mRNA_Ecto-sp9_F_contig113.1119.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig113.1119.1
Unique NamemRNA_Ecto-sp9_F_contig113.1119.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig113.1119.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig113contigEcto-sp9_F_contig113:18912..20438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1319
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig113.1119.1prot_Ecto-sp9_F_contig113.1119.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig113 19072..19969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.1999109-UTR-Ecto-sp9_F_contig113:18911..190711622928374.1999109-UTR-Ecto-sp9_F_contig113:18911..19071Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 18912..19071 -
1692277850.562086-UTR-Ecto-sp9_F_contig113:18911..190711692277850.562086-UTR-Ecto-sp9_F_contig113:18911..19071Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 18912..19071 -
1622928374.2699609-UTR-Ecto-sp9_F_contig113:19969..204381622928374.2699609-UTR-Ecto-sp9_F_contig113:19969..20438Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 19970..20438 -
1692277850.590245-UTR-Ecto-sp9_F_contig113:19969..204381692277850.590245-UTR-Ecto-sp9_F_contig113:19969..20438Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 19970..20438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.245357-CDS-Ecto-sp9_F_contig113:19071..196291622928374.245357-CDS-Ecto-sp9_F_contig113:19071..19629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 19072..19629 -
1692277850.5719967-CDS-Ecto-sp9_F_contig113:19071..196291692277850.5719967-CDS-Ecto-sp9_F_contig113:19071..19629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 19072..19629 -
1622928374.2589037-CDS-Ecto-sp9_F_contig113:19837..199691622928374.2589037-CDS-Ecto-sp9_F_contig113:19837..19969Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 19838..19969 -
1692277850.580593-CDS-Ecto-sp9_F_contig113:19837..199691692277850.580593-CDS-Ecto-sp9_F_contig113:19837..19969Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 19838..19969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig113.1119.1

>prot_Ecto-sp9_F_contig113.1119.1 ID=prot_Ecto-sp9_F_contig113.1119.1|Name=mRNA_Ecto-sp9_F_contig113.1119.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=230bp
MLSYPNPYHHHHHEAVRSSGSCSRTKHILRLHAAESQAGQLLLQVSSSPP
VKNSSCLEEDPRTKNKTFRYGTQIQGKINSAPVVRYGRRDTITSINLPLE
NTATTTTITTTATATTLSRGAQHTRGFPEATPCSCWWRGGVHGLPPPRRR
LLNHEHHSNDGKHPRTHPILFAPTLAVCPFSRPEEATHYTEKTFRAILPE
PKRCVERGDTAVAGLSAFVRRQGPFECAK*
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mRNA from alignment at Ecto-sp9_F_contig113:18912..20438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig113.1119.1 ID=mRNA_Ecto-sp9_F_contig113.1119.1|Name=mRNA_Ecto-sp9_F_contig113.1119.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1527bp|location=Sequence derived from alignment at Ecto-sp9_F_contig113:18912..20438- (Ectocarpus species9 EcSCA_722f female)
CCCTCCTCCGCCAGCCAATGACCAATCCAATACCCTTAACCACACACACT
AGAACTAACATCCGAAAATCAGTTGGTTGGCTGTTCTCACTTCGATACCA
AGAGCAGTGATCATGTGCCAACCTCACAGGAAAAGAAGTAATTCGCTGCC
GCCTCACCACCCAGCACATAATAAGCAGTATGATAGTAGCGCACCCTTTA
CTTCACTCGCCGCACATAGCACTGCACGCATGTATCGTACGAACAAGAAC
ACATGACATAGTGACAGCCAGCCGGAAACAAGAACGAATGAACGAAGAAC
GCACACAATCGTGATGCAATTAACAATCAGTCTTGTGATACACGTCTACC
GACGGCATCAATCACCACCGTCGTTTCTCCTCTACCCTCTCCCCTCTCCC
CCCTGACTTCCCTCGTCCCTATTCCTATCGCAGCCCCGAAGGAGTTACGA
ATCATTGGGGCACCGCTGTATGCTATCCTATCCTAACCCCTACCACCATC
ATCACCATGAAGCCGTTCGTAGCTCCGGTAGTTGCTCGCGCACTAAACAT
ATACTGCGGCTGCACGCAGCAGAATCTCAAGCTGGACAGCTCCTACTACA
GGTAAGTAGTAGCCCTCCAGTCGTCCCTATTCCTATCGCAGCCCTGAAGG
AGTTACGAATCATTGGGGCACCGCTGTATGCTATCCTATCCTAACCCCTA
CCACCATCATAACCATGAAGCCGTTCGTAGCTCCGGTAGTTGCTCGCGCA
CTAAACATATACTGCGGCTGCACGCAGCAGAATCTCAAGCTGGACAGCTC
CTACTACAGGTAAGTAGTAGCCCTCCAGTAAAGAATTCTAGCTGCCTCGA
AGAAGACCCACGCACCAAAAATAAAACGTTCCGATATGGGACTCAAATTC
AAGGTAAAATCAACTCGGCGCCCGTCGTGAGATACGGGCGTCGAGATACC
ATCACCTCCATCAACCTGCCGCTAGAAAACACAGCAACAACGACAACAAT
AACAACAACAGCAACAGCAACAACACTTTCACGCGGTGCGCAACATACGC
GGGGCTTCCCTGAGGCGACCCCGTGCTCTTGTTGGTGGAGAGGGGGCGTG
CACGGCCTTCCCCCCCCCCGTAGAAGGCTACTCAACCACGAACACCACAG
TAATGATGGCAAACATCCTAGAACACACCCAATACTCTTCGCACCAACCC
TTGCTGTCTGTCCCTTCTCACGTCCAGAAGAAGCCACCCACTACACCGAA
AAAACATTCAGGGCGATTCTACCCGAACCGAAAAGGTGTGTGGAGCGTGG
AGACACTGCTGTAGCCGGGCTTAGCGCATTCGTTAGGAGACAGGGGCCAT
TCGAGTGCGCCAAATGAAACACGTTATCTAGACTACAGTACAGTAGTAGA
TAGGCAGGCACGTGTTGCGAACAACGAAGGCTCGCCAACACGAACACGTT
CTATTGCCTGTCTGTCCACACAAGGTTTTGATGTATCTACCCACCCCTCG
CCACCCCTTGCCACCCCATAGACGATG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig113:18912..20438-

>mRNA_Ecto-sp9_F_contig113.1119.1 ID=mRNA_Ecto-sp9_F_contig113.1119.1|Name=mRNA_Ecto-sp9_F_contig113.1119.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp9_F_contig113:18912..20438- (Ectocarpus species9 EcSCA_722f female)
ATGCTATCCTATCCTAACCCCTACCACCATCATCACCATGAAGCCGTTCG
TAGCTCCGGTAGTTGCTCGCGCACTAAACATATACTGCGGCTGCACGCAG
CAGAATCTCAAGCTGGACAGCTCCTACTACAGATGCTATCCTATCCTAAC
CCCTACCACCATCATCACCATGAAGCCGTTCGTAGCTCCGGTAGTTGCTC
GCGCACTAAACATATACTGCGGCTGCACGCAGCAGAATCTCAAGCTGGAC
AGCTCCTACTACAGGTAAGTAGTAGCCCTCCAGTAAAGAATTCTAGCTGC
CTCGAAGAAGACCCACGCACCAAAAATAAAACGTTCCGATATGGGACTCA
AATTCAAGGTAAAATCAACTCGGCGCCCGTCGTGAGATACGGGCGTCGAG
ATACCATCACCTCCATCAACCTGCCGCTAGAAAACACAGCAACAACGACA
ACAATAACAACAACAGCAACAGCAACAACACTTTCACGCGGTGCGCAACA
TACGCGGGGCTTCCCTGAGGCGACCCCGTGCTCTTGTTGGTGGAGAGGGG
GCGTGCACGGCCTTCCCCCCCCCCGTAGAAGGCTACTCAACCACGAACAC
CACAGTAATGATGGCAAACATCCTAGAACACACCCAATACTCTTCGCACC
AACCCTTGCTGTCTGTCCCTTCTCACGTCCAGAAGAAGCCACCCACTACA
CCGAAAAAACATTCAGGGCGATTCTACCCGAACCGAAAAGGTGTGTGGAG
CGTGGAGACACTGCTGTAGCCGGGCTTAGCGCATTCGTTAGGAGACAGGG
GCCATTCGAGTGCGCCAAATGAGTAAGTAGTAGCCCTCCAGTAAAGAATT
CTAGCTGCCTCGAAGAAGACCCACGCACCAAAAATAAAACGTTCCGATAT
GGGACTCAAATTCAAGGTAAAATCAACTCGGCGCCCGTCGTGAGATACGG
GCGTCGAGATACCATCACCTCCATCAACCTGCCGCTAGAAAACACAGCAA
CAACGACAACAATAACAACAACAGCAACAGCAACAACACTTTCACGCGGT
GCGCAACATACGCGGGGCTTCCCTGAGGCGACCCCGTGCTCTTGTTGGTG
GAGAGGGGGCGTGCACGGCCTTCCCCCCCCCCGTAGAAGGCTACTCAACC
ACGAACACCACAGTAATGATGGCAAACATCCTAGAACACACCCAATACTC
TTCGCACCAACCCTTGCTGTCTGTCCCTTCTCACGTCCAGAAGAAGCCAC
CCACTACACCGAAAAAACATTCAGGGCGATTCTACCCGAACCGAAAAGGT
GTGTGGAGCGTGGAGACACTGCTGTAGCCGGGCTTAGCGCATTCGTTAGG
AGACAGGGGCCATTCGAGTGCGCCAAATGA
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