmRNA from alignment at Ecto-sp9_F_contig1133:78..3666- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig1133.1143.1 ID=mRNA_Ecto-sp9_F_contig1133.1143.1|Name=mRNA_Ecto-sp9_F_contig1133.1143.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3589bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1133:78..3666- (Ectocarpus species9 EcSCA_722f female) CCACCACTGGAGGCTGCTGAATTAGTGAGGGTGAGTACTTGGCGGAGATA
AGGCGTGATGGTCTTTGCGCAGAGTGTTTGATGGTGTCATACCAACACAT
TTCGCTTGCGGCACCAAGGTCTGCTCATGATCTTTTGCAGCGTTGGCGGC
ACACTCAGCTGAGAAGAGCTTTGCTGTCCCCGTCGGCTACCCCAAATACT
ATCTTACCCCAACATACTTCCCCACAACTTCTACGACCATCCGTTGTTAC
CACACACGAGTGCATCTTCTGTCTCGACGTGTGCGCTCTGCCCAACATGA
ACCCACATGCCTCATGCCTCACGGAGGGGGGGGGGGGGGGTCTGGTTTCT
TACGTGCGATGCTTGCCAGCGGTCTTGCTCCTCGTCTACTGCTTGCTGTC
TATTGCTCCCGAGCTGTGATGATGTTATGTATCCGTAGCCACGTCGAAAG
ATTGCAACAGCAGTGTGTCACCCGCACTTCCAACTCGGTCAGGATTTCGT
TCTCATGAACTTCCTCGGGTTCGATCATGTGGCAAGGCGACAAGTTTTGG
TCGGTATACACGCATCTGGAGCAAGTCCTGTTTCAGCAGCAATATGCACT
TTGCGAAGATAAGATAGCCTATACCGAACACCCCACTTCGTATCGCTGGC
TCACAACCGTCGTCCATTCAGACACCGTACAGCATCAAGTCGGCGGCGGC
GGCAACCACATCATGCAGAAGCCAAGAGGCAGGCCGACCTTCGCCCTCCT
CTGCTACTACCTGGGAGCGGCAACAACAACAAGAACCCTCCCGACCGCTG
TGTCCGGCTTCCATCACCCTTGCGCCGCCCGCCGCGTCCGCCGCCGCCCA
GCGGGACAGGCGCTTAGCCCTCCCTCCCAGCAACAGTTGTCCAACCAAAG
AAGGAGCCCCACGCCTGTGGAGGCGGCGCAACAGCAAGCCCGGGGCTGGG
GGTCAAGCTTGATGGCCGGCGGAGGTAGCGTCGGCGGCAGCGGTGGCTCC
AGGAGCAATCCCGCTCCCCACGGTGGCGGGAGCAGGCGGAGATCTCCGGG
GCGGGCGACGGCGGCTTCCTCCTCGGTGCTGCAGTGCGCCGCTGGAGACG
ACGAAGACGACAATTACGTGAGTTTCTGCAGCAGCAGCAGCAGCAGTGTC
GGTGGTACTGTAGTGACTTCTGCCTAGATGGGGGGAGGTCTTTTTGGTAC
TCATGTGGTTCGGTTGTGGCGTTTTGTTATTTTGTTGGTGTTGGTATATG
GTTTCGTTAACATATTGTTTCGACCTGCCTGGTTGAGGGGGCGGTCTTTT
TGGTACGCATGTGATTCGGTTTGGTGGCGTTTTCTGTGGGTGTTGGTAAA
TAAATCGGCCCTCACTTGCGCGGACGTGGGCGCAGGGGAGCGCTGACTAC
TCCGAGTACGGCTACGAGCCGGAGTTCGAGCTGCAGGGGGAGGAGCCGAA
CGCGGACGAAGAGACGCTAGCGAGGTGGCGGTTGGAGAAGCTTCTTGCCA
ACGACCGGTGGCAGTTCGGAAAGTACGGGACGCAAAACGTGGGCAACTGG
ATCGGTAAGAGAGGGGGTCCGGTTTTGCTGCGCTTCTTCTTCTTTTAAGC
CTCGTTTCTGGAATACGCAGGGTGCAACACCAAGTCCGCGATGCCTGTGG
AGCGCGGCAGCATGTGTGCATGTCGCCAGTTGTGCCTATATGTCATTTCG
GGTGGGCGGGTGCATGTGTTGCGTGTCCAACTAAACAGGACCCGCCGCTC
ACAGAACCGGGCGCTTCCGAGCTTCAATTCAAGCACGGCTTGTGAGATCG
TTCGTGTGTGCTTCGCCCCTCCTCATCGAGATGAGCCGTTAACCTACGCT
