mRNA_Ecto-sp9_F_contig1129.1108.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1129.1108.1
Unique NamemRNA_Ecto-sp9_F_contig1129.1108.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 1.110e-132
Identity = 204/264 (77.27%), Postives = 211/264 (79.92%), Query Frame = 1
Query:    1 KIRGTGGRTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYD----------ACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETETRDVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLLSTTSAERRHSQMCGLLIAGPLLNRAPLISQAVVVGDITPSINIFVTLCLTEI 762
            KIRGTGGRTLHRRLLAMHV+ASVNM AGAAKYMLPPSDTSCRVSHRAW+ASLLFYD          ACLVLFLLAKTSVTNGNRTLT WE GITWWSRFWAWIYLPVS T LGL+FPGEVN EGTACFNSYGEETETR+VGDVAGFA NNVLLTVQYVLLLAMFIKPMLVS GNTQSGGAVYRRVVIRNIVCTIGIACAYVITTV     LLS+                       P   +A  VGDI PSINI VTLCLTE+
Sbjct:    2 KIRGTGGRTLHRRLLAMHVVASVNMGAGAAKYMLPPSDTSCRVSHRAWIASLLFYDVSAPQAVADGACLVLFLLAKTSVTNGNRTLTSWENGITWWSRFWAWIYLPVSGTVLGLSFPGEVNSEGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSR----------------------PDTDKAAAVGDIVPSINICVTLCLTEV 243          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 8.290e-129
Identity = 185/194 (95.36%), Postives = 188/194 (96.91%), Query Frame = 1
Query:    1 KIRGTGGRTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETETRDVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT 582
            KIRGTGGRTLHRRLLAMHVIASVNMSAGAAKYMLP SDTSCRVSHRAW+ASLLFYDACLVLFLLAKT VTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGL FPGEVN EGTACFNSY EET+T +VGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT
Sbjct:    2 KIRGTGGRTLHRRLLAMHVIASVNMSAGAAKYMLPLSDTSCRVSHRAWIASLLFYDACLVLFLLAKTGVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLTFPGEVNSEGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT 195          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y0_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 6.520e-89
Identity = 134/152 (88.16%), Postives = 137/152 (90.13%), Query Frame = 1
Query:    1 KIRGTGGRTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYD------ACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETETRDVGDVAGFASNNVLLTVQ 438
            KI GTGGRTLHRRLLAMHV+ASVNMSAGAAKYM P SD SCRVSHRAW+ASLL YD      ACLVLFLLAKTSVTNGNRTLT WEKGITWWSRFWAWIYLPVSAT LGL FPGEVN EGTACFNSYGEETETR+VGDVAGFASNNVLLTVQ
Sbjct:    2 KIHGTGGRTLHRRLLAMHVVASVNMSAGAAKYMFPLSDASCRVSHRAWIASLLLYDVSAPQAACLVLFLLAKTSVTNGNRTLTSWEKGITWWSRFWAWIYLPVSATVLGLRFPGEVNSEGTACFNSYGEETETREVGDVAGFASNNVLLTVQ 153          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.730e-77
Identity = 131/264 (49.62%), Postives = 164/264 (62.12%), Query Frame = 1
