mRNA_Ecto-sp9_F_contig11299.1115.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11299.1115.1
Unique NamemRNA_Ecto-sp9_F_contig11299.1115.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU89_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.410e-64
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 2 
Query:   23 MAQRLWRALGGQQNPLPSANPKNWPEPTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPLL 355
            MAQRLWRAL GQQNPLPSANPKNWPEPTIEDVLERPTRIVQ+NKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQ IPAITSTFGYPILLLPLL
Sbjct:    1 MAQRLWRALRGQQNPLPSANPKNWPEPTIEDVLERPTRIVQINKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQAIPAITSTFGYPILLLPLL 111
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BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: PhoLip_ATPase_N (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFD1_9ARCH)

HSP 1 Score: 125 bits (314), Expect = 2.030e-31
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 2 
Query:   68 LPSANPKNWPEPTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPLL 355
            LP ANP+ WP     ++ ERP RIV++  PQ Y FC+NF+KTSKYEVW F+PKFL  EF+PR KIAN YFL++S +Q IPAI++T GYP  L+PLL
Sbjct:   46 LPHANPRGWPNSGPAEISERPKRIVKIGTPQVYWFCNNFVKTSKYEVWDFLPKFLLEEFNPRTKIANCYFLMISGLQCIPAISNTNGYPTTLIPLL 141
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BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.890e-26
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 2 
Query:   23 MAQRLWRAL--GGQQNPLPSANPKNWP--EPTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPL 352
            ++QRL R     G  +  P +NPK W   +   ED+  RP RIV +N  Q++ FC NF+KTSKYE +SF+P FL  EF+PR KIAN+YFL ++ +QVIP+IT+TFG P +LLPL
Sbjct:   42 LSQRLHRRRRSSGSHHRKPKSNPKGWHRGKHRAEDLEARPNRIVNINAEQDFEFCTNFVKTSKYEPYSFLPLFLWEEFNPRTKIANVYFLFIAVLQVIPSITNTFGIPTMLLPL 155
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BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLE4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.180e-24
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2 
Query:   83 PKNWPEPTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPL 352
            PKNWP PT  D+  RP R++ +  PQ++SFC+N I+T KYE ++F PKFL  EF+P++KIAN YFL ++ MQ I  I++T GYP +L+PL
Sbjct:    7 PKNWPSPTQADLDARPQRLINIGTPQDFSFCNNSIRTYKYEWYTFPPKFLLEEFNPKQKIANCYFLTIAGMQCIGPISNTNGYPTVLIPL 96
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: PhoLip_ATPase_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC88_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.310e-23
Identity = 49/96 (51.04%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:   71 PSANPKNWPE--PTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPL 352
            P +NP  W E   T  DV +RP R+V +N  QE  F  N ++T+KYE + F+P+FL  EF+P  KIAN+YFL ++++QVIP+IT+TFG P++LLPL
Sbjct:   64 PPSNPPGWSEGKSTAYDVAQRPNRVVVINAEQETEFASNMVRTAKYEYYDFLPRFLWEEFNPASKIANVYFLFIAALQVIPSITNTFGIPLMLLPL 159
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.800e-23
Identity = 49/96 (51.04%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:   71 PSANPKNWPE--PTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPL 352