GGCTCCCCGCCAGTGCGCCGCACCAAAAGTAGCGAATAGTTCGTCGAGGT
TGAGGGGAAACCCGTTTCTTTGCGCAGATGTGTCGGTGTTTTGTTTGCGT
TTGCGGGGGAAGTTATAGCGCGCGCGTTTTTGGCGTGACTGAGTGATTTC
GCGAATGGTCTTGCTTGGTGTCGTCGTCGTTCGCGTTTATTTTAGGGAGC
TGGCAGGAGTACGTCGCGGAAGACCTCAGCGCGGGGTCAGACCCAGAGAG
CGACATCGGGGCCATGATCGGTATCATGCCGGGAAAGAAGTTCGTGGCCA
CCACCAAGATCACCCGCAGGTTTGTGTGCTTATGCGCGGATGGAAACGCG
TTTTTGGCACCCCGTATGTGTTTTTTTATTCTTGTGCCCAGCACGCAGAG
AATTATGACTCGTATGCGTCTTGTCCGTGTAGTGCATGCATGGCGTTGGG
ACACACGGCCCTCGTCGTGAGAAACCAACCGTCTTTTTAGGAAACAAACC
GTTTGTCAAGTCGAAGGACTACATGGCGCCTATTTCCTGTGCGGAATGTC
GTCAAATCGGCACGCACGTCATCAGGGCCTGAAAGAGAATTCGGTGTAAT
TTGTAGACCAACAGATGTTATTGCTCAATCTCGGTACCCACAACGAACGC
CTCTCCCTCTGGTGCACACGTGTTCACCCTCCGATACTGTTATCTGTTTT
CCGGCACGACCCCTCAACAACAACAACAACGACGACGAGAATCGGGCTCA
GCCAAGATGCGCCGGCGGGATGCTCTAACACGCCCCGTGTCTCATGTTGT
TCCCACTTCAACAACACGCAGGGTTATCGAGTCGGCAGAAGACACAAAGA
TATTCGAGCACGAGCAGGGGCAGGCGACGGGGGGGGAAGGGCAGGGGGCG
GTGGGATACGAATCCGAGGCGTGTCCGCAGCCGGTGGTCGAGACCCTCTT
CTCCGACTCGTTCCGAGGCGGCAACGGCACCCAGGTGCGTGTCTTTAGCG
TACCGGATTTTTAGGGTCGAGCGTGCTTTCGTTTGGCGAGGGGGGGGGGG
GGGGGTCGTAGTCATATCTGACATTCTTCTTCCTGTCGGTGTTTTTTTTC
CTGTTACGTTGATGTAGTGGGTAGTGAGGTAGTGGTGTTGGCAGAACGGG
GGCTTAGTTCGCCCTAACGAGAGGTAGAGAGTAATGGATCCTCGTCTGCG
ATGGCGTGGTCGATTACCGTCGTGTCGAGTGTGCGTGTGTGTGTGGGGTG
TTGGTTGACGGCGGCCTGCCTATCCGGTTATTGTCGGGTCTTTGACGATA
CTGCTATTGTTGCACCTCTGCTGTTGCTATTGCTGCTGCTGCTCTTGCGC
TATCCTTCGACGCGTGTACCACAACGGCGTCATCGGCCGCAACCGCTACC
GCCACCACCACCACCAACAACCCGGTCCTCCTTCATCTCGCCACGGACGC
GAACAAGGTCGTAGGAAACGCGTACACCTCGGCGGAAACTCTGGCAGTGG
CGGGGGGTGGCGCGGATGGCCCCTGGATAGAGGTAGGCCTTCGGGTCCAG
GACGTCCGAATGCGGTGCGTTTTCGAGTACGGACCGGGAGCGGGGGGCTC
GGTCGACGCAGAGGGGGGGGGCGGGGTGCCGGCACCAGAGGCAGCACCAG
CGCCAGCAGCAGGGTCGGTGAGCATCCGGAGGGTGTTTGTGGTCCGAGAG
GGGCTCGACAGACTGCCGCCGGAGGACGCCGATAAGGAG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig1133:78..3666- >mRNA_Ecto-sp9_F_contig1133.1143.1 ID=mRNA_Ecto-sp9_F_contig1133.1143.1|Name=mRNA_Ecto-sp9_F_contig1133.1143.