mRNA_Ecto-sp9_F_contig1128.1102.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1128.1102.1
Unique NamemRNA_Ecto-sp9_F_contig1128.1102.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1128.1102.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1128contigEcto-sp9_F_contig1128:24506..25092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928372.3292089-CDS-Ecto-sp9_F_contig1128:24505..248111622928372.3292089-CDS-Ecto-sp9_F_contig1128:24505..24811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 24506..24811 +
1692277849.7389753-CDS-Ecto-sp9_F_contig1128:24505..248111692277849.7389753-CDS-Ecto-sp9_F_contig1128:24505..24811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 24506..24811 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928372.3446221-UTR-Ecto-sp9_F_contig1128:24811..250921622928372.3446221-UTR-Ecto-sp9_F_contig1128:24811..25092Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1128 24812..25092 +
1692277849.7506533-UTR-Ecto-sp9_F_contig1128:24811..250921692277849.7506533-UTR-Ecto-sp9_F_contig1128:24811..25092Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1128 24812..25092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1128.1102.1prot_Ecto-sp9_F_contig1128.1102.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1128 24506..24811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1128.1102.1

>prot_Ecto-sp9_F_contig1128.1102.1 ID=prot_Ecto-sp9_F_contig1128.1102.1|Name=mRNA_Ecto-sp9_F_contig1128.1102.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=102bp
MFFLWEQSFSSSGDSSSVCTRQSLLLSVYSSRPRARLVKVRTPRTDCDYL
SYEQVLLCRFSAVIFWGGSAWSGEQERAVCFGFCVETACIYGRRRNKHAL
A*
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mRNA from alignment at Ecto-sp9_F_contig1128:24506..25092+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1128.1102.1 ID=mRNA_Ecto-sp9_F_contig1128.1102.1|Name=mRNA_Ecto-sp9_F_contig1128.1102.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=587bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1128:24506..25092+ (Ectocarpus species9 EcSCA_722f female)
ATGTTTTTTCTCTGGGAACAGAGCTTCTCCTCGTCTGGCGACAGCAGCAG
TGTATGCACGCGGCAGTCGCTTCTGCTTTCCGTATACAGCAGTAGACCGA
GGGCGCGACTCGTGAAAGTCAGAACACCTCGCACCGACTGCGATTACCTG
TCATACGAACAGGTACTACTGTGTAGATTCAGCGCGGTGATATTCTGGGG
CGGCAGTGCTTGGTCGGGGGAACAGGAACGGGCGGTTTGTTTCGGTTTTT
GTGTTGAGACAGCATGCATCTACGGCAGGAGGAGGAACAAACACGCTTTG
GCGTGATCTGGAGTCTCGACTCGACGGCCACTGCTGCCGCGTAGTGCAGC
TGCTGCACACCTACAGTAAGAAGAATGATGCACACCGAGCAAATTATGAG
CGTTTTCGTTGTGGTCTTGCCTTCATTGGCGCAGCAGGCCCCTTGCCAAG
CTACTTGTACACACACACCATGCCGTACGGACGCACCCTCTCCAAGCCCT
CGTTTCTAGCCCAGCCTAGCTAGTAAAAATGTGAAAGCAGTGTCATGCTC
GGTAGACAGCACAACACCAGCGGGTCTGCAAAATTGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1128:24506..25092+

>mRNA_Ecto-sp9_F_contig1128.1102.1 ID=mRNA_Ecto-sp9_F_contig1128.1102.1|Name=mRNA_Ecto-sp9_F_contig1128.1102.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1128:24506..25092+ (Ectocarpus species9 EcSCA_722f female)
ATGTTTTTTCTCTGGGAACAGAGCTTCTCCTCGTCTGGCGACAGCAGCAG
TGTATGCACGCGGCAGTCGCTTCTGCTTTCCGTATACAGCAGTAGACCGA
GGGCGCGACTCGTGAAAGTCAGAACACCTCGCACCGACTGCGATTACCTG
TCATACGAACAGGTACTACTGTGTAGATTCAGCGCGGTGATATTCTGGGG
CGGCAGTGCTTGGTCGGGGGAACAGGAACGGGCGGTTTGTTTCGGTTTTT
GTGTTGAGACAGCATGCATCTACGGCAGGAGGAGGAACAAