mRNA_Ecto-sp9_F_contig113.1121.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig113.1121.1
Unique NamemRNA_Ecto-sp9_F_contig113.1121.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM1_9PHAE)

HSP 1 Score: 959 bits (2478), Expect = 0.000e+0
Identity = 512/572 (89.51%), Postives = 527/572 (92.13%), Query Frame = 1
Query:    1 MIKERRPLQFLGIDTATTIGSVCGHTSLGILALGYLETDALSLRELVVAGSSLNLFFSYYRTPPLWISIKWNLFFLAINAALIGVMWKEKEDAAEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGDSVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSAFNQDLNGSFDGSDDVHQGINSHDNDKSNSNTDKVETIQINXXXXXXXXXXXXXXXXLKSAVEDVFRENRGTIKEEGESGSGLNRTLQVTARPTDSLRGPEMVQVQKYGA 1716
            M KERRPLQF+GIDTATTIGSVCGH SLGIL+LGYLETDALSLRELVVAGS LNLFFSYYRTPPLWISIKWNLFFLAINAALIG MWKEK+DA EFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLE GGFVGSMAFNAFIQE+P+AS HT ARG ADA PAGGG  DGKDQADSVFIEGLVV DGGYKYGGKGVLDLVK VIF+MLRGDSVVGNVALSLVPDVVD  KDLG+MEC KNTVTATSDVVVYVWDQHALRAF+KRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGG+IN+TEKRKLQRYRETHGIALEEH F+LAERGWTEEEF+VGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKL+LLNFR+HAGIDAQEHILALGKQGWTVDDYEVGVKGMSS FNQD  GSFDGSDDV QGINSHDNDKS+SN DKVETIQ N      XXXXXXXXXX         RE  GTIKEEGES SGLNRTLQVTARPTDSLRG EMVQ  KYGA
Sbjct:  111 MTKERRPLQFVGIDTATTIGSVCGHISLGILSLGYLETDALSLRELVVAGSGLNLFFSYYRTPPLWISIKWNLFFLAINAALIGAMWKEKDDAEEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLEPGGFVGSMAFNAFIQESPLASYHTVARGAADALPAGGGAGDGKDQADSVFIEGLVVRDGGYKYGGKGVLDLVKGVIFHMLRGDSVVGNVALSLVPDVVDRSKDLGEMECAKNTVTATSDVVVYVWDQHALRAFLKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGKINQTEKRKLQRYRETHGIALEEHNFILAERGWTEEEFDVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLFLLNFRRHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSTFNQDF-GSFDGSDDVQQGINSHDNDKSSSNMDKVETIQ-NNNKDDDXXXXXXXXXXXXXXXXXXXREKCGTIKEEGESVSGLNRTLQVTARPTDSLRGREMVQ--KYGA 678          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD27_ECTSI)

HSP 1 Score: 882 bits (2280), Expect = 0.000e+0
Identity = 472/488 (96.72%), Postives = 477/488 (97.75%), Query Frame = 1
Query:  256 MWKEKEDAAEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGDSVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSAFNQDLNGSFDGSDDVHQGINSHDNDKSNSNTDKVETIQINXXXXXXXXXXXXXXXX-LKSAVEDVFRENRGTIKEEGESGSGLNRTLQVTARPTDSLRGPEMVQVQKYGA 1716
            MWKEKEDA EFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLE GGFVGSMAFNAFIQEAPVASSHTAARGTADA PAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGDSVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEIN+TEKRKLQRYRETHGIALEEHKFML+ERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELA+GEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSAFNQDLNGSFDGSDDVH GI+SHDNDKS+SNTDKVETIQIN XXXXXXXXXXXXX   LKSAVEDV RENRGTIKEE ESG GLNRTLQVTARPTDSLRGPEMVQVQKYGA
Sbjct:    1 MWKEKEDAEEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLEPGGFVGSMAFNAFIQEAPVASSHTAARGTADAWPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGDSVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINQTEKRKLQRYRETHGIALEEHKFMLSERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAQGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSAFNQDLNGSFDGSDDVHPGIHSHDNDKSDSNTDKVETIQINNXXXXXXXXXXXXXTIKLKSAVEDVCRENRGTIKEERESGRGLNRTLQVTARPTDSLRGPEMVQVQKYGA 488          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN16_ECTSI)

HSP 1 Score: 470 bits (1210), Expect = 7.720e-156
Identity = 251/472 (53.18%), Postives = 324/472 (68.64%), Query Frame = 1
Query:    1 MIKERRPLQFLGIDTATTIGSVCGHTSLGILALGYLETDALSLRELVVAGSSLNLFFSYYRTPPLWISIKWNLFFLAINAALIGVMWKEKEDAAEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEA--PV-ASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGG---KGVLDLVKDVIFNMLRGDSVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSAFNQ 1398
            M  ER+PL+F G++  TTIG +CGH S GI  L YLETD L+ R +V  G++L LFFSYYR PPL ISIKW    L +N+ L+ ++W E+ +A E   DPE++RI++++FMP DLNPVEF++LM  A RRV ++GNDI Q GRPHE+MFLIVEGTA+V+SEGE V  LE GGF+GSMAF  F QEA  PV  +     R T ++S             D V+I+ +++ +G   YGG   +    +VK+   + +R D ++G VA SLV DV+        ME +K TVTATSDVV Y WD H L AF+KRRPLIGA LQKA++EDF NKV QSRGH+ +YR+LL E+L+ G IN   + KL+RYRETH I+ E HK  L E+GWTEEE+ +GFQ   APR GS  F++YEALV REL+ GEV PE++  L  FR  A IDAQEH+LA+ KQGWT DDYE G KG +  +++
Sbjct:   87 MTTERQPLKFAGLNFTTTIGMLCGHASFGIATLVYLETDPLTTRVMVFTGATLGLFFSYYRHPPLIISIKWLTLTLILNSFLLAILWNERAEAEELNNDPEKSRIFEELFMPFDLNPVEFLRLMDLADRRVWMKGNDICQAGRPHEDMFLIVEGTAEVKSEGETVSHLEPGGFIGSMAFQRFTQEAEAPVDVTPEVVRRNTINSS-------------DFVYIDSIILENGSSVYGGGDGRSTRKIVKEAFLHFMRQDHIIGKVARSLVSDVMGMRVHEDDMERSKTTVTATSDVVTYAWDMHELHAFLKRRPLIGASLQKAMAEDFINKVYQSRGHEERYRLLLVESLDPGSINPIGREKLRRYRETHHISEEVHKGFLKEQGWTEEEYYMGFQQNKAPRDGSARFLEYEALVSRELSGGEVTPEARSNLRKFRSQAHIDAQEHLLAIQKQGWTADDYEAGEKGAAGHYDE 545          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD36_ECTSI)

HSP 1 Score: 464 bits (1194), Expect = 4.520e-151
Identity = 247/460 (53.70%), Postives = 312/460 (67.83%), Query Frame = 1
Query:    1 MIKERRPLQFLGIDTATTIGSVCGHTSLGILALGYLETDALSLRELVVAGSSLNLFFSYYRT--PPLWISIKWNLFFLAINAALIGVMWKEKEDAAEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGD-SVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGS-QHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVG 1368
            MIK+RRPL+FLGI T T  GS+CGH S  IL   YLETD L+LR LV++GS+LN+ F+ +R   PP+WI IKWN+ FLA+NAA++ ++  E+E+A E GKDPEQARI+++IFMP  L+PV F++LM  A+RRV+L+GND+NQ+GRPHEE+FLIVEGTA+V+SEG  VC L  GGFVGSMAFN FI+     S+  A                               G+GG  Y   G+     +V    LR   S+VG V  + V D     +D   ME + NT+TATSDVV YVWD H LR F+KRRP+IGA LQKAIS D +NKVNQSR HK  YR LL E L+GG +  TE+R LQRYR  H I++ EH+  L E GWTEE+FE GFQ   AP+  S ++F+KYEAL++ EL  GEVKPE++  L  FR  AGIDAQEH+LA+ KQGWT D+YE+G
Sbjct:   92 MIKDRRPLEFLGISTVTNAGSLCGHLSFAILTAAYLETDVLTLRVLVLSGSTLNIMFNMFRVVGPPVWIPIKWNVGFLALNAAMVWLLMNEREEAEELGKDPEQARIFREIFMPTQLSPVHFLRLMDVAERRVMLKGNDLNQEGRPHEEVFLIVEGTAEVKSEGVVVCHLASGGFVGSMAFNRFIKTPSPTSTKKA-------------------------------GEGGSSYREGGIFTQAWEVFLYQLRKQGSIVGEVGQTFVGDNTSRRQDKSGMERSSNTITATSDVVAYVWDMHVLREFVKRRPMIGASLQKAISVDLANKVNQSRDHKEHYRQLLAEALDGGRVTSTERRNLQRYRGGHRISVAEHRERLKEHGWTEEDFEAGFQELAAPKDMSKENFLKYEALLKSELDTGEVKPEARSNLRKFRSQAGIDAQEHLLAIEKQGWTADEYEIG 520          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD28_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 6.440e-141
Identity = 240/482 (49.79%), Postives = 307/482 (63.69%), Query Frame = 1
Query:    1 MIKERRPLQFLGIDTATTIGSVCGHTSLGILALGYLETDALSLRELVVAGSSLNLFFSYYRTPPLWISIKWNLFFLAINAALIGVMWKEKEDAAEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEA--PVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKY----------------GGKGVLDLVKDVIFNMLRGDSVVGNVALSLVPDVV-DGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSA 1389
            M+KERRPLQF+G  T TT  + CGH S  ILAL YLETD L+LR    +G  L++ F +YR  PLWI I WN  FL IN ++IG++ KEK +AA  G DPEQAR +Q++F PV+L PV+F++LM  A+RR+V +G  ++++G+P EE+FLIVEG A+V +E   V  LE   FVGSMAFN F+Q +  P  +S T     +                                                 GG GV    K+V  N+LR DS+VG++A S V D   D     G+ME +  TVTAT+DVV YVWD H LRAFIKRRPL GA LQ AIS D + KV+QSRG + +YR+LL E L+GG I   EK+KL RYR+ HGI+ EEH+ +L E  WT+EEFE GFQ GV PR GS+HF+ YEAL++RELAKG+V+ + +  L  FR  AGIDAQEH++AL KQGWT DDYEVG KG ++A
Sbjct:   25 MVKERRPLQFMGCQTTTTASNQCGHLSFVILALAYLETDVLALRASAASGIGLSILFQFYRAQPLWIPIGWNGVFLLINVSMIGLLLKEKSEAAHIGDDPEQARTFQEVFAPVELTPVDFVRLMDLAERRLVAKGTHLSEEGQPQEEVFLIVEGAAEVEAESAAVGHLEQKQFVGSMAFNRFMQASASPTTTSPTVPTDISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNVPGGGGVFKEAKEVALNVLRRDSIVGSMAQSFVADAEGDRRHGGGQMERSATTVTATTDVVAYVWDMHLLRAFIKRRPLAGAALQNAISADLTRKVDQSRGPEERYRLLLAEALDGGVITPIEKKKLTRYRDMHGISSEEHRELLKEHEWTKEEFEAGFQKGVTPRDGSKHFLNYEALLRRELAKGKVEDDGRQSLREFRTRAGIDAQEHLIALEKQGWTADDYEVGAKGKAAA 506          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD37_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 1.120e-133
Identity = 228/464 (49.14%), Postives = 300/464 (64.66%), Query Frame = 1
Query:    1 MIKERRPLQFLGID---TATTIGSVCGHTSLGILALGYLETDALSLRELVVAGSSLNLFFSYYRT--PPLWISIKWNLFFLAINAALIGVMWKEKEDAAEFGKDPEQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGD-SVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVK 1374
            MI+ERRP+ + GI+   T T  G++CGH S  +L L YLETD L LR LV  GS+LN+ F+ +R   PP+WI IKWN  FL +N  ++ ++  E+++A    +DPEQARIY DIF  V+L+PV+F++LM  A+RRVV +G ++   G PH+E+ LI+EGTA+V+SEG  V  +E GGF+GSMAF    ++  VA                                 L   DG Y Y   G+     + +   LR D SVVG VA ++V D     +D   +E + +TVTATSDVVVYVWDQHALR FIKRRP+IGA LQKAI+ D  NKV+QSR H   YR LL ETL+GG +  TE++ LQRYRE HGI+ +EH   L +  WTEEEFE GFQ GVA    +Q+F++YEAL+++ELAKG+VKP+++  L  FR   GIDAQEH++A+ KQGWT DDYE G K
Sbjct:  100 MIRERRPMAWCGIEALNTVTNAGALCGHFSFALLTLAYLETDVLKLRYLVACGSTLNVMFNLFRVVGPPVWIPIKWNAGFLLLNTIMVILLMNERQEADRLKEDPEQARIYHDIFESVNLSPVQFLRLMDVAERRVVPKGANLKDGGAPHKEVILIIEGTAEVKSEGVAVSHMEKGGFIGSMAFMRLSKKLSVAK--------------------------------LASDDGHYVYKDGGMFRKAWEAVLGQLRRDGSVVGEVAQAVVGDKTLKRQDTMGLERSMSTVTATSDVVVYVWDQHALREFIKRRPMIGAFLQKAITVDLVNKVDQSRDHHEHYRQLLAETLDGGRVTSTERKNLQRYREGHGISFDEHLDRLRDNKWTEEEFEAGFQMGVA----TQNFLEYEALLRKELAKGKVKPDARSNLRKFRSQVGIDAQEHLIAVEKQGWTADDYEAGAK 527          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD39_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 1.480e-91
Identity = 173/334 (51.80%), Postives = 215/334 (64.37%), Query Frame = 1
Query:  370 MGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGD-SVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVG 1368
            M  A+RRV+L+GND+ Q+GRPHEE+FLIVEG A+VRSEG  V  L+ GGFVGSMAFN FI++       T A   +D                          +G Y Y   G+       I   LR   SVVG V  S+V D     ++   +E +  TVTA+SDVVVYVWDQHALR FIKRRP+IGA LQKAIS D  NKV QSR HK  YR LL ETL+GG +  TE++ LQRYRE HGI++ EH   L E  WT +EF+ GF+ GVAP+  S++F+KYEAL+++ELAKGE+ PE+K  L  FR   GIDAQEH++A+ KQGWT D+YE G
Sbjct:    1 MDAAERRVMLKGNDLIQEGRPHEEVFLIVEGQAEVRSEGVAVSHLQSGGFVGSMAFNRFIKK-------TTANPHSDR-------------------------EGHYVYNDGGMFRKAWQAILAQLRKQGSVVGEVTQSIVGDQKSKRQEKSALERSTTTVTASSDVVVYVWDQHALREFIKRRPMIGACLQKAISVDLVNKVVQSRDHKEHYRQLLAETLDGGRVTSTERKNLQRYREGHGISMAEHFERLKENNWTHKEFQAGFREGVAPKDLSENFLKYEALLRKELAKGELNPEAKSNLRKFRSQKGIDAQEHLIAVEKQGWTADEYEAG 302          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW21_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 3.540e-86
Identity = 188/428 (43.93%), Postives = 232/428 (54.21%), Query Frame = 1
Query:  304 QARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGD-SVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQR-----------------------YRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGE-------------------------------------------------VKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVG 1368
            QARIY++IF  V L+PV F++LM  A+RRVVL+GND+ Q GRPHEEMFLIVEG A+VRSEG  V  L+ GGFVGSMAFN FI++       T +   AD                          +G Y Y   G+     + I   LR   SVVG V  S+V D     ++   +E +  TVTATSD+VVYVWDQHALR FIKRRP+IGA LQKAIS D  NKV QSR HK  YR LL ETL+GG +  TE++ LQR                       YRE HGI++ EH   L E  WT +EF+ GF+ GVAP+  S++F+KYEAL++ ELAKGE                                                 + PE+K  L  FR   GIDAQEH++A+ KQGWT D+YE G
Sbjct:   51 QARIYREIFERVQLSPVHFLRLMDAAERRVVLKGNDLIQDGRPHEEMFLIVEGQAEVRSEGVAVSHLQSGGFVGSMAFNRFIKK-------TTSNPHADR-------------------------EGHYVYKDGGMFRKAWEAILAQLRKQGSVVGEVTQSIVGDQKSKRQEKSALERSTTTVTATSDMVVYVWDQHALREFIKRRPMIGASLQKAISVDLVNKVVQSRDHKEHYRQLLAETLDGGRVTSTERKNLQRWVKGRKDGGKVSLLGGCTCDGRWYREGHGISMAEHFQRLKENNWTHKEFQAGFREGVAPKDLSENFLKYEALLRNELAKGEYHFCAFFFCCVFVIASSCCNEPPRSPSYRQFASCLVLVSFSPNGFDDDQLNPEAKSNLRKFRSQKGIDAQEHLIAVEKQGWTADEYEAG 446          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X4_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 3.930e-68
Identity = 141/292 (48.29%), Postives = 179/292 (61.30%), Query Frame = 1
Query:  379 AQRRVVLEGNDINQQGRPHEEMFLIVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTADASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLRGD-SVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEV 1251
            A+RRVV +G+++ + G PH+E+ LIVEGTA+V+SEG  V  +E GGF+GSMAF    ++   A                                 L   DG Y Y   G+     + I   LR D SVVG VA ++V D     +D   +E + +TVTATSDVVVYVWDQH LR FI RRP+IGA LQKAI+ D  NKV+QSR H   YR LL ETL+GG +  TE++ LQRYRE HGI+ EEH   L E  WTEEEFE GFQ GVA    +Q+F++YEAL+++ELAKG+V
Sbjct:    4 AERRVVPKGSNLKEGGAPHKEVLLIVEGTAEVKSEGVAVSHMEKGGFIGSMAFMRLSKKLSAAK--------------------------------LAADDGHYVYKDGGMFRKAWEAILGQLRRDGSVVGEVAQTVVGDKTLKRQDTMGLERSMSTVTATSDVVVYVWDQHELREFINRRPMIGACLQKAITVDLVNKVDQSRDHHEHYRQLLAETLDGGRVTSTERKNLQRYREGHGISFEEHLDRLKENNWTEEEFEAGFQTGVA----TQNFLEYEALLRKELAKGKV 259          
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S2_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.670e-42
Identity = 94/195 (48.21%), Postives = 118/195 (60.51%), Query Frame = 1
Query:  826 MECTKNTVTATSDVVVYVWDQHALRAFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINETEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSSAFNQDLNG 1410
            +E  + T+T    +VVYVWDQHALR FIKRRP+IGA LQKAIS D  NKV+QSR H   YR LL ETL+GG +  TE++ LQRYRE HGI++ EH   L E  WT +EF+ GF+ GVAP+   ++F+KYEAL++ ELAKGE                              GWT D YE G KG +     D++G
Sbjct:   11 LEIFRRTLTVHHPMVVYVWDQHALREFIKRRPMIGACLQKAISVDLVNKVDQSRDHNEHYRQLLAETLDGGRVTSTERKNLQRYREDHGISMAEHFERLKETNWTHKEFQAGFREGVAPKDLLENFLKYEALLRNELAKGE------------------------------GWTADKYEAG-KGNNWGDRYDVDG 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig113.1121.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
Cyclic0.000e+089.51nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic0.000e+096.72nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic7.720e-15653.18nucleotide-binding domain-containing protein n=2 T... [more]
Cyclic4.520e-15153.70nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic6.440e-14149.79nucleotide-binding domain-containing protein n=2 T... [more]
Cyclic1.120e-13349.14nucleotide-binding protein n=1 Tax=Ectocarpus sili... [more]
Cyclic1.480e-9151.80nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic3.540e-8643.93nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic3.930e-6848.29nucleotide-binding domain-containing protein n=1 T... [more]
Uncharacterized4.670e-4248.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig113contigEcto-sp9_F_contig113:22765..28665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score473.8
Seed ortholog evalue1.2e-130
Seed eggNOG ortholog2880.D7FN16
EggNOG free text desc.Cyclic nucleotide-monophosphate binding domain
EggNOG OGs2DQI1@1,2SD0D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclic nucleotide-binding-like
Ec32 orthologEc-11_000170.1
Exons8
Model size2036
Cds size1719
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.9097204-CDS-Ecto-sp9_F_contig113:22764..228951622928374.9097204-CDS-Ecto-sp9_F_contig113:22764..22895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 22765..22895 +
1692277850.8384655-CDS-Ecto-sp9_F_contig113:22764..228951692277850.8384655-CDS-Ecto-sp9_F_contig113:22764..22895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 22765..22895 +
1622928374.9233708-CDS-Ecto-sp9_F_contig113:24440..246151622928374.9233708-CDS-Ecto-sp9_F_contig113:24440..24615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 24441..24615 +
1692277850.849258-CDS-Ecto-sp9_F_contig113:24440..246151692277850.849258-CDS-Ecto-sp9_F_contig113:24440..24615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 24441..24615 +
1622928374.9356852-CDS-Ecto-sp9_F_contig113:24763..249281622928374.9356852-CDS-Ecto-sp9_F_contig113:24763..24928Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 24764..24928 +
1692277850.8580468-CDS-Ecto-sp9_F_contig113:24763..249281692277850.8580468-CDS-Ecto-sp9_F_contig113:24763..24928Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 24764..24928 +
1622928374.949191-CDS-Ecto-sp9_F_contig113:25202..255951622928374.949191-CDS-Ecto-sp9_F_contig113:25202..25595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 25203..25595 +
1692277850.8668206-CDS-Ecto-sp9_F_contig113:25202..255951692277850.8668206-CDS-Ecto-sp9_F_contig113:25202..25595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 25203..25595 +
1622928374.9643295-CDS-Ecto-sp9_F_contig113:26246..264551622928374.9643295-CDS-Ecto-sp9_F_contig113:26246..26455Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 26247..26455 +
1692277850.8754199-CDS-Ecto-sp9_F_contig113:26246..264551692277850.8754199-CDS-Ecto-sp9_F_contig113:26246..26455Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 26247..26455 +
1622928374.9758554-CDS-Ecto-sp9_F_contig113:26805..269801622928374.9758554-CDS-Ecto-sp9_F_contig113:26805..26980Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 26806..26980 +
1692277850.8844728-CDS-Ecto-sp9_F_contig113:26805..269801692277850.8844728-CDS-Ecto-sp9_F_contig113:26805..26980Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 26806..26980 +
1622928374.9924781-CDS-Ecto-sp9_F_contig113:27396..274861622928374.9924781-CDS-Ecto-sp9_F_contig113:27396..27486Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 27397..27486 +
1692277850.8978791-CDS-Ecto-sp9_F_contig113:27396..274861692277850.8978791-CDS-Ecto-sp9_F_contig113:27396..27486Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 27397..27486 +
1622928375.0081818-CDS-Ecto-sp9_F_contig113:27967..283481622928375.0081818-CDS-Ecto-sp9_F_contig113:27967..28348Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 27968..28348 +
1692277850.9051049-CDS-Ecto-sp9_F_contig113:27967..283481692277850.9051049-CDS-Ecto-sp9_F_contig113:27967..28348Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 27968..28348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928375.1604848-UTR-Ecto-sp9_F_contig113:28348..286651622928375.1604848-UTR-Ecto-sp9_F_contig113:28348..28665Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 28349..28665 +
1692277850.9123216-UTR-Ecto-sp9_F_contig113:28348..286651692277850.9123216-UTR-Ecto-sp9_F_contig113:28348..28665Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 28349..28665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig113.1121.1prot_Ecto-sp9_F_contig113.1121.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig113 22765..28348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig113.1121.1

