mRNA_Ecto-sp9_F_contig11297.1114.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11297.1114.1
Unique NamemRNA_Ecto-sp9_F_contig11297.1114.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11297.1114.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11297contigEcto-sp9_F_contig11297:676..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size744
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11297.1114.1prot_Ecto-sp9_F_contig11297.1114.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11297 892..1407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.0522034-UTR-Ecto-sp9_F_contig11297:675..8911622928374.0522034-UTR-Ecto-sp9_F_contig11297:675..891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11297 676..891 +
1692277850.4889052-UTR-Ecto-sp9_F_contig11297:675..8911692277850.4889052-UTR-Ecto-sp9_F_contig11297:675..891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11297 676..891 +
1622928374.076479-UTR-Ecto-sp9_F_contig11297:1407..14191622928374.076479-UTR-Ecto-sp9_F_contig11297:1407..1419Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11297 1408..1419 +
1692277850.5106666-UTR-Ecto-sp9_F_contig11297:1407..14191692277850.5106666-UTR-Ecto-sp9_F_contig11297:1407..1419Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11297 1408..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928374.0643673-CDS-Ecto-sp9_F_contig11297:891..14071622928374.0643673-CDS-Ecto-sp9_F_contig11297:891..1407Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11297 892..1407 +
1692277850.5026119-CDS-Ecto-sp9_F_contig11297:891..14071692277850.5026119-CDS-Ecto-sp9_F_contig11297:891..1407Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11297 892..1407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11297.1114.1

>prot_Ecto-sp9_F_contig11297.1114.1 ID=prot_Ecto-sp9_F_contig11297.1114.1|Name=mRNA_Ecto-sp9_F_contig11297.1114.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=172bp
MNVRVCALAKLLLSPARSPSGLVKNKELEIELGPPEQWHLITRLGFTPLI
NRQPAKDVFNAKSTSTFRLALPPSPLSVRRTPRPNKASETRLVISGGSPS
SRGCRNTSEDKFFRHPLWMCPHESCSSKYLPVGARMQTKSPWLTPLLMPA
IAIIHDENQPNACMCHHHQND*
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mRNA from alignment at Ecto-sp9_F_contig11297:676..1419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11297.1114.1 ID=mRNA_Ecto-sp9_F_contig11297.1114.1|Name=mRNA_Ecto-sp9_F_contig11297.1114.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11297:676..1419+ (Ectocarpus species9 EcSCA_722f female)
GCTCCCGGTACGAATCTACCATCGCGCCGCAACCGTCCGCAGACAGCAGT
CGACGTCGCTGCACAAAGACAGCTCTTCGCTGCTCACATACATCCTACAT
ATATATTTTGTCGCGTACATACATATTCGATTTGAAAATTCCCTGCAATT
CCTTCATCTTGACGTCAGAGAGCAGCCTTGTATACGCAGTGTAAACAACT
CGCATACCCGACGTAGATGAATGTACGTGTTTGTGCGCTTGCCAAGCTCC
TCCTTTCCCCAGCACGCTCTCCATCTGGTCTGGTAAAAAACAAGGAGCTT
GAGATTGAGCTCGGGCCGCCCGAGCAATGGCATCTAATTACACGGTTAGG
GTTCACCCCTCTTATCAATCGCCAACCCGCCAAAGATGTGTTCAATGCAA
AGAGTACATCCACTTTTCGGCTCGCTCTCCCCCCCTCCCCTCTCTCCGTT
CGAAGGACTCCACGTCCAAACAAGGCTTCAGAGACTCGTCTCGTCATCTC
GGGCGGTTCCCCTAGTTCCCGTGGCTGTCGGAACACTTCTGAGGACAAGT
TCTTCCGGCACCCACTTTGGATGTGTCCGCACGAATCTTGCTCTTCCAAA
TACCTACCTGTAGGCGCCCGCATGCAGACGAAGTCCCCTTGGCTAACCCC
CCTCCTAATGCCAGCGATAGCAATCATTCATGACGAAAACCAACCCAACG
CCTGCATGTGCCACCATCACCAAAACGACTGACGCAAAAACGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11297:676..1419+

>mRNA_Ecto-sp9_F_contig11297.1114.1 ID=mRNA_Ecto-sp9_F_contig11297.1114.1|Name=mRNA_Ecto-sp9_F_contig11297.1114.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11297:676..1419+ (Ectocarpus species9 EcSCA_722f female)
ATGAATGTACGTGTTTGTGCGCTTGCCAAGCTCCTCCTTTCCCCAGCACG
CTCTCCATCTGGTCTGGTAAAAAACAAGGAGCTTGAGATTGAGCTCGGGC
CGCCCGAGCAATGGCATCTAATTACACGGTTAGGGTTCACCCCTCTTATC
AATCGCCAACCCGCCAAAGATGTGTTCAATGCAAAGAGTACATCCACTTT
TCGGCTCGCTCTCCCCCCCTCCCCTCTCTCCGTTCGAAGGACTCCACGTC
CAAACAAGGCTTCAGAGACTCGTCTCGTCATCTCGGGCGGTTCCCCTAGT
TCCCGTGGCTGTCGGAACACTTCTGAGGACAAGTTCTTCCGGCACCCACT
TTGGATGTGTCCGCACGAATCTTGCTCTTCCAAATACCTACCTGTAGGCG
CCCGCATGCAGACGAAGTCCCCTTGGCTAACCCCCCTCCTAATGCCAGCG
ATAGCAATCATTCATGACGAAAACCAACCCAACGCCTGCATGTGCCACCA
TCACCAAAACGACTGAATGAATGTACGTGTTTGTGCGCTTGCCAAGCTCC
TCCTTTCCCCAGCACGCTCTCCATCTGGTCTGGTAAAAAACAAGGAGCTT
GAGATTGAGCTCGGGCCGCCCGAGCAATGGCATCTAATTACACGGTTAGG
GTTCACCCCTCTTATCAATCGCCAACCCGCCAAAGATGTGTTCAATGCAA
AGAGTACATCCACTTTTCGGCTCGCTCTCCCCCCCTCCCCTCTCTCCGTT
CGAAGGACTCCACGTCCAAACAAGGCTTCAGAGACTCGTCTCGTCATCTC
GGGCGGTTCCCCTAGTTCCCGTGGCTGTCGGAACACTTCTGAGGACAAGT
TCTTCCGGCACCCACTTTGGATGTGTCCGCACGAATCTTGCTCTTCCAAA
TACCTACCTGTAGGCGCCCGCATGCAGACGAAGTCCCCTTGGCTAACCCC
CCTCCTAATGCCAGCGATAGCAATCATTCATGACGAAAACCAACCCAACG
CCTGCATGTGCCACCATCACCAAAACGACTGA
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