Query:   10 GTGGRTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETETRDVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLLSTTSAERRHSQMCGLLIAGPLLNRAPLISQAVVVGDITPSINIFVTLCLTEIALPLGFTSCIKSI 801
            G+  R LH+RLLAMH IA  NMSAG AKYM   S+ SC  + RA VA++L YDA LVLFL+ KTSVTNGNR L  WE  ITWWSRF+ W+ L   A FL        +LEGT C     +E E     D  GF  NN +L +Q+ LLLAMF+KP+++ QG+TQSGGAVYRR+V+RN+ CTI I   Y +TTV      L+T     + +Q+                       D+ P+ NIFVTLCLTEI+LPLGF+SC+K+I
Sbjct:   61 GSRVRALHKRLLAMHFIAIANMSAGCAKYMPDVSELSCLATRRAMVATILLYDASLVLFLVGKTSVTNGNRALAIWEACITWWSRFYGWVVLTTGALFLAAQASSVPSLEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQL----------------------ADLLPTANIFVTLCLTEISLPLGFSSCVKAI 302          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.640e-56
Identity = 112/263 (42.59%), Postives = 152/263 (57.79%), Query Frame = 1
Query:   22 RTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEG---TACFNSYGEETETRDVGD-VAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLLSTTSAERRHSQMCGLLIAGPLLNRAPLISQAVVVGDITPSINIFVTLCLTEIALPLGFTSCIKS 798
            R LH  LL  H ++ +   A   KY LP ++ +C  +H+  V+ +L YDA L+ FLLAK  VTNG+R L  WE  I W SR +AWIYLP+ A  +   F G  N E    T C N Y  + +T +V D V G+ SN   L +Q+VLLL +F++P+LV    +QSG A+YR VVI+NI CTI +  AY +TTV                      ++   L+ ++   + A +  DITP +N FVTLCLTEIALPLGF+SC K+
Sbjct:   82 RFLHITLLVTHFVSVITGVAAVFKYTLPVTEANCTATHKVLVSMILLYDASLLTFLLAKVHVTNGHRKLAWWETVIVWISRGYAWIYLPIVAVVIPYQFRGGTNDEASVKTFCVNGYHMDDDTDEVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTV----------------------VVIAALIRQSNDSNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKA 322          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 4.460e-55
Identity = 97/212 (45.75%), Postives = 126/212 (59.43%), Query Frame = 1
Query:  166 DACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETETRDVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLLSTTSAERRHSQMCGLLIAGPLLNRAPLISQAVVVGDITPSINIFVTLCLTEIALPLGFTSCIKSI 801
             A LVLFL+ K SVTNGNR L  WE  ITWWSRF+ W+ L   A FL        +LEGT C     +E E     D  GF  NN +L +Q+ LLLA+F+KP+++ QG+TQSGGAVYRR+V+RN+ CTI I   Y +TTV      L+T     + +Q+                       D+ P+ NIFVTLCLTE++LPLGF+SC+K+I
Sbjct:   12 QASLVLFLVGKASVTNGNRALAIWEACITWWSRFYGWVVLTTGAFFLAAQASSVPSLEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQL----------------------ADLLPTANIFVTLCLTELSLPLGFSSCVKAI 201          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 5.360e-49
Identity = 88/199 (44.22%), Postives = 126/199 (63.32%), Query Frame = 1
Query:   22 RTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETET---RDVGDVA-GFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLL 606
            R LH  LL  H++A + +++   KY LP + ++C  +H+   A  + +DA L+ FLL K  VTNG R L+CWEKG+ W  R +AWIYLP+++ F+   +PG  N EGT C N +  + +    R+  D A G+A  N +L VQYVLLL +F++P++V     QSGGAVYR VVIRNI CT+ +  +Y+ITT+     LL
Sbjct:   98 RFLHIALLLEHIVALIAIASTVLKYALPVTASNCNATHKVSTAFAILFDASLLTFLLFKVDVTNGIRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGGTNEEGTFCENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALL 296          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.270e-48
Identity = 84/199 (42.21%), Postives = 126/199 (63.32%), Query Frame = 1
Query:   22 RTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETET---RDVGDVA-GFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLL 606
            R+LH  L+  H++A + +++   KY LP + ++C  +H+   A  + +DA L+ FLL K  VTNG R L+CWEKG+ W  R +AWIYLP+++ F+   +PG    +GT C NS+  + +    R+  D A G+A  N +L VQYVLLL +F++P++V     QSGGAVYR VV+RN+ CT  +  +Y+ITT+     LL
Sbjct:   52 RSLHVALVVEHIVALIAIASTVLKYALPVTASNCNATHKISTAFAILFDASLLTFLLFKVDVTNGMRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGANIYQGTFCENSFNRDEDVNYEREASDNAFGYAVTNAMLLVQYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALL 250          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.180e-46
Identity = 89/196 (45.41%), Postives = 120/196 (61.22%), Query Frame = 1
Query:   22 RTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVASLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEETETRDVGD-VAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLL 606
            R LH  LL  HV++ + + A   KY LP +  +C  +H+  V+ LL YDA L+ FLLAK  VTNG+R L  WE  I W SR +AWIYLP+ A  +   F G  N E T C N Y  + +  +V + + G+ SN   L +Q+VLLL +F++P+LV    +QSG A+YRRVVI+NI CTI +  AY +TTV     LL
Sbjct:   82 RFLHITLLVTHVVSVMAVVAALFKYTLPVTVENCTATHKVLVSMLLLYDASLLTFLLAKVHVTNGHRKLAWWETAIVWISRGYAWIYLPIVAVAIPYQFRGGTNDERTFCINGYNMDDDADEVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALL 277          
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.010e-41
Identity = 83/197 (42.13%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  226 LTCWEKGITWWSRFWAWIYLPVSATFLGLNFPGEVNLEGTACFNSYGEE--TETRDVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVXXXXXLLSTTSAERRHSQMCGLLIAGPLLNRAPLISQAVVVGDITPSINIFVTLCLTEIALPLGFTSCIKSINTG 810
            L  WEK I WWSR + W+YLP+ A  LG  FPG  +  GT C+N       +E     +   F  NNVLL VQ++LLL +F++PMLV     QSGGAVYRRVV+RN+ CT GI  +Y ITT+     LL  +    + +Q                      + D+  + N   TLCLTEI LPLGF SC+K+ +TG
Sbjct:    2 LAWWEKAIRWWSRLYGWVYLPLMALMLGTRFPGGTDPAGTFCYNGIVPTGASELTTSNNAQSFGINNVLLVVQFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNKSAQ----------------------IRDVALAANSLGTLCLTEITLPLGFRSCMKACSTG 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1129.1108.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Uncharacterized1.110e-13277.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.290e-12995.36protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.520e-8988.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.730e-7749.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.640e-5642.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.460e-5545.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.360e-4944.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.270e-4842.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.180e-4645.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.010e-4142.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1129contigEcto-sp9_F_contig1129:18441..22421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003530.1
Exons7
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928373.4397464-CDS-Ecto-sp9_F_contig1129:18440..186081622928373.4397464-CDS-Ecto-sp9_F_contig1129:18440..18608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 18441..18608 +
1692277850.2692018-CDS-Ecto-sp9_F_contig1129:18440..186081692277850.2692018-CDS-Ecto-sp9_F_contig1129:18440..18608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 18441..18608 +
1622928373.4577863-CDS-Ecto-sp9_F_contig1129:18867..189831622928373.4577863-CDS-Ecto-sp9_F_contig1129:18867..18983Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 18868..18983 +
1692277850.2771988-CDS-Ecto-sp9_F_contig1129:18867..189831692277850.2771988-CDS-Ecto-sp9_F_contig1129:18867..18983Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 18868..18983 +
1622928373.4680135-CDS-Ecto-sp9_F_contig1129:19436..194911622928373.4680135-CDS-Ecto-sp9_F_contig1129:19436..19491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 19437..19491 +
1692277850.2846668-CDS-Ecto-sp9_F_contig1129:19436..194911692277850.2846668-CDS-Ecto-sp9_F_contig1129:19436..19491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 19437..19491 +
1622928373.47792-CDS-Ecto-sp9_F_contig1129:19649..197481622928373.47792-CDS-Ecto-sp9_F_contig1129:19649..19748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 19650..19748 +
1692277850.29199-CDS-Ecto-sp9_F_contig1129:19649..197481692277850.29199-CDS-Ecto-sp9_F_contig1129:19649..19748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 19650..19748 +
1622928373.4879403-CDS-Ecto-sp9_F_contig1129:20098..202701622928373.4879403-CDS-Ecto-sp9_F_contig1129:20098..20270Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 20099..20270 +
1692277850.299584-CDS-Ecto-sp9_F_contig1129:20098..202701692277850.299584-CDS-Ecto-sp9_F_contig1129:20098..20270Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 20099..20270 +
1622928373.5015984-CDS-Ecto-sp9_F_contig1129:20467..206161622928373.5015984-CDS-Ecto-sp9_F_contig1129:20467..20616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 20468..20616 +
1692277850.309625-CDS-Ecto-sp9_F_contig1129:20467..206161692277850.309625-CDS-Ecto-sp9_F_contig1129:20467..20616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 20468..20616 +
1622928373.5209348-CDS-Ecto-sp9_F_contig1129:22358..224211622928373.5209348-CDS-Ecto-sp9_F_contig1129:22358..22421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 22359..22421 +
1692277850.31803-CDS-Ecto-sp9_F_contig1129:22358..224211692277850.31803-CDS-Ecto-sp9_F_contig1129:22358..22421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1129 22359..22421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1129.1108.1prot_Ecto-sp9_F_contig1129.1108.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1129 18441..22421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1129.1108.1

>prot_Ecto-sp9_F_contig1129.1108.1 ID=prot_Ecto-sp9_F_contig1129.1108.1|Name=mRNA_Ecto-sp9_F_contig1129.1108.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=274bp
KIRGTGGRTLHRRLLAMHVIASVNMSAGAAKYMLPPSDTSCRVSHRAWVA
SLLFYDACLVLFLLAKTSVTNGNRTLTCWEKGITWWSRFWAWIYLPVSAT
FLGLNFPGEVNLEGTACFNSYGEETETRDVGDVAGFASNNVLLTVQYVLL
LAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLA
LLSTTSAERRHSQMCGLLIAGPLLNRAPLISQAVVVGDITPSINIFVTLC
LTEIALPLGFTSCIKSINTGRHSG
back to top

mRNA from alignment at Ecto-sp9_F_contig1129:18441..22421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1129.1108.1 ID=mRNA_Ecto-sp9_F_contig1129.1108.1|Name=mRNA_Ecto-sp9_F_contig1129.1108.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3981bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1129:18441..22421+ (Ectocarpus species9 EcSCA_722f female)
AAAATACGTGGTACCGGCGGCAGGACGCTCCACCGGAGGCTTCTGGCCAT GCACGTTATTGCGTCCGTCAATATGAGCGCGGGGGCAGCGAAGTACATGC TTCCCCCGTCGGATACTTCGTGCCGGGTGTCTCATCGAGCATGGGTCGCT TCGCTCCTGTTCTACGACGTAAGCGCACCACAGGCGGTAGCTGGTGGTGT AAGCGGGGTTTCATTCGTAGAACGCTTCACAGTTCATGAAGCCATGGATT GCGTCGATGATTGAGGTGTTGGCAGTCAGGAATATCCGCTTTCCTTCTGT ATATGACCGTTTCGAGCCGACATTTTGGCGTTTCCTTGGAGCATATCCAA GTTTAGCATCCGGACTGGTCATAGGCGAGGCGCAAACCTAACGCTTGCAT GCTGGAAATGCTCTTGCCTACGACCAGGCGTGCCTGGTGCTGTTTCTCCT TGCAAAGACAAGCGTTACGAACGGCAACAGAACTCTCACCTGTTGGGAAA AAGGCATCACCTGGTGGTCTCGCTTCTGGGCCTGGATATACCTGTGAGCA GAGTGTCAAAATGATGAGTGATTGCCGGAAATCTCCCTCACAATCGGGCA TCATTGGGCTGCCAGCTTCTCCGTTTGATACCAAACAATATCTCTGGTAC TAGCGGTCGTCTGGGACGCGGTAGACAGGTGGTTTCCACGACACCCAATG ACAAAGCAGGCTTTCTTGTTAATCCTGCATACTTTCAGTATTGATCTGGT CTCACCAGAACGTTCCGTCTCCTCGTCGTACATGGTTCTGTGGTTGTTGT TCTGCTTGTCGCTTGAACAAACGGCCGGTGGCACCCCTCGCGATTTCATA CAATTCCGTCCCAGGACCAACGGTTGTGTTCATCGTGCATGCTATCGCAC GCGTCGGAGTGCACTTCGCTTCAGACCTCTCGAGAAATCGCGCATTGGTT TCGTACTTTCTCCGAACCTCCGTTGTGTTCCTGGTCTCTTTCACAGGCCG GTATCAGCAACGTTCTTGGGCCTTAACTTTCCTGGCGAGGTAAATTTGGA GGTAAGAGCAACCGGTGTTTTGAATATTATTTTTTTTCCCTTCAAATAAT ATCCCCGTTCGCGCTCAAGAGCAACCCCTTTGCTCGAACTCGCTCTCGAG GCATCGCCCTACGTGATGATACGACGAAACCCACTACCTTCCCGCTCTGA TTCGGTCAGGGGACGGCGTGTTTCAATAGCTACGGGGAGGAGACGGAAAC TAGGGACGTCGGTGATGTGGCTGGATTCGCTAGCAACAATGTCTTGTTGA CTGTCCAGGTGAGCTAAACGCACACGTTACGCGTCGGGCCGTTTCGATGT AACGCAACAATCAAGGAAACCCGAAACTCCACAGCTATAGTCCTTTAGAG TGGGCAAGAAAGAGACGATGGGTTCGCAAGATGTGTACGGGTTGGCAGGC GCATCGTTCTCGTGTCCAACGCTTTTTCTTACCACCCGTGCCGCCAGCAT TGGCGGTACACCCTTCATCTCGGGGGGACAAAGCGCGGCACCGAAGTTTG TATGCTTGCACGACAGCACCTGGACCATGTTCCTTGCGCTCGACACCCTT ACTCCATTCCCCCTTTCATACCTTCGGCCCTACTGTGTCATCACAAATGC CCTGCCAGTACGTGCTGCTGCTGGCGATGTTTATAAAGCCAATGCTGGTG TCACAAGGCAACACTCAATCCGGCGGGGCGGTGTACCGCCGGGTGGTGAT CCGGAATATAGTGTGCACTATCGGCATCGCCTGTGCGTACGTGATCACGA CGGTTGTGGTGGTCCTCGCGTTACTCAGCAGTCCTTCTGATACCAACAAG GTGCGGGATTCTTCTCGGTGTTGTCTACACAGGCCCTGTACTGCTCCGTA CGAGTTTGATAGACTGGGCGACCGAAGCGCGCAGAGACTGTTTCGGTCCT ACTAATATTACCTGCGTCGCCCACATCGTGCATATTTGTCCGATGCGCAA TCCCCCTCGCATCTCGTTCTCACCAAGCCACGTCCGCAGAGCGGCGTCAT TCTCAGATGTGTGGACTACTCATCGCGGGTCCATTACTCAACCGTGCCCC CTTGATATCGCAGGCGGTTGTCGTTGGAGACATCACACCATCGATCAACA TTTTCGTGACCCTGTGCCTGACCGAGGTGGGTGACGACAACGAGTTAGTC ACTGTTCCTTGCATGAGCTGATTTATCTGCGATACCGGTGTCGCTGGCTC TTGTCTACGATACAGCCCCGATCCCACCTAGATAGGCCGAGCAACACCAC CGCTGTGCCTGCAAGGCTCACAGCTGCCTCAGCGAAAACGCTTAGGCCCG CGTTGTCCTGGTTGTGGAGGTACGTGTGCTCAAATGCGACGGCCTTTAAG CCAGCGGGGTGGGCAAGCAGATTTACGACAACGCCTCGCAAAGTGCTAGC CACACTCAAGAGGAAGCGGCAATATCACCACTGTTTTGTGCGCACATGAC AGACATGATAGAAACGTCCTTGTGCACCCTCCACTTCGCTCTATGTGCTC AAGAGAAAAAGACACATAAAACAGTTGCATTGTTAGGGCATGATAGATAT TATCTAAAGGGCTATTGTGGAGTCTTAAATCGCTCCGTGGCGGTGGAGGT CTGAACTCTAGGAAGTTCACGGTAGCCGTTTTCCGATCATCGTTGTTCAC GACGAAGTTACAACAGCACCCCCGCCATCATTCGCCCAAGGAGAAAGCAA ACAACGCCACTGCTGTGGTTGCACGTTGATCCCGCTGAATGAAGTCGAAT AACTAGTTTCCCTACCCGCGTCACGGATGAGTATACGTTCAACATCATCC CATGGCCGTTTGTGGGGCGGTGTGTATTTCCCACGACCACCGTACCATAC GGTCCGAAAGATGCAGATCGCCCGTAAAATAAGCTCGGGGCCACAGGGAG CAGTCGTTCACTTGATACGTGACCGGCGGAAAAGTCCCTGAAACAAGCGC GGAATCTGTTGAAAAATGCGGTGTGGCCAGGCCAGGAGTTGGGAAGACCC GCTGTGCGATTTGCTAAGCGTTTTCACCAATAGTTCCCGGAGGCACACTA TGGTCATAATAATTTCCGTGCGTGACATCACCGCCGATACAGCTAGTAAT ACGGCTTAAGCGTTCCCTTCGAATTTATAGAAGGACTACTTTGACGCATG TGTACCGGCGTCGTTGGAGCTTGGTCCCTTGAAATCAGTCAGACGATGGG GAAACGTCCGGAGGCACAAACTTTGCTGCGGCGTTGACAAATACGGCGGA TTATGTCGACATCCCTCTCCCTTGCTGATAGGGTACTGCGTGAAACGACG GCTGGGGAAGCGACCAACATACATATCTCTGTCCATTCTTGGCGTTGGAG ACGAACCCTACTGTAGTACCCTACATCGCGACGCATTCAAACCTTTTCAT TTTTCCCTAGAGTTCAATTCAGTTCCGTGACCCGTATTAACTCATCCAAG GTTGCTGGGCAATGACGAATCCCCGGCGCGCTCCCTTCTCGCTCTCGGAT ATTCAAAAGTTTAAAGTTATTGACAGCACAACGGCAGGCGAGAAGCTGTT GATCCCTGTCGCATTTTGAAGTCAGGCGGCATTGTTCACGCCGTGCGTGA TCTGAAGTACGGGCGTGCACCCGACTCGAACATCACGTGCCCGGAACCCT TGGCGTAGAGTTCCAGTGGCCTTTCGAGTCCACATTGTAGCCTTTTGTGT TCGTCAGATTTGCTGCTTTGGGGTTTGTTCCACCCACAAAAATGATACTC TACGGACGGAGAGCAAATGCGTTCGTCGTCGGTTTCACATCATAGCCGAT GCAACAGGCCTCCCAACTCTGCTGTGTACCCGTGTCCTCGGTGTTGATAC TTTTCCCTGCCATTGCAGATTGCCTTGCCTCTCGGATTCACCAGCTGCAT CAAGTCCATCAACACTGGCAGGCACTCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1129:18441..22421+

>mRNA_Ecto-sp9_F_contig1129.1108.1 ID=mRNA_Ecto-sp9_F_contig1129.1108.1|Name=mRNA_Ecto-sp9_F_contig1129.1108.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1644bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1129:18441..22421+ (Ectocarpus species9 EcSCA_722f female)
AAAATACGTGGTACCGGCGGCAGGACGCTCCACCGGAGGCTTCTGGCCAT
GCACGTTATTGCGTCCGTCAATATGAGCGCGGGGGCAGCGAAGTACATGC
TTCCCCCGTCGGATACTTCGTGCCGGGTGTCTCATCGAGCATGGGTCGCT
TCGCTCCTGTTCTACGACAAAATACGTGGTACCGGCGGCAGGACGCTCCA
CCGGAGGCTTCTGGCCATGCACGTTATTGCGTCCGTCAATATGAGCGCGG
GGGCAGCGAAGTACATGCTTCCCCCGTCGGATACTTCGTGCCGGGTGTCT
CATCGAGCATGGGTCGCTTCGCTCCTGTTCTACGACGCGTGCCTGGTGCT
GTTTCTCCTTGCAAAGACAAGCGTTACGAACGGCAACAGAACTCTCACCT
GTTGGGAAAAAGGCATCACCTGGTGGTCTCGCTTCTGGGCCTGGATATAC
CTGCGTGCCTGGTGCTGTTTCTCCTTGCAAAGACAAGCGTTACGAACGGC
AACAGAACTCTCACCTGTTGGGAAAAAGGCATCACCTGGTGGTCTCGCTT
CTGGGCCTGGATATACCTGCCGGTATCAGCAACGTTCTTGGGCCTTAACT
TTCCTGGCGAGGTAAATTTGGAGGCCGGTATCAGCAACGTTCTTGGGCCT
TAACTTTCCTGGCGAGGTAAATTTGGAGGGGACGGCGTGTTTCAATAGCT
ACGGGGAGGAGACGGAAACTAGGGACGTCGGTGATGTGGCTGGATTCGCT
AGCAACAATGTCTTGTTGACTGTCCAGGGGACGGCGTGTTTCAATAGCTA
CGGGGAGGAGACGGAAACTAGGGACGTCGGTGATGTGGCTGGATTCGCTA
GCAACAATGTCTTGTTGACTGTCCAGTACGTGCTGCTGCTGGCGATGTTT
ATAAAGCCAATGCTGGTGTCACAAGGCAACACTCAATCCGGCGGGGCGGT
GTACCGCCGGGTGGTGATCCGGAATATAGTGTGCACTATCGGCATCGCCT
GTGCGTACGTGATCACGACGGTTGTGGTGGTCCTCGCGTTACTCAGCATA
CGTGCTGCTGCTGGCGATGTTTATAAAGCCAATGCTGGTGTCACAAGGCA
ACACTCAATCCGGCGGGGCGGTGTACCGCCGGGTGGTGATCCGGAATATA
GTGTGCACTATCGGCATCGCCTGTGCGTACGTGATCACGACGGTTGTGGT
GGTCCTCGCGTTACTCAGCACCACGTCCGCAGAGCGGCGTCATTCTCAGA
TGTGTGGACTACTCATCGCGGGTCCATTACTCAACCGTGCCCCCTTGATA
TCGCAGGCGGTTGTCGTTGGAGACATCACACCATCGATCAACATTTTCGT
GACCCTGTGCCTGACCGAGCCACGTCCGCAGAGCGGCGTCATTCTCAGAT
GTGTGGACTACTCATCGCGGGTCCATTACTCAACCGTGCCCCCTTGATAT
CGCAGGCGGTTGTCGTTGGAGACATCACACCATCGATCAACATTTTCGTG
ACCCTGTGCCTGACCGAGATTGCCTTGCCTCTCGGATTCACCAGCTGCAT
CAAGTCCATCAACACTGGCAGGCACTCGGGGATTGCCTTGCCTCTCGGAT
TCACCAGCTGCATCAAGTCCATCAACACTGGCAGGCACTCGGGG
back to top