            P +NP  W E   T  DV +RP R+V +N  QE  F  N ++T+KYE + F+P+FL  EF+P  KIAN+YFL ++++QVIP+IT+TFG P++LLPL
Sbjct:   64 PPSNPPGWSEGKSTAYDVAQRPNRVVVINAEQETEFASNMVRTAKYEYYDFLPRFLWEEFNPATKIANVYFLFIAALQVIPSITNTFGIPLMLLPL 159
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Phospholipid-transporting (ATPase (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVW8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.560e-21
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:   71 PSANPKNWPE-PTIEDVLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPL 352
            P +NP  WP  P  E+++ RPTRIV +  PQ + FC NFI+TSK+ + +F+PKFL  EFH R+K+AN+YF  +S +Q +  I++T G P L+LPL
Sbjct:   26 PWSNPAGWPHNPDQEELMLRPTRIVVLGGPQRFRFCSNFIRTSKFTLLTFLPKFLLEEFHWRRKMANVYFFCISLLQTVKEISNTHGIPSLILPL 120
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.750e-17
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2 
Query:   23 MAQRLWRALGGQQNPLPSANPKNWPEPTIEDVLERPTRI 139
            MAQRLWR L G+QNPLPSANPKNWPEPTIEDVLERPTRI
Sbjct:    1 MAQRLWRTLRGRQNPLPSANPKNWPEPTIEDVLERPTRI 39
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BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP09_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.410e-11
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:  134 RIVQVNKPQ---EYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITSTFGYPILLLPL 352
            R V VN P    E  +CDNFI TSKY + SF+PKFL   F   +K+ANLYFL + +MQ +PAI++T G P  L PL
Sbjct:   12 RAVHVNAPARNAELGYCDNFIVTSKYTLVSFVPKFL---FETFRKLANLYFLAICTMQCVPAISNTNGQPSTLPPL 84
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4TKJ8_9TREM)

HSP 1 Score: 67.8 bits (164), Expect = 8.410e-11
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  116 VLERPTRIVQVNKPQEYSFCDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITST 322
             LE  +RIV +N+ Q  +FC N I TSKY VW+F+PKFL  +F   ++ AN++FL+++ +Q IP ++ T
Sbjct:    9 TLETGSRIVYINERQPITFCKNAISTSKYSVWTFLPKFLCEQF---RRYANVFFLVIALLQQIPGVSPT 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11299.1115.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Phospholipid-transporting2.410e-6497.30ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
PhoLip_ATPase_N2.030e-3160.42domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
Phospholipid-transporting1.890e-2651.75ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Phospholipid-transporting5.180e-2453.33ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID... [more]
PhoLip_ATPase_N1.310e-2351.04domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.800e-2351.04protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Phospholipid-transporting2.560e-2149.47ATPase (Fragment) n=2 Tax=Phaeomonas parva TaxID=1... [more]
Uncharacterized2.750e-1792.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.410e-1152.63protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Phospholipid-transporting8.410e-1144.93ATPase n=1 Tax=Paragonimus heterotremus TaxID=1002... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11299contigEcto-sp9_F_contig11299:900..2891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.9
Seed ortholog evalue1.5e-55
Seed eggNOG ortholog2880.D7FU89
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size356
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11299.1115.1prot_Ecto-sp9_F_contig11299.1115.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11299 900..2869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.11018-CDS-Ecto-sp9_F_contig11299:899..9561622928374.11018-CDS-Ecto-sp9_F_contig11299:899..956Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 900..956 -
1692277850.5197887-CDS-Ecto-sp9_F_contig11299:899..9561692277850.5197887-CDS-Ecto-sp9_F_contig11299:899..956Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 900..956 -
1622928374.1210494-CDS-Ecto-sp9_F_contig11299:1581..16891622928374.1210494-CDS-Ecto-sp9_F_contig11299:1581..1689Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 1582..1689 -
1692277850.5288465-CDS-Ecto-sp9_F_contig11299:1581..16891692277850.5288465-CDS-Ecto-sp9_F_contig11299:1581..1689Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 1582..1689 -
1622928374.132811-CDS-Ecto-sp9_F_contig11299:2109..21641622928374.132811-CDS-Ecto-sp9_F_contig11299:2109..2164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 2110..2164 -
1692277850.5363133-CDS-Ecto-sp9_F_contig11299:2109..21641692277850.5363133-CDS-Ecto-sp9_F_contig11299:2109..2164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 2110..2164 -
1622928374.145208-CDS-Ecto-sp9_F_contig11299:2756..28691622928374.145208-CDS-Ecto-sp9_F_contig11299:2756..2869Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 2757..2869 -
1692277850.5439649-CDS-Ecto-sp9_F_contig11299:2756..28691692277850.5439649-CDS-Ecto-sp9_F_contig11299:2756..2869Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11299 2757..2869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.157687-UTR-Ecto-sp9_F_contig11299:2869..28911622928374.157687-UTR-Ecto-sp9_F_contig11299:2869..2891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11299 2870..2891 -
1692277850.5524101-UTR-Ecto-sp9_F_contig11299:2869..28911692277850.5524101-UTR-Ecto-sp9_F_contig11299:2869..2891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11299 2870..2891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11299.1115.1

>prot_Ecto-sp9_F_contig11299.1115.1 ID=prot_Ecto-sp9_F_contig11299.1115.1|Name=mRNA_Ecto-sp9_F_contig11299.1115.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=111bp
MAQRLWRALGGQQNPLPSANPKNWPEPTIEDVLERPTRIVQVNKPQEYSF
CDNFIKTSKYEVWSFMPKFLAVEFHPRKKIANLYFLIVSSMQVIPAITST
FGYPILLLPLL
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mRNA from alignment at Ecto-sp9_F_contig11299:900..2891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11299.1115.1 ID=mRNA_Ecto-sp9_F_contig11299.1115.1|Name=mRNA_Ecto-sp9_F_contig11299.1115.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1992bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11299:900..2891- (Ectocarpus species9 EcSCA_722f female)
GCGGAGAAAGCAGCAGGGAAACATGGCGCAGCGGCTGTGGAGGGCCCTCG
GAGGGCAACAGAACCCCTTGCCGTCGGCAAACCCTAAGAACTGGCCCGAG
CCTACCATCGAGGATGTCCTAGAGCGGCCGACCAGGTGACCGTAGAGTAC
ATAGTGATGTGCGGCGTGATGTTCGGCGATACCGACAGAATCTATCGCAA
GATAATGCAGAAATCGGGTTCGGCGACACTGTCAAAAAATCTCTCGTAAT
ATAAAAGCAGAAACTTGATTCGGCGATACTGTCTGAATCTCTGGTAGGAT
GATACAGAAGTGGGATTCGGCGGTGATATCAATATGAGCCTTTGAGGTTA
TGGTCGGCCGAACGGAGTTGATACGACAGAAATAGGCCCGAACCCATCCA
GCCGGACCGTCTAGGCTCACACACGACAAGCGATTGCCTTGTTTATGTTT
TTGTCCGTTTGTGTTCTTTCACTGAAACAAGGGTGGAAGAAAGTAAGTGA
ATTTAATCACAAAGAAACACGCCTACCGAGTCAAGCCGAGGACTCTCGCC
GTTTTGCAGTGGCGGCGGAAGGCAAGAACCCTCCGCCATGCAAGCGCGTT
AGTCGAGGTTGGCCTATGTACGTATACGCTCTTAATGGGGCTACCGCTGA
CGCTGACGTCCCTTCATGTGCTGTGGTTGCTGCTGCTGCTGCTGCCGTCG
CCCCACCGTGGCCATGCCATGTCGCAGGATCGTGCAAGTCAACAAGCCTC
AGGAGTATTCCTTCTGCGACAACTTCATCAAGGTGCGCGCGGGCTGACTA
ACTAACACGTCCTCGCCGCTTCTTTTGGTTGTTGAGTTTTTCTTCCATCA
ACCAGCCGGACGGGAATCTAAAGATGCGCGCCATGTTTTTTCTCTTGGCT
TCTGCCTCTCCTGCACGGTGGTTCTTTTCCGTGCACGATTTCCGTTCAAT
ATATACATCGGCCAAACCCCTTCTCGAAGCAGGACTACGCTCACGCACCC
CATTCCTATGTCGTGGTACACTCCCTCCCCTTGCGCCCTCGGCGCTCCGC
GCTTGGTGATGTGAGAGCCTGGTCCGGTGACAACCCGGCGTGCTCCGTCC
CGGCTTCGTCGGGATGCGAGGTCAATGGTCTAACGAGATACGGCATGCAT
GGTTATGAACACCCCCCCCGCCCCGCCTTTTCTGTTTTTTTTACCCGACA
AGACTTCGAAGTACGAAGTGTGGTCGTTCATGCCCAAGTTCCTGGCGGTG
GAGTTCCACCCCAGGAAGAAGATCGCCAACCTTTACTTTCTCATCGTCAG
CTCTATGCAGGTACGCGTCGTACGCCACGCCAGCCCGTTGCTGCTACTAC
CGCTGTGTGTTCTGGTTTTGTCGTCCGGCCGCTGCTGCTGTACGGTGATT
TGTTGTTGTTAGATCGCTGCTGCTGCTGCTGCTGGATTTATTGCTTCGGT
CGTTGGACCGTTGCTGCTACATACCGCTGCTGTATGTTTTGCTGTTGTTG
GTGGACCGCCGCCGCTGCTGCTGCTCCTATACATACTCCGTTCTGTTTAT
TTGGGGGGGGGGGGGGGGGGGGGGAGGGCGGTGGGCGTCGTCCTCCCTGC
GGTCGGGCACGGCCGCCTTTGTGCGTGCGCTGCTTGTGTCCTCCTNNNNN
NNNNNGGCGCCTCCCCTTTGTCTCTCTCTTGCTCGGGTGGTTGGGGGTGG
GGGGGGGGGGGGGGGGGGGGGGGGGGTTGGTGACAATATCATTGCCCCGA
TTTGTTCGCACCGACAACATGTGCTTTTCTGCGAGCCGTTTCTCTGTCTC
GAACCGTTCCCGAGTTTTTTTTGTCCCCCAAGACCTGTGCAATGGCGTTT
CAATGAAAAGTCGTCCCAATCCTAGCACCAACAGAACTGAACCGGCGTTA
ATCCCGCCGCGCGTCTCTCTCTGACACTACCACAGGTCATCCCGGCCATC
ACGAGCACGTTCGGCTACCCCATCCTGCTCCTGCCGCTGCTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11299:900..2891-

>mRNA_Ecto-sp9_F_contig11299.1115.1 ID=mRNA_Ecto-sp9_F_contig11299.1115.1|Name=mRNA_Ecto-sp9_F_contig11299.1115.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11299:900..2891- (Ectocarpus species9 EcSCA_722f female)
ATGGCGCAGCGGCTGTGGAGGGCCCTCGGAGGGCAACAGAACCCCTTGCC
GTCGGCAAACCCTAAGAACTGGCCCGAGCCTACCATCGAGGATGTCCTAG
AGCGGCCGACCAGATGGCGCAGCGGCTGTGGAGGGCCCTCGGAGGGCAAC
AGAACCCCTTGCCGTCGGCAAACCCTAAGAACTGGCCCGAGCCTACCATC
GAGGATGTCCTAGAGCGGCCGACCAGGATCGTGCAAGTCAACAAGCCTCA
GGAGTATTCCTTCTGCGACAACTTCATCAAGGATCGTGCAAGTCAACAAG
CCTCAGGAGTATTCCTTCTGCGACAACTTCATCAAGACTTCGAAGTACGA
AGTGTGGTCGTTCATGCCCAAGTTCCTGGCGGTGGAGTTCCACCCCAGGA
AGAAGATCGCCAACCTTTACTTTCTCATCGTCAGCTCTATGCAGACTTCG
AAGTACGAAGTGTGGTCGTTCATGCCCAAGTTCCTGGCGGTGGAGTTCCA
CCCCAGGAAGAAGATCGCCAACCTTTACTTTCTCATCGTCAGCTCTATGC
AGGTCATCCCGGCCATCACGAGCACGTTCGGCTACCCCATCCTGCTCCTG
CCGCTGCTCGTCATCCCGGCCATCACGAGCACGTTCGGCTACCCCATCCT
GCTCCTGCCGCTGCTC
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