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2286bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1133:78..3666- (Ectocarpus species9 EcSCA_722f female) ATGCAGAAGCCAAGAGGCAGGCCGACCTTCGCCCTCCTCTGCTACTACCT GGGAGCGGCAACAACAACAAGAACCCTCCCGACCGCTGTGTCCGGCTTCC ATCACCCTTGCGCCGCCCGCCGCGTCCGCCGCCGCCCAGCGGGACAGGCG CTTAGCCCTCCCTCCCAGCAACAGTTGTCCAACCAAAGAAGGAGCCCCAC GCCTGTGGAGGCGGCGCAACAGCAAGCCCGGGGCTGGGGGTCAAGCTTGA TGGCCGGCGGAGGTAGCGTCGGCGGCAGCGGTGGCTCCAGGAGCAATCCC GCTCCCCACGGTGGCGGGAGCAGGCGGAGATCTCCGGGGCGGGCGACGGC GGCTTCCTCCTCGGTGCTGCAGTGCGCCGCTGGAGACGACGAAGACGACA ATTACATGCAGAAGCCAAGAGGCAGGCCGACCTTCGCCCTCCTCTGCTAC TACCTGGGAGCGGCAACAACAACAAGAACCCTCCCGACCGCTGTGTCCGG CTTCCATCACCCTTGCGCCGCCCGCCGCGTCCGCCGCCGCCCAGCGGGAC AGGCGCTTAGCCCTCCCTCCCAGCAACAGTTGTCCAACCAAAGAAGGAGC CCCACGCCTGTGGAGGCGGCGCAACAGCAAGCCCGGGGCTGGGGGTCAAG CTTGATGGCCGGCGGAGGTAGCGTCGGCGGCAGCGGTGGCTCCAGGAGCA ATCCCGCTCCCCACGGTGGCGGGAGCAGGCGGAGATCTCCGGGGCGGGCG ACGGCGGCTTCCTCCTCGGTGCTGCAGTGCGCCGCTGGAGACGACGAAGA CGACAATTACGGGAGCGCTGACTACTCCGAGTACGGCTACGAGCCGGAGT TCGAGCTGCAGGGGGAGGAGCCGAACGCGGACGAAGAGACGCTAGCGAGG TGGCGGTTGGAGAAGCTTCTTGCCAACGACCGGTGGCAGTTCGGAAAGTA CGGGACGCAAAACGTGGGCAACTGGATCGGGGAGCGCTGACTACTCCGAG TACGGCTACGAGCCGGAGTTCGAGCTGCAGGGGGAGGAGCCGAACGCGGA CGAAGAGACGCTAGCGAGGTGGCGGTTGGAGAAGCTTCTTGCCAACGACC GGTGGCAGTTCGGAAAGTACGGGACGCAAAACGTGGGCAACTGGATCGGG AGCTGGCAGGAGTACGTCGCGGAAGACCTCAGCGCGGGGTCAGACCCAGA GAGCGACATCGGGGCCATGATCGGTATCATGCCGGGAAAGAAGTTCGTGG CCACCACCAAGATCACCCGCAGGGAGCTGGCAGGAGTACGTCGCGGAAGA CCTCAGCGCGGGGTCAGACCCAGAGAGCGACATCGGGGCCATGATCGGTA TCATGCCGGGAAAGAAGTTCGTGGCCACCACCAAGATCACCCGCAGGGTT ATCGAGTCGGCAGAAGACACAAAGATATTCGAGCACGAGCAGGGGCAGGC GACGGGGGGGGAAGGGCAGGGGGCGGTGGGATACGAATCCGAGGCGTGTC CGCAGCCGGTGGTCGAGACCCTCTTCTCCGACTCGTTCCGAGGCGGCAAC GGCACCCAGGGTTATCGAGTCGGCAGAAGACACAAAGATATTCGAGCACG AGCAGGGGCAGGCGACGGGGGGGGAAGGGCAGGGGGCGGTGGGATACGAA TCCGAGGCGTGTCCGCAGCCGGTGGTCGAGACCCTCTTCTCCGACTCGTT CCGAGGCGGCAACGGCACCCAGGTCGTAGGAAACGCGTACACCTCGGCGG AAACTCTGGCAGTGGCGGGGGGTGGCGCGGATGGCCCCTGGATAGAGGTA GGCCTTCGGGTCCAGGACGTCCGAATGCGGTGCGTTTTCGAGTACGGACC GGGAGCGGGGGGCTCGGTCGACGCAGAGGGGGGGGGCGGGGTGCCGGCAC CAGAGGCAGCACCAGCGCCAGCAGCAGGGTCGGTGAGCATCCGGAGGGTG TTTGTGGTCCGAGAGGGGCTCGACAGACTGCCGCCGGAGGACGCCGATAA GGAGGTCGTAGGAAACGCGTACACCTCGGCGGAAACTCTGGCAGTGGCGG GGGGTGGCGCGGATGGCCCCTGGATAGAGGTAGGCCTTCGGGTCCAGGAC GTCCGAATGCGGTGCGTTTTCGAGTACGGACCGGGAGCGGGGGGCTCGGT CGACGCAGAGGGGGGGGGCGGGGTGCCGGCACCAGAGGCAGCACCAGCGC CAGCAGCAGGGTCGGTGAGCATCCGGAGGGTGTTTGTGGTCCGAGAGGGG CTCGACAGACTGCCGCCGGAGGACGCCGATAAGGAG back to top
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