mRNA_Ecto-sp9_F_contig11316.1134.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11316.1134.1
Unique NamemRNA_Ecto-sp9_F_contig11316.1134.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11316.1134.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 518 bits (1334), Expect = 1.540e-164
Identity = 274/296 (92.57%), Postives = 280/296 (94.59%), Query Frame = 2 
Query:    2 TDPMMGSSCRSVWVVGGGGNDGGLSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDAATAMTASATEERAAGTDGTAAATATGSSSGGVSGAGSAEPGSRRLVVAKAPSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDDSGDGEGGRGLFPCVSLRASGDAAVLLGLKQGAATITYRSPPSEKKSGGRSSPS 889
            TDP MGSSCRSVWVVG        SAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWD ATAMTASATEERAAGTDGTAAATATGSSSGGVS AGSA PGSRRLVVA+APSVAGEGYQTGKWLWEWH++SCGNR SVGVCRRDVAAISAAGVPLQGAGGGGAG RADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGD SGDGEGGRGL+PCVSLR +GDAAVLLGLKQGAATITYRSPPSEKKSGGR+SPS
Sbjct: 6433 TDPGMGSSCRSVWVVGXXXXXXXXSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDEATAMTASATEERAAGTDGTAAATATGSSSGGVSDAGSAGPGSRRLVVAEAPSVAGEGYQTGKWLWEWHVMSCGNRVSVGVCRRDVAAISAAGVPLQGAGGGGAGGRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDHSGDGEGGRGLYPCVSLRVNGDAAVLLGLKQGAATITYRSPPSEKKSGGRNSPS 6728
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BLAST of mRNA_Ecto-sp9_F_contig11316.1134.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 501 bits (1291), Expect = 9.150e-159
Identity = 264/271 (97.42%), Postives = 265/271 (97.79%), Query Frame = 2 
Query:    2 TDPMMGSSCRSVWVVGGGGNDGGLSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDAATAMTASATEERAAGTDGTAAATATGSSSGGVSGAGSAEPGSRRLVVAKAPSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDDSGDGEGGRGLFPCVSLRASGDAAVLLGL 814
            TD  MGSSCRSVWVVGG    GGLSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDAATAMTASATEERAAGTDGTAAATATGSSSGGVSGAGSAEPGSRRLVVA+APSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDDSGDGEGGRGLFPCVSLRASGDAAVLLGL
Sbjct: 5916 TDLAMGSSCRSVWVVGGXXXXGGLSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDAATAMTASATEERAAGTDGTAAATATGSSSGGVSGAGSAEPGSRRLVVAEAPSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDDSGDGEGGRGLFPCVSLRASGDAAVLLGL 6186
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BLAST of mRNA_Ecto-sp9_F_contig11316.1134.1 vs.
Match: HERC1 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VSI3_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 1.290e-6
Identity = 47/155 (30.32%), Postives = 70/155 (45.16%), Query Frame = 2 
Query:  386 TGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDDSGDG---EGGRGLFPCVSLRASGDAAVLLGLKQGAATITY 841
            +GKW+WE  ++S      VG+  R     +  G   Q             W ++S+    H G S     P   F  GDV+GVE+D D GT+ +L N   +G  +  D R++  +         G+G+ P ++  A GDA  LLGLK G    T+
Sbjct:    7 SGKWMWEAKVLSVQGHVVVGMATRGAVVRNHLGCERQS------------WGFKSNRECFHKGSSKPYGKP---FSGGDVIGVEVDMDNGTIEWLVNGTGLGIAY-TDLRAQAMEHSSVCHIPDGKGVVPGLTTYAQGDAVKLLGLKSGHGVRTW 145
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BLAST of mRNA_Ecto-sp9_F_contig11316.1134.1 vs.
Match: putative (HECT E3 ubiquitin n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007122A2F)

HSP 1 Score: 55.5 bits (132), Expect = 9.460e-5
Identity = 37/107 (34.58%), Postives = 51/107 (47.66%), Query Frame = 2 
Query:  536 WLYRSDGNLSHGGESTERMCPGGGFDSGDVVGVELDADAGTLAFLKNDAYVGGQFK---IDRRSEGDDSGDGEGGRGLFPCVSLRASGDAAVLLGLKQGAATITYRS 847
            W ++  G   H         P   +  GDV+ VELD D GTLAF KN+ Y+G  F    ++  S  +         G FP V+   SGD+  +LGL++G  T  Y S
Sbjct:  360 WSFQPTGEKWHSNIGYNYGPPRPSYCEGDVISVELDLDQGTLAFYKNNQYLGIAFSDLLVENPSVEN---------GFFPAVTSYRSGDSIEVLGLREGLITDEYPS 457
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11316.1134.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.540e-16492.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.150e-15997.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
HERC11.290e-630.32protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
putative9.460e-534.58HECT E3 ubiquitin n=1 Tax=Blastocystis sp. subtype... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11316contigEcto-sp9_F_contig11316:1029..2689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score503.1
Seed ortholog evalue1e-139
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size983
Cds size972
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11316.1134.1prot_Ecto-sp9_F_contig11316.1134.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11316 1029..2679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928378.3761463-CDS-Ecto-sp9_F_contig11316:1028..19801622928378.3761463-CDS-Ecto-sp9_F_contig11316:1028..1980Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11316 1029..1980 -
1692277851.7258816-CDS-Ecto-sp9_F_contig11316:1028..19801692277851.7258816-CDS-Ecto-sp9_F_contig11316:1028..1980Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11316 1029..1980 -
1622928378.3863866-CDS-Ecto-sp9_F_contig11316:2659..26791622928378.3863866-CDS-Ecto-sp9_F_contig11316:2659..2679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11316 2660..2679 -
1692277851.7365613-CDS-Ecto-sp9_F_contig11316:2659..26791692277851.7365613-CDS-Ecto-sp9_F_contig11316:2659..2679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11316 2660..2679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928378.3973937-UTR-Ecto-sp9_F_contig11316:2679..26891622928378.3973937-UTR-Ecto-sp9_F_contig11316:2679..2689Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11316 2680..2689 -
1692277851.748694-UTR-Ecto-sp9_F_contig11316:2679..26891692277851.748694-UTR-Ecto-sp9_F_contig11316:2679..2689Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11316 2680..2689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11316.1134.1

>prot_Ecto-sp9_F_contig11316.1134.1 ID=prot_Ecto-sp9_F_contig11316.1134.1|Name=mRNA_Ecto-sp9_F_contig11316.1134.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=324bp
MMGSSCRSVWVVGGGGNDGGLSAAGRGFSALNAGLPSQSGPLIATVEVHP
EPPSAADFPDPASWDAATAMTASATEERAAGTDGTAAATATGSSSGGVSG
AGSAEPGSRRLVVAKAPSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRD
VAAISAAGVPLQGAGGGGAGDRADLWLYRSDGNLSHGGESTERMCPGGGF
DSGDVVGVELDADAGTLAFLKNDAYVGGQFKIDRRSEGDDSGDGEGGRGL
FPCVSLRASGDAAVLLGLKQGAATITYRSPPSEKKSGGRSSPSSPPSPSG
EPEAAAAVTADAEAAAATAAATVG
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mRNA from alignment at Ecto-sp9_F_contig11316:1029..2689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11316.1134.1 ID=mRNA_Ecto-sp9_F_contig11316.1134.1|Name=mRNA_Ecto-sp9_F_contig11316.1134.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1661bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11316:1029..2689- (Ectocarpus species9 EcSCA_722f female)
CACGGATCCTATGATGGGGTCGTCGTGCAGGTGTGTTGGGTGGGGAGCAG
AGACCTCGGGAGAGGTGGTGGAGCTGGCTGGTGCTGCTGAGTTGTTGTTT
TGTTGTAGCGGTCGCTCGTCGGTCGCCAAGTTCGGGCTGTGATGGTAAAA
CAAACCAACCCTCTCGGGTATCGCGTGATAGGGAAGGAAAAATGTACGCG
AGAAACAAGAAACAACGCGCACACACATGTGGGGGGTACTGCGCAGAGAG
AGTGACCGCTACATACGGATGATCACGAATACTGACTCGAAACCGATATT
TGAGTAATTCATGCCATGTAAAAGGCCATCATTACCTTAGATCACGGCGG
CCACAGCTGCAGCTGTAGACAAATCAGGTAAATTGGACAGAGTAGCGGGT
ACGAAGCGGTGGTCGTGAGCATGTTGGTTGACTCCGGCGCCTGGAGTACG
TGTCCGCCGTTGCGCCGATGCCCGTGAGGCTGAAAAATTCTTGCGTTGTG
GATTGTACACGGCTTGTTGGGTGTAGCGAGTGCGTTGTTTGTGTGAGGCT
CATGTATCGCGGCTCGGTTGGTACTTTGCCAAGACCAATACGCTATATAC
ATACCAGGACGTTCGTCCTCTCCAAGCCTTTGTCAGAGAGCACGTTCTGA
TCCTCTCACTCCCGGTACCGTGGCCTTGTCTGACCGCGCTTCTCTGAACG
GCTGCGCAGATCCGTGTGGGTGGTCGGGGGCGGGGGGAACGACGGCGGCC
TGAGCGCGGCCGGCCGCGGCTTCTCCGCGCTCAACGCGGGCCTGCCGTCA
CAGTCTGGCCCGCTGATCGCCACCGTCGAGGTCCACCCCGAACCTCCATC
CGCCGCCGACTTCCCCGATCCGGCCTCCTGGGACGCGGCGACAGCGATGA
CGGCGTCTGCGACGGAGGAAAGAGCCGCGGGCACCGACGGTACCGCTGCC
GCTACTGCTACGGGTTCATCCTCTGGCGGCGTGTCTGGTGCCGGTTCGGC
GGAACCCGGCAGCAGGAGACTGGTCGTTGCCAAGGCACCCTCCGTCGCGG
GGGAGGGCTACCAGACCGGCAAGTGGCTCTGGGAGTGGCACATCGTGTCG
TGCGGCAACCGGGCCAGCGTGGGCGTGTGCCGCCGCGACGTCGCCGCCAT
AAGCGCCGCCGGCGTCCCGCTGCAAGGAGCCGGGGGCGGCGGCGCCGGTG
ACCGCGCGGACCTGTGGCTGTACCGCTCGGACGGGAACCTGTCGCACGGC
GGAGAATCGACGGAGCGGATGTGCCCGGGGGGCGGGTTCGACAGCGGCGA
CGTTGTCGGAGTGGAGCTGGACGCCGACGCTGGAACCCTGGCGTTCTTGA
AGAACGACGCCTACGTGGGCGGGCAGTTCAAGATCGACCGCCGGTCGGAG
GGAGACGACAGCGGCGACGGCGAGGGAGGCCGGGGGCTTTTCCCTTGCGT
GTCGCTCCGCGCGAGCGGGGACGCGGCCGTCCTGCTGGGGCTCAAGCAAG
GGGCCGCCACCATCACCTACCGCTCTCCGCCTTCCGAGAAAAAGAGCGGC
GGCCGCAGTTCACCGTCTTCGCCGCCGTCGCCGTCTGGGGAGCCGGAGGC
GGCAGCGGCGGTCACGGCGGACGCCGAGGCGGCAGCGGCGACAGCGGCGG
CCACCGTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11316:1029..2689-

>mRNA_Ecto-sp9_F_contig11316.1134.1 ID=mRNA_Ecto-sp9_F_contig11316.1134.1|Name=mRNA_Ecto-sp9_F_contig11316.1134.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11316:1029..2689- (Ectocarpus species9 EcSCA_722f female)
ATGATGGGGTCGTCGTGCAGATGATGGGGTCGTCGTGCAGATCCGTGTGG
GTGGTCGGGGGCGGGGGGAACGACGGCGGCCTGAGCGCGGCCGGCCGCGG
CTTCTCCGCGCTCAACGCGGGCCTGCCGTCACAGTCTGGCCCGCTGATCG
CCACCGTCGAGGTCCACCCCGAACCTCCATCCGCCGCCGACTTCCCCGAT
CCGGCCTCCTGGGACGCGGCGACAGCGATGACGGCGTCTGCGACGGAGGA
AAGAGCCGCGGGCACCGACGGTACCGCTGCCGCTACTGCTACGGGTTCAT
CCTCTGGCGGCGTGTCTGGTGCCGGTTCGGCGGAACCCGGCAGCAGGAGA
CTGGTCGTTGCCAAGGCACCCTCCGTCGCGGGGGAGGGCTACCAGACCGG
CAAGTGGCTCTGGGAGTGGCACATCGTGTCGTGCGGCAACCGGGCCAGCG
TGGGCGTGTGCCGCCGCGACGTCGCCGCCATAAGCGCCGCCGGCGTCCCG
CTGCAAGGAGCCGGGGGCGGCGGCGCCGGTGACCGCGCGGACCTGTGGCT
GTACCGCTCGGACGGGAACCTGTCGCACGGCGGAGAATCGACGGAGCGGA
TGTGCCCGGGGGGCGGGTTCGACAGCGGCGACGTTGTCGGAGTGGAGCTG
GACGCCGACGCTGGAACCCTGGCGTTCTTGAAGAACGACGCCTACGTGGG
CGGGCAGTTCAAGATCGACCGCCGGTCGGAGGGAGACGACAGCGGCGACG
GCGAGGGAGGCCGGGGGCTTTTCCCTTGCGTGTCGCTCCGCGCGAGCGGG
GACGCGGCCGTCCTGCTGGGGCTCAAGCAAGGGGCCGCCACCATCACCTA
CCGCTCTCCGCCTTCCGAGAAAAAGAGCGGCGGCCGCAGTTCACCGTCTT
CGCCGCCGTCGCCGTCTGGGGAGCCGGAGGCGGCAGCGGCGGTCACGGCG
GACGCCGAGGCGGCAGCGGCGACAGCGGCGGCCACCGTCGGGATCCGTGT
GGGTGGTCGGGGGCGGGGGGAACGACGGCGGCCTGAGCGCGGCCGGCCGC
GGCTTCTCCGCGCTCAACGCGGGCCTGCCGTCACAGTCTGGCCCGCTGAT
CGCCACCGTCGAGGTCCACCCCGAACCTCCATCCGCCGCCGACTTCCCCG
ATCCGGCCTCCTGGGACGCGGCGACAGCGATGACGGCGTCTGCGACGGAG
GAAAGAGCCGCGGGCACCGACGGTACCGCTGCCGCTACTGCTACGGGTTC
ATCCTCTGGCGGCGTGTCTGGTGCCGGTTCGGCGGAACCCGGCAGCAGGA
GACTGGTCGTTGCCAAGGCACCCTCCGTCGCGGGGGAGGGCTACCAGACC
GGCAAGTGGCTCTGGGAGTGGCACATCGTGTCGTGCGGCAACCGGGCCAG
CGTGGGCGTGTGCCGCCGCGACGTCGCCGCCATAAGCGCCGCCGGCGTCC
CGCTGCAAGGAGCCGGGGGCGGCGGCGCCGGTGACCGCGCGGACCTGTGG
CTGTACCGCTCGGACGGGAACCTGTCGCACGGCGGAGAATCGACGGAGCG
GATGTGCCCGGGGGGCGGGTTCGACAGCGGCGACGTTGTCGGAGTGGAGC
TGGACGCCGACGCTGGAACCCTGGCGTTCTTGAAGAACGACGCCTACGTG
GGCGGGCAGTTCAAGATCGACCGCCGGTCGGAGGGAGACGACAGCGGCGA
CGGCGAGGGAGGCCGGGGGCTTTTCCCTTGCGTGTCGCTCCGCGCGAGCG
GGGACGCGGCCGTCCTGCTGGGGCTCAAGCAAGGGGCCGCCACCATCACC
TACCGCTCTCCGCCTTCCGAGAAAAAGAGCGGCGGCCGCAGTTCACCGTC
TTCGCCGCCGTCGCCGTCTGGGGAGCCGGAGGCGGCAGCGGCGGTCACGG
CGGACGCCGAGGCGGCAGCGGCGACAGCGGCGGCCACCGTCGGG
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