mRNA_Ecto-sp9_F_contig11304.1127.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11304.1127.1
Unique NamemRNA_Ecto-sp9_F_contig11304.1127.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11304.1127.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11304contigEcto-sp9_F_contig11304:78..990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size913
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11304.1127.1prot_Ecto-sp9_F_contig11304.1127.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11304 320..880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928377.6209834-UTR-Ecto-sp9_F_contig11304:77..3191622928377.6209834-UTR-Ecto-sp9_F_contig11304:77..319Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11304 78..319 +
1692277851.2922199-UTR-Ecto-sp9_F_contig11304:77..3191692277851.2922199-UTR-Ecto-sp9_F_contig11304:77..319Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11304 78..319 +
1622928377.6422472-UTR-Ecto-sp9_F_contig11304:880..9901622928377.6422472-UTR-Ecto-sp9_F_contig11304:880..990Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11304 881..990 +
1692277851.3131287-UTR-Ecto-sp9_F_contig11304:880..9901692277851.3131287-UTR-Ecto-sp9_F_contig11304:880..990Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11304 881..990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928377.6318924-CDS-Ecto-sp9_F_contig11304:319..8801622928377.6318924-CDS-Ecto-sp9_F_contig11304:319..880Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11304 320..880 +
1692277851.3027067-CDS-Ecto-sp9_F_contig11304:319..8801692277851.3027067-CDS-Ecto-sp9_F_contig11304:319..880Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11304 320..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11304.1127.1

>prot_Ecto-sp9_F_contig11304.1127.1 ID=prot_Ecto-sp9_F_contig11304.1127.1|Name=mRNA_Ecto-sp9_F_contig11304.1127.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=187bp
MVMVCIACWLLIAVLPPLQCLRVRSCFEIHICGRQGHKGRWVLLLLLLLG
HLLLHGVTCMNVSLFSSTEEEEALRVIRRCALPAYSDFWCSLGICLSFPH
EFFFRGGFLVTCVTQPASGIIGSMTHCRLRRLDFFLEVSGCSTSSKTRYD
VVLDGVSELYSSGSSGGSSDVGMRYSCLVPGTLQMR*
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mRNA from alignment at Ecto-sp9_F_contig11304:78..990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11304.1127.1 ID=mRNA_Ecto-sp9_F_contig11304.1127.1|Name=mRNA_Ecto-sp9_F_contig11304.1127.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=913bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11304:78..990+ (Ectocarpus species9 EcSCA_722f female)
GTAGAGGTACGAGTTCCGTTTTGTTCCATAAAACATGAACCAGGAAACGC
CGAGGCGTCGTCCAATCGTTCATGTTGTCCATCTCGGGCTGCTGTCCTCC
CACACCTTGTATGGCATGAAGCATGTAGTCCGGAATTCGTAGTTCGGCGT
AAACGACGCCGGAACGCAAAGAAGACCTTCGGAAAAGACTTACCACCCCT
TTTCGGTGTCCGTGCAAGTCACTCTTGGCAGAGAGGTACTCTATGGTGAT
GGTGTGCATAGCGTGTTGGTTGCTCATCGCCGTCCTCCCCCCTCTTCAGT
GTCTTCGGGTTCGTTCTTGTTTTGAGATACATATCTGTGGGAGACAAGGA
CACAAGGGTAGGTGGGTGCTGCTGCTTCTCTTGCTTCTTGGGCATCTCCT
GTTGCATGGTGTTACCTGCATGAACGTTTCCCTCTTCTCATCGACGGAGG
AGGAAGAGGCCTTGCGCGTTATACGTCGGTGTGCGTTGCCGGCGTACTCA
GATTTTTGGTGCAGCTTAGGAATTTGTCTTTCCTTTCCTCATGAATTTTT
TTTCCGTGGCGGCTTTCTCGTGACTTGTGTGACACAGCCGGCGTCTGGTA
TTATAGGTAGCATGACACATTGTCGCCTGCGACGATTGGATTTTTTCCTG
GAAGTTTCGGGTTGTAGTACAAGTAGTAAAACGCGGTACGATGTTGTGTT
GGACGGCGTGAGCGAGTTATATTCCAGCGGCAGCAGCGGCGGGAGCAGTG
ATGTTGGCATGCGCTATTCGTGTCTGGTGCCTGGCACCTTGCAGATGCGC
TGATGCAAAAACGGCAGTACGGGCAAGAGAATGTCGACGGCGCGTGGTGT
ACTGTACAAAATTGTGAGGCACAGCAGCAGCAGTAGTTTAGCACAAAAGA
GTGTCATGCATGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11304:78..990+

>mRNA_Ecto-sp9_F_contig11304.1127.1 ID=mRNA_Ecto-sp9_F_contig11304.1127.1|Name=mRNA_Ecto-sp9_F_contig11304.1127.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11304:78..990+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGATGGTGTGCATAGCGTGTTGGTTGCTCATCGCCGTCCTCCCCCC
TCTTCAGTGTCTTCGGGTTCGTTCTTGTTTTGAGATACATATCTGTGGGA
GACAAGGACACAAGGGTAGGTGGGTGCTGCTGCTTCTCTTGCTTCTTGGG
CATCTCCTGTTGCATGGTGTTACCTGCATGAACGTTTCCCTCTTCTCATC
GACGGAGGAGGAAGAGGCCTTGCGCGTTATACGTCGGTGTGCGTTGCCGG
CGTACTCAGATTTTTGGTGCAGCTTAGGAATTTGTCTTTCCTTTCCTCAT
GAATTTTTTTTCCGTGGCGGCTTTCTCGTGACTTGTGTGACACAGCCGGC
GTCTGGTATTATAGGTAGCATGACACATTGTCGCCTGCGACGATTGGATT
TTTTCCTGGAAGTTTCGGGTTGTAGTACAAGTAGTAAAACGCGGTACGAT
GTTGTGTTGGACGGCGTGAGCGAGTTATATTCCAGCGGCAGCAGCGGCGG
GAGCAGTGATGTTGGCATGCGCTATTCGTGTCTGGTGCCTGGCACCTTGC
AGATGCGCTGAATGGTGATGGTGTGCATAGCGTGTTGGTTGCTCATCGCC
GTCCTCCCCCCTCTTCAGTGTCTTCGGGTTCGTTCTTGTTTTGAGATACA
TATCTGTGGGAGACAAGGACACAAGGGTAGGTGGGTGCTGCTGCTTCTCT
TGCTTCTTGGGCATCTCCTGTTGCATGGTGTTACCTGCATGAACGTTTCC
CTCTTCTCATCGACGGAGGAGGAAGAGGCCTTGCGCGTTATACGTCGGTG
TGCGTTGCCGGCGTACTCAGATTTTTGGTGCAGCTTAGGAATTTGTCTTT
CCTTTCCTCATGAATTTTTTTTCCGTGGCGGCTTTCTCGTGACTTGTGTG
ACACAGCCGGCGTCTGGTATTATAGGTAGCATGACACATTGTCGCCTGCG
ACGATTGGATTTTTTCCTGGAAGTTTCGGGTTGTAGTACAAGTAGTAAAA
CGCGGTACGATGTTGTGTTGGACGGCGTGAGCGAGTTATATTCCAGCGGC
AGCAGCGGCGGGAGCAGTGATGTTGGCATGCGCTATTCGTGTCTGGTGCC
TGGCACCTTGCAGATGCGCTGA
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