mRNA_Ecto-sp9_F_contig11302.1126.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11302.1126.1
Unique NamemRNA_Ecto-sp9_F_contig11302.1126.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11302.1126.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB4_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 2.330e-93
Identity = 167/194 (86.08%), Postives = 168/194 (86.60%), Query Frame = -3 
Query:    1 AESAAVTPTTCPPKPSDEKPLPLSHVKGDAHQVTVGVDTAAXXXXXXXXSTHEGPSGELLPGSHPLVVSGRRVWVVSPVVGWASVWAETGQSILTPAGAAAGNGDGEGNARDGGGKKRRPRKLGVEAAVAKVKAWPGLSQEDVDWLNPLLGVGKSDAAGGKKMKWPQKKVKVPPPSGKWKHPAKPPPPPAAITA 582
            AESA VTP TCPP PSDEKPLPLS VKGDAHQ TVGVDTAA        S  EG  GELLPGSHPLV SGRRVWVVSPVVGWASVWAETGQSILTPAGAAAGNGDGEGNARDGGGKKRRP KLGVEAA AKVKAWPGLSQEDVDWLNPLLGV KSDAAGGKKMKWPQK VK+PPPSGKWK P KP  PPAAITA
Sbjct: 2086 AESAPVTPATCPPNPSDEKPLPLSTVKGDAHQATVGVDTAAAAAGAAV-SAQEGHLGELLPGSHPLVASGRRVWVVSPVVGWASVWAETGQSILTPAGAAAGNGDGEGNARDGGGKKRRPGKLGVEAAAAKVKAWPGLSQEDVDWLNPLLGVCKSDAAGGKKMKWPQK-VKIPPPSGKWKQP-KPLLPPAAITA 2276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11302.1126.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UBC2.330e-9386.08core domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11302contigEcto-sp9_F_contig11302:2965..3548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11302.1126.1prot_Ecto-sp9_F_contig11302.1126.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11302 3004..3540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928377.5454166-UTR-Ecto-sp9_F_contig11302:2964..30031622928377.5454166-UTR-Ecto-sp9_F_contig11302:2964..3003Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11302 2965..3003 +
1692277851.2531505-UTR-Ecto-sp9_F_contig11302:2964..30031692277851.2531505-UTR-Ecto-sp9_F_contig11302:2964..3003Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11302 2965..3003 +
1622928377.5786061-UTR-Ecto-sp9_F_contig11302:3540..35481622928377.5786061-UTR-Ecto-sp9_F_contig11302:3540..3548Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11302 3541..3548 +
1692277851.2818296-UTR-Ecto-sp9_F_contig11302:3540..35481692277851.2818296-UTR-Ecto-sp9_F_contig11302:3540..3548Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11302 3541..3548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928377.5621476-CDS-Ecto-sp9_F_contig11302:3003..35401622928377.5621476-CDS-Ecto-sp9_F_contig11302:3003..3540Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11302 3004..3540 +
1692277851.2720397-CDS-Ecto-sp9_F_contig11302:3003..35401692277851.2720397-CDS-Ecto-sp9_F_contig11302:3003..3540Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11302 3004..3540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11302.1126.1

>prot_Ecto-sp9_F_contig11302.1126.1 ID=prot_Ecto-sp9_F_contig11302.1126.1|Name=mRNA_Ecto-sp9_F_contig11302.1126.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=179bp
MLPLAGRRRDLDLLLRPLHLLPAGGVRLAHAQQGVQPINVLLGEARPRLH
LRHGRFDAELPRPALLPAAVAGVALPVAVTRSGPRRGEDALSRLRPHACP
PDHRRHYPHPSPGHHQRVTAREELARGPLMCTSSRRCRRRCRCVYPDGDL
MSIPLHVAQRKRFFVRRLWWARCGCHRR*
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mRNA from alignment at Ecto-sp9_F_contig11302:2965..3548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11302.1126.1 ID=mRNA_Ecto-sp9_F_contig11302.1126.1|Name=mRNA_Ecto-sp9_F_contig11302.1126.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=584bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11302:2965..3548+ (Ectocarpus species9 EcSCA_722f female)
CGCCGTGATCGCCGCGGGGGGCGGGGGGGGCTTGGCGGGATGCTTCCACT
TGCCGGACGGCGGCGGGACCTTGACCTTCTTCTGCGGCCACTTCATCTTC
TTCCCGCCGGCGGCGTCCGACTTGCCCACGCCCAGCAGGGGGTTCAGCCA
ATCAACGTCCTCCTGGGAGAGGCCCGGCCACGCCTTCACCTTCGCCACGG
CCGCTTCGACGCCGAGCTTCCTCGGCCGGCGCTTCTTCCCGCCGCCGTCG
CGGGCGTTGCCCTCCCCGTCGCCGTTACCCGCAGCGGCCCCCGCCGGGGT
GAGGATGCTCTGTCCCGTCTCCGCCCACACGCTTGCCCACCCGACCACCG
GAGACACTACCCACACCCGTCGCCCGGACACCACCAGCGGGTGACTGCCA
GGGAGGAGCTCGCCCGAGGGCCCCTCATGTGTACTAGCAGCCGCCGCTGC
CGCCGCCGCTGCCGCTGTGTCTACCCCGACGGTGACCTGATGAGCATCCC
CCTTCACGTGGCTCAGAGGAAGAGGTTTTTCGTCCGACGGCTTTGGTGGG
CACGTTGTGGGTGTCACCGCCGCTGATTCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11302:2965..3548+

>mRNA_Ecto-sp9_F_contig11302.1126.1 ID=mRNA_Ecto-sp9_F_contig11302.1126.1|Name=mRNA_Ecto-sp9_F_contig11302.1126.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11302:2965..3548+ (Ectocarpus species9 EcSCA_722f female)
ATGCTTCCACTTGCCGGACGGCGGCGGGACCTTGACCTTCTTCTGCGGCC
ACTTCATCTTCTTCCCGCCGGCGGCGTCCGACTTGCCCACGCCCAGCAGG
GGGTTCAGCCAATCAACGTCCTCCTGGGAGAGGCCCGGCCACGCCTTCAC
CTTCGCCACGGCCGCTTCGACGCCGAGCTTCCTCGGCCGGCGCTTCTTCC
CGCCGCCGTCGCGGGCGTTGCCCTCCCCGTCGCCGTTACCCGCAGCGGCC
CCCGCCGGGGTGAGGATGCTCTGTCCCGTCTCCGCCCACACGCTTGCCCA
CCCGACCACCGGAGACACTACCCACACCCGTCGCCCGGACACCACCAGCG
GGTGACTGCCAGGGAGGAGCTCGCCCGAGGGCCCCTCATGTGTACTAGCA
GCCGCCGCTGCCGCCGCCGCTGCCGCTGTGTCTACCCCGACGGTGACCTG
ATGAGCATCCCCCTTCACGTGGCTCAGAGGAAGAGGTTTTTCGTCCGACG
GCTTTGGTGGGCACGTTGTGGGTGTCACCGCCGCTGAATGCTTCCACTTG
CCGGACGGCGGCGGGACCTTGACCTTCTTCTGCGGCCACTTCATCTTCTT
CCCGCCGGCGGCGTCCGACTTGCCCACGCCCAGCAGGGGGTTCAGCCAAT
CAACGTCCTCCTGGGAGAGGCCCGGCCACGCCTTCACCTTCGCCACGGCC
GCTTCGACGCCGAGCTTCCTCGGCCGGCGCTTCTTCCCGCCGCCGTCGCG
GGCGTTGCCCTCCCCGTCGCCGTTACCCGCAGCGGCCCCCGCCGGGGTGA
GGATGCTCTGTCCCGTCTCCGCCCACACGCTTGCCCACCCGACCACCGGA
GACACTACCCACACCCGTCGCCCGGACACCACCAGCGGGTGACTGCCAGG
GAGGAGCTCGCCCGAGGGCCCCTCATGTGTACTAGCAGCCGCCGCTGCCG
CCGCCGCTGCCGCTGTGTCTACCCCGACGGTGACCTGATGAGCATCCCCC
TTCACGTGGCTCAGAGGAAGAGGTTTTTCGTCCGACGGCTTTGGTGGGCA
CGTTGTGGGTGTCACCGCCGCTGA
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