>prot_Ecto-sp9_F_contig113.1121.1 ID=prot_Ecto-sp9_F_contig113.1121.1|Name=mRNA_Ecto-sp9_F_contig113.1121.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=573bp
MIKERRPLQFLGIDTATTIGSVCGHTSLGILALGYLETDALSLRELVVAG
SSLNLFFSYYRTPPLWISIKWNLFFLAINAALIGVMWKEKEDAAEFGKDP
EQARIYQDIFMPVDLNPVEFMQLMGQAQRRVVLEGNDINQQGRPHEEMFL
IVEGTADVRSEGEDVCRLELGGFVGSMAFNAFIQEAPVASSHTAARGTAD
ASPAGGGRSDGKDQADSVFIEGLVVGDGGYKYGGKGVLDLVKDVIFNMLR
GDSVVGNVALSLVPDVVDGPKDLGKMECTKNTVTATSDVVVYVWDQHALR
AFIKRRPLIGAGLQKAISEDFSNKVNQSRGHKTKYRMLLEETLEGGEINE
TEKRKLQRYRETHGIALEEHKFMLAERGWTEEEFEVGFQPGVAPRQGSQH
FVKYEALVQRELAKGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTV
DDYEVGVKGMSSAFNQDLNGSFDGSDDVHQGINSHDNDKSNSNTDKVETI
QINNSNDDDDNMDKADTIKLKSAVEDVFRENRGTIKEEGESGSGLNRTLQ
VTARPTDSLRGPEMVQVQKYGA*
back to top

mRNA from alignment at Ecto-sp9_F_contig113:22765..28665+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig113.1121.1 ID=mRNA_Ecto-sp9_F_contig113.1121.1|Name=mRNA_Ecto-sp9_F_contig113.1121.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5901bp|location=Sequence derived from alignment at Ecto-sp9_F_contig113:22765..28665+ (Ectocarpus species9 EcSCA_722f female)
ATGATAAAGGAGCGGCGTCCACTCCAGTTCCTCGGCATCGACACCGCGAC CACCATCGGCTCCGTGTGTGGGCACACTAGCTTGGGGATCCTTGCCTTGG GCTACCTCGAAACGGATGCCTTGAGCCTGCGGTGAGATTTTTTCGTGGTG GGTGGTTTTTCTGTCGTCTCATGTTTGAAAAGATCAAACGTCCACGGGGG GAATTTTTGTGGTCGCGAGGTACAATACAAAAATAAATGGTGTACTGACC GTAGTCGTTACCAAGGCGGTGGGTGGCCATGATGCGTCCGTCCCGACGCC GGGTTCTTGCTTGCTCAAGCCCACGCACATTGCGCACGGCAGGTCTGCTG CTTAAAAAAGAGTCAAGTATTATGTATGCACAACTGCTGTGTGTGTGCTA TGTATCGAAGTCGTGCCGATGGTTGATCAGCGCACGCACATTGTGGCAAT GCATACGTACGCAAGTACATGCGCGTAGTGTGTCCGATTCATGAGTCCTC GTGTGCTCAAGTAAATTGAGAGTTTTGTTGAGGATGGATGGGATGTGGTT GTTGTACACAGCATCGGAAACAAACAGCTCATCTTCTTTCGAGACTGCGA TTGTTTCATTTAAAACGTCATGTGTTACGACGAAGAATTTGGGTTGAAAA GGCGCGTCGTGCCGTGATATGACCCCACAATCAACAGCCCTCAATACTTT GCCCATTTAACATCAACCTTCTCACTACTGTATGACACAAACAAAAAAAA GACTGCCCAAACTTCCACCATACTTCTACAGTACGTGCCGAAAACACATG CAGGAGGCTGTCGGTTTTACCTATGATCGTTGTTGAGTTATTTTCTGCTC ACACACGCAAGTTGTAGTTGGAATTTCTTTGCAAAGAAGGTTTTCATCCT CCCAACGGGAAAAAAAAAGTGTCCGTTGATGGGTCGCATGGGGGCGACAC ACGCAGCATATTCAAAAACTCAACTTCAAATTTATCCGCCTCGGCCTCCT CCTCAATGTGAAACGTTTGGTTCGCCGGGATGCCAAACCAACCCAAGGCA CACGTATCTGGTTTGGCATATAGTAGCAAACAATAAGATGATAACCAGCT TCCTGGGTCCTCCTCTTGTGAAGCGTAGCCTGGGCCGGCGAATACCGGCC TATCGCTGCGCCCCGGCATTGTCGGGGAACGCGAGGTCAATGGTCCAACG ACTACAAGTACGGCATGCGGATACATGAGCACGCCCCCCTCCTCCCATCT TCATCTTCTTTCTACCTTGGTTCGATTCCGCCGCGTGCGTGCGGTGCTCT GCGGAACGGTGCAACGGTGAAATGTACGGCATTCCAGTACTGTACAGCAG TTTTAAGATCTTTACAAGTTCCCTCTCCACTCTCTTCTGCTCCACATGTT TCTTCTGCTGCTGCGTGAGCAACCAAGGCTCCCAGAGAGAGGGACCAAAA CACTCTTTCCCAAATCACTGACTGATCTTTCTCTTTTCCCCGGACCCGGA AATCAGCTTCAGGCACACATCGCGCACCCGGTCTTCACGTCGTACTGTAG GTCACCGCCCTAGCTTGCTGCATCAACCGGCCCTTGACGCCCTGCGGTCG GCCGCAATATTCTTGATACTTTGCACAGACTATGTATCTCTCTTGCACGT TGCATCATCCTCTTTTCCGTCTTCAGAGAACTAGTGGTCGCCGGATCGAG CCTGAACCTCTTCTTCAGCTATTACCGCACGCCACCGCTGTGGATCTCGA TCAAGTGGAACTTGTTCTTCCTGGCGATCAACGCGGCCCTGATAGGGGTA ATGTGGAAAGAGAAGGAAGACGCGGCGGAGTTTGGGAAGGACCCTGAACA GGTACAGCAGTAGGTGTGGCAACGCAGAGCTTTGCAGCAGTGCAACGGTT ACTTGGCACAGAGTAGTTTCCATGCCCCCCCCCCAGCGTTTTTCGATTCA CTTTCTAACGCTGGTGTTGCTCGTGGAATCCCGTCGTGTTTCGTCGCAGG CGAGAATTTACCAAGACATTTTCATGCCGGTCGACCTCAATCCTGTGGAG TTCATGCAGCTTATGGGCCAGGCACAGCGGCGAGTTGTGCTCGAGGGCAA CGATATCAACCAGCAAGGCAGACCGCACGAGGAGATGTTTCTGATCGTCG AGGGCACCGCCGATGTGGGTCAAGGGGCCATGAGGTTGGCCTTGCCGAGG CTTGGGGCGTAGCGTAGATCGCAGCGGTAGTCAGCCACGACAGTATATTG GAAATGGTGAATGTGCTCGTACGATGCAGATGTCAGTCGGTGCGGCACCT GAACCAGGCAGGTGATGATGGGCGGTGGTGTCAACCGTACTCTTCGTATT CATTTTCGCAAGAAAATGCTAGGAATAAAATGGGTCGCTGCTGCAACCAA TCGCTAACGTGAATGTTCTTGTTCAATAACAATAACAGGTAAGGTCGGAG GGTGAGGACGTGTGCCGCCTGGAGCTGGGTGGGTTTGTCGGCTCCATGGC CTTCAACGCTTTCATACAGGAGGCTCCGGTAGCGTCCTCTCACACCGCCG CCCGGGGTACCGCCGATGCGTCGCCGGCGGGAGGAGGGAGGAGCGACGGT AAGGATCAGGCAGACAGCGTGTTCATCGAGGGTCTCGTCGTCGGGGACGG TGGCTACAAGTACGGCGGGAAAGGGGTGCTTGACTTGGTGAAGGACGTGA TTTTCAACATGCTGAGGGGGGACTCTGTAGTTGGGAACGTCGCCCTGTCG CTCGTGCCCGACGTGGTGGACGGGCCGAAAGACTTGGGGAAGATGGAATG CACGAAGAACACCGTCACGGCTACTTCGGATGTGAGTTGTGACTCCTCCA GTGTTCGACGTGTAGGCGAATTTCTGACTGTTGTTTTTCCTTCGCTTGAA CCTATTACGGGGTTTACATACACATACGCAAGAAAATGCGGTAACTGCCA CATGAGCGAAGCGAAACGAGGATTGCATGGGAATGAAACGGCCACGACGA CCACCTCGAAACATCCTACCTGGCGTTTTTTTTCTACAGGGGGCACAGCA TCGAGTGTGTACACGCCTTGCAAATATAGCCTTACCCCCCCCTACCAACG GCGTGCCATTTTGGCCGTAACAGCGTTCTTTGTTGGGGCTTGGTAAGGGC TATTTACTGTAGTGTCTTTTGGAGTGACCACGAAAGGCCAGACAACATGT GGAAGCGACGGACATATCACAGACAACATTGGGTCACCCGTAGCGTGTCT CGTCGTGTCTTGATCTGTTGACGTTTTCATGTATCAATTAGTTGTCGCTA ACCTGCGAGGTGTTGCGTGTCAGGCATCCTACCGCCCCCGCAGCGGTTTC GGTACCCCCACACGCGAGACTAACCTGTTTTTCCCGGTGCAAGCACGTCG TACAATATATTTCGTAGGATCCACCTCATCCCGTCCCTCTGCCTCACCCT CTGCTGCTTCCTCGCACGGGCGCGGGCGCCAGGTGGTGGTGTACGTCTGG GACCAGCACGCCCTGCGCGCCTTCATCAAGCGCCGGCCTTTGATTGGCGC GGGTCTCCAGAAGGCCATCTCCGAGGACTTTTCGAACAAAGTCAACCAGT CCCGGGGACACAAGACCAAGTACCGGATGCTGCTCGAGGAGACCCTGGAA GGCGGCGAGATTAACGAGACCGAAAAGAGGAAGCTGCAAAGGTGATTGGG AGATGCGATGCGGCGACGTTGACCGCACGAACGTATTGAAGCTGTTGGTG GGCGTTGTGTTGTTGCTACGGCGCACACTACCGCTGTACTGCTGTGGTTC GCCCACTAGTGTGCGTGAACGTTCCCACGGCCGTGCTTGGGCGTTCTCTT GGGCGAAAATCACGAGAGGCGTGGCCGGGCTACCCAGCAGGAGGTCCCAC CTGTTTGACATAGAGATGAGTTTGTTTCGTTCCTGTTTTACCCATGATAC AAAAACATTTTGTATATTATGCTGTCTGTGTTTTTTCTTCTTTGTGTCAA CATCTCTGACGTCTCTTGGTTGGCGCCTTCACCGCGGCCAGGTACCGCGA AACGCACGGCATTGCGTTGGAGGAGCACAAGTTCATGCTCGCAGAACGCG GGTGGACAGAAGAAGAGTTCGAAGTCGGTTTCCAACCAGGCGTAGCACCC AGGCAGGGATCACAGCACTTTGTCAAGTACGAGGCCTTGGTACAGCGGGA GCTTGCCAAGGGAGAGGTGGGTGCGAATTTGTCGTTGTTGTTGTGCGCTG AAGCCTCGCCGGATAGACTCTTGGTACGGTGGGATTACCGATGGCTGGCG TCCTTGCCAGGATGTTGCGTACACGTCCCGTGTGCAGTCCTCGCCCATGC ATCAAATTGACACGGCATGGTCACAACCACGAAAACCGAATTTGTGCAAC GACTTTAATCGTCGCGACACACGTACATATGAACAATTGCTGTGACACCC GAAACAAGTAGGAAGAAGAAGGTAGCAAATGAATGGCACAGCAGTCACAC ACATGGTCTTTGATCGTCGCTACATCGCGCGATTTCGCGCAACGAGGCAA GTTCTAATCCTACCCCATCACCACGCGTGTCTGCTGCTGCCTGTGCGTCA CGTTCCTTGCCCTGTCGGTTGTCCTTCCTCAGGTGAAGCCTGAGTCAAAG CTCTACCTCTTGAACTTTCGCAAGCATGCCGGCATCGATGCCCAGGAGCA CATTCTCGCCCTCGGAAAGCAGGTACGCACGTCTGTACCCGTCTCTGTTG TTTGAGCACCTCTACGGTTTAGCCGCTCCGCTTCGCCGATGTTGCATACT GTCTGTCTGTGGATACCTTGACAGGCCCTTACCCACCCCTATCTTACACT TCATCTAGCCATACTGTGGACTAGCCGGAGACAGAAATAATCGCACGTCG GGGAACGCCAAAGACGACAAGGGAAGTTGCCCCCCTTTCCGACTTCAATA ACGCAGTGCACAAATTCATATTTTCTGCAATATTTCAAGACTGACCTAGC GCACTTCACGTCTCTTTTTCCCCCTCTTCCCCCACAATGTGCCCTCATGT CTCAACCAATCTCCGCATTCAACCCACACCGAAACGGACACGACATCCGT ACGCTTGGCCTATTTTTGTAGACCTTTTGTTCAAAGGAAAGAGTTGGATT CGGTTCTTGATGGTTTAAAAATTGATTGAAACGTGCTTTGTTTCCTAACG CAGGGCTGGACTGTGGATGACTACGAAGTCGGAGTGAAGGGCATGTCGTC CGCCTTCAACCAAGACTTGAACGGCTCGTTCGACGGCTCTGACGACGTCC ACCAAGGAATCAACAGCCACGACAACGACAAGAGCAACAGCAACACCGAC AAGGTCGAAACGATTCAAATCAACAACAGCAACGACGACGATGACAACAT GGACAAAGCTGACACAATCAAGCTGAAGAGTGCAGTTGAGGATGTTTTTC GGGAGAACCGCGGAACGATCAAGGAGGAGGGTGAAAGCGGGAGTGGCCTC AACAGGACCCTGCAGGTTACCGCGCGTCCTACCGACTCGTTGCGGGGCCC CGAAATGGTACAGGTACAGAAGTACGGCGCTTGAGGTACTGCACTCAATG CGGATGTGATGGCTGCGATGGTTCGCAGTCGCGTAGGTCTACGCGACTTA CATAGAGGACGGCGTTTCGAAAAAAGAGGACTGCTTTGTAAAAGAACGGC TCGGGTCTTTTGTCCACGACGACGCCGTTGTAAGGTGGTGCGAGTGTGTG GCGAGCGGTGGCGTAAGGCCCATCATGTATATGTGTGTATACCTCTTGGA GCCAAGGGAGGACGTTTGGCATATTTCCGTCGAATATGTTGGTGTTGCTG GCGGGCTTAGACGGGCCACGTTGCCCGGTAGTTTTTCAGACCAAAGGTGA T
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig113:22765..28665+

>mRNA_Ecto-sp9_F_contig113.1121.1 ID=mRNA_Ecto-sp9_F_contig113.1121.1|Name=mRNA_Ecto-sp9_F_contig113.1121.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3438bp|location=Sequence derived from alignment at Ecto-sp9_F_contig113:22765..28665+ (Ectocarpus species9 EcSCA_722f female)
ATGATAAAGGAGCGGCGTCCACTCCAGTTCCTCGGCATCGACACCGCGAC
CACCATCGGCTCCGTGTGTGGGCACACTAGCTTGGGGATCCTTGCCTTGG
GCTACCTCGAAACGGATGCCTTGAGCCTGCGATGATAAAGGAGCGGCGTC
CACTCCAGTTCCTCGGCATCGACACCGCGACCACCATCGGCTCCGTGTGT
GGGCACACTAGCTTGGGGATCCTTGCCTTGGGCTACCTCGAAACGGATGC
CTTGAGCCTGCGAGAACTAGTGGTCGCCGGATCGAGCCTGAACCTCTTCT
TCAGCTATTACCGCACGCCACCGCTGTGGATCTCGATCAAGTGGAACTTG
TTCTTCCTGGCGATCAACGCGGCCCTGATAGGGGTAATGTGGAAAGAGAA
GGAAGACGCGGCGGAGTTTGGGAAGGACCCTGAACAGAGAACTAGTGGTC
GCCGGATCGAGCCTGAACCTCTTCTTCAGCTATTACCGCACGCCACCGCT
GTGGATCTCGATCAAGTGGAACTTGTTCTTCCTGGCGATCAACGCGGCCC
TGATAGGGGTAATGTGGAAAGAGAAGGAAGACGCGGCGGAGTTTGGGAAG
GACCCTGAACAGGCGAGAATTTACCAAGACATTTTCATGCCGGTCGACCT
CAATCCTGTGGAGTTCATGCAGCTTATGGGCCAGGCACAGCGGCGAGTTG
TGCTCGAGGGCAACGATATCAACCAGCAAGGCAGACCGCACGAGGAGATG
TTTCTGATCGTCGAGGGCACCGCCGATGCGAGAATTTACCAAGACATTTT
CATGCCGGTCGACCTCAATCCTGTGGAGTTCATGCAGCTTATGGGCCAGG
CACAGCGGCGAGTTGTGCTCGAGGGCAACGATATCAACCAGCAAGGCAGA
CCGCACGAGGAGATGTTTCTGATCGTCGAGGGCACCGCCGATGTAAGGTC
GGAGGGTGAGGACGTGTGCCGCCTGGAGCTGGGTGGGTTTGTCGGCTCCA
TGGCCTTCAACGCTTTCATACAGGAGGCTCCGGTAGCGTCCTCTCACACC
GCCGCCCGGGGTACCGCCGATGCGTCGCCGGCGGGAGGAGGGAGGAGCGA
CGGTAAGGATCAGGCAGACAGCGTGTTCATCGAGGGTCTCGTCGTCGGGG
ACGGTGGCTACAAGTACGGCGGGAAAGGGGTGCTTGACTTGGTGAAGGAC
GTGATTTTCAACATGCTGAGGGGGGACTCTGTAGTTGGGAACGTCGCCCT
GTCGCTCGTGCCCGACGTGGTGGACGGGCCGAAAGACTTGGGGAAGATGG
AATGCACGAAGAACACCGTCACGGCTACTTCGGATGTAAGGTCGGAGGGT
GAGGACGTGTGCCGCCTGGAGCTGGGTGGGTTTGTCGGCTCCATGGCCTT
CAACGCTTTCATACAGGAGGCTCCGGTAGCGTCCTCTCACACCGCCGCCC
GGGGTACCGCCGATGCGTCGCCGGCGGGAGGAGGGAGGAGCGACGGTAAG
GATCAGGCAGACAGCGTGTTCATCGAGGGTCTCGTCGTCGGGGACGGTGG
CTACAAGTACGGCGGGAAAGGGGTGCTTGACTTGGTGAAGGACGTGATTT
TCAACATGCTGAGGGGGGACTCTGTAGTTGGGAACGTCGCCCTGTCGCTC
GTGCCCGACGTGGTGGACGGGCCGAAAGACTTGGGGAAGATGGAATGCAC
GAAGAACACCGTCACGGCTACTTCGGATGTGGTGGTGTACGTCTGGGACC
AGCACGCCCTGCGCGCCTTCATCAAGCGCCGGCCTTTGATTGGCGCGGGT
CTCCAGAAGGCCATCTCCGAGGACTTTTCGAACAAAGTCAACCAGTCCCG
GGGACACAAGACCAAGTACCGGATGCTGCTCGAGGAGACCCTGGAAGGCG
GCGAGATTAACGAGACCGAAAAGAGGAAGCTGCAAAGGTGGTGGTGTACG
TCTGGGACCAGCACGCCCTGCGCGCCTTCATCAAGCGCCGGCCTTTGATT
GGCGCGGGTCTCCAGAAGGCCATCTCCGAGGACTTTTCGAACAAAGTCAA
CCAGTCCCGGGGACACAAGACCAAGTACCGGATGCTGCTCGAGGAGACCC
TGGAAGGCGGCGAGATTAACGAGACCGAAAAGAGGAAGCTGCAAAGGTAC
CGCGAAACGCACGGCATTGCGTTGGAGGAGCACAAGTTCATGCTCGCAGA
ACGCGGGTGGACAGAAGAAGAGTTCGAAGTCGGTTTCCAACCAGGCGTAG
CACCCAGGCAGGGATCACAGCACTTTGTCAAGTACGAGGCCTTGGTACAG
CGGGAGCTTGCCAAGGGAGAGGTACCGCGAAACGCACGGCATTGCGTTGG
AGGAGCACAAGTTCATGCTCGCAGAACGCGGGTGGACAGAAGAAGAGTTC
GAAGTCGGTTTCCAACCAGGCGTAGCACCCAGGCAGGGATCACAGCACTT
TGTCAAGTACGAGGCCTTGGTACAGCGGGAGCTTGCCAAGGGAGAGGTGA
AGCCTGAGTCAAAGCTCTACCTCTTGAACTTTCGCAAGCATGCCGGCATC
GATGCCCAGGAGCACATTCTCGCCCTCGGAAAGCAGGTGAAGCCTGAGTC
AAAGCTCTACCTCTTGAACTTTCGCAAGCATGCCGGCATCGATGCCCAGG
AGCACATTCTCGCCCTCGGAAAGCAGGGCTGGACTGTGGATGACTACGAA
GTCGGAGTGAAGGGCATGTCGTCCGCCTTCAACCAAGACTTGAACGGCTC
GTTCGACGGCTCTGACGACGTCCACCAAGGAATCAACAGCCACGACAACG
ACAAGAGCAACAGCAACACCGACAAGGTCGAAACGATTCAAATCAACAAC
AGCAACGACGACGATGACAACATGGACAAAGCTGACACAATCAAGCTGAA
GAGTGCAGTTGAGGATGTTTTTCGGGAGAACCGCGGAACGATCAAGGAGG
AGGGTGAAAGCGGGAGTGGCCTCAACAGGACCCTGCAGGTTACCGCGCGT
CCTACCGACTCGTTGCGGGGCCCCGAAATGGTACAGGTACAGAAGTACGG
CGCTTGAGGCTGGACTGTGGATGACTACGAAGTCGGAGTGAAGGGCATGT
CGTCCGCCTTCAACCAAGACTTGAACGGCTCGTTCGACGGCTCTGACGAC
GTCCACCAAGGAATCAACAGCCACGACAACGACAAGAGCAACAGCAACAC
CGACAAGGTCGAAACGATTCAAATCAACAACAGCAACGACGACGATGACA
ACATGGACAAAGCTGACACAATCAAGCTGAAGAGTGCAGTTGAGGATGTT
TTTCGGGAGAACCGCGGAACGATCAAGGAGGAGGGTGAAAGCGGGAGTGG
CCTCAACAGGACCCTGCAGGTTACCGCGCGTCCTACCGACTCGTTGCGGG
GCCCCGAAATGGTACAGGTACAGAAGTACGGCGCTTGA
back to top