mRNA_Ecto-sp9_F_contig113.1116.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig113.1116.1
Unique NamemRNA_Ecto-sp9_F_contig113.1116.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig113.1116.1 vs.
Match: Protein-serine/threonine (phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD30_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.370e-58
Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = -2 
Query:    2 MAMRRPKKLTRPRGSSSASRLGPGMKTMDLRFSPAGGWGLAGVSSGSRSTTGPAALPPRWVISWEVGPGATVDRGLKLAKLHCVGVDKDGGPGDTKEQFIV 304
            MAMRRPKKLTRP GSSSASRLGPGMKTMDLRFSPAGGWGLAGVSSGSR TTGPAALPPRWVISWEVGPGATVDRGLKLAKLHCVGVDKDGGPGDTKEQFIV
Sbjct:    1 MAMRRPKKLTRPTGSSSASRLGPGMKTMDLRFSPAGGWGLAGVSSGSRGTTGPAALPPRWVISWEVGPGATVDRGLKLAKLHCVGVDKDGGPGDTKEQFIV 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig113.1116.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein-serine/threonine1.370e-5898.02phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig113contigEcto-sp9_F_contig113:1769..2169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.3109176-UTR-Ecto-sp9_F_contig113:1768..17731622928374.3109176-UTR-Ecto-sp9_F_contig113:1768..1773Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 1769..1773 +
1692277850.602109-UTR-Ecto-sp9_F_contig113:1768..17731692277850.602109-UTR-Ecto-sp9_F_contig113:1768..1773Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig113 1769..1773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.3237832-CDS-Ecto-sp9_F_contig113:1773..21691622928374.3237832-CDS-Ecto-sp9_F_contig113:1773..2169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 1774..2169 +
1692277850.6122248-CDS-Ecto-sp9_F_contig113:1773..21691692277850.6122248-CDS-Ecto-sp9_F_contig113:1773..2169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig113 1774..2169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig113.1116.1prot_Ecto-sp9_F_contig113.1116.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig113 1774..2169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig113.1116.1

>prot_Ecto-sp9_F_contig113.1116.1 ID=prot_Ecto-sp9_F_contig113.1116.1|Name=mRNA_Ecto-sp9_F_contig113.1116.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=132bp
MNCSFVSPGPPSLSTPTQCSFASFSPRSTVAPGPTSHDITQRGGSAAGPV
VLLLPLLTPARPHPPAGEKRRSIVFMPGPRREAEEEPLGRVSFFGRRMAM
VYRDVGPFVCPRLLRAHCCCECPAVSWQCWRS
back to top

mRNA from alignment at Ecto-sp9_F_contig113:1769..2169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig113.1116.1 ID=mRNA_Ecto-sp9_F_contig113.1116.1|Name=mRNA_Ecto-sp9_F_contig113.1116.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=401bp|location=Sequence derived from alignment at Ecto-sp9_F_contig113:1769..2169+ (Ectocarpus species9 EcSCA_722f female)
CCACGATGAACTGCTCTTTCGTATCGCCTGGGCCCCCATCCTTGTCCACG
CCCACGCAGTGCAGCTTCGCCAGCTTCAGCCCACGGTCCACCGTGGCTCC
CGGCCCAACCTCCCACGATATCACCCAGCGAGGAGGTAGCGCCGCGGGAC
CCGTCGTGCTCCTGCTGCCGCTGCTAACTCCTGCTAGGCCCCACCCTCCC
GCAGGTGAAAAGCGCAGGTCCATCGTCTTCATGCCGGGCCCAAGGCGGGA
GGCGGAAGAGGAGCCCCTCGGACGGGTGAGCTTCTTCGGCCGCCGCATGG
CCATGGTTTACCGAGATGTGGGCCCGTTCGTCTGTCCTCGTCTGCTCAGG
GCGCACTGCTGCTGTGAGTGTCCAGCTGTCAGCTGGCAATGTTGGAGGTC
A
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig113:1769..2169+

>mRNA_Ecto-sp9_F_contig113.1116.1 ID=mRNA_Ecto-sp9_F_contig113.1116.1|Name=mRNA_Ecto-sp9_F_contig113.1116.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp9_F_contig113:1769..2169+ (Ectocarpus species9 EcSCA_722f female)
ATGAACTGCTCTTTCGTATCGCCTGGGCCCCCATCCTTGTCCACGCCCAC
GCAGTGCAGCTTCGCCAGCTTCAGCCCACGGTCCACCGTGGCTCCCGGCC
CAACCTCCCACGATATCACCCAGCGAGGAGGTAGCGCCGCGGGACCCGTC
GTGCTCCTGCTGCCGCTGCTAACTCCTGCTAGGCCCCACCCTCCCGCAGG
TGAAAAGCGCAGGTCCATCGTCTTCATGCCGGGCCCAAGGCGGGAGGCGG
AAGAGGAGCCCCTCGGACGGGTGAGCTTCTTCGGCCGCCGCATGGCCATG
GTTTACCGAGATGTGGGCCCGTTCGTCTGTCCTCGTCTGCTCAGGGCGCA
CTGCTGCTGTGAGTGTCCAGCTGTCAGCTGGCAATGTTGGAGGTCAATGA
ACTGCTCTTTCGTATCGCCTGGGCCCCCATCCTTGTCCACGCCCACGCAG
TGCAGCTTCGCCAGCTTCAGCCCACGGTCCACCGTGGCTCCCGGCCCAAC
CTCCCACGATATCACCCAGCGAGGAGGTAGCGCCGCGGGACCCGTCGTGC
TCCTGCTGCCGCTGCTAACTCCTGCTAGGCCCCACCCTCCCGCAGGTGAA
AAGCGCAGGTCCATCGTCTTCATGCCGGGCCCAAGGCGGGAGGCGGAAGA
GGAGCCCCTCGGACGGGTGAGCTTCTTCGGCCGCCGCATGGCCATGGTTT
ACCGAGATGTGGGCCCGTTCGTCTGTCCTCGTCTGCTCAGGGCGCACTGC
TGCTGTGAGTGTCCAGCTGTCAGCTGGCAATGTTGGAGGTCA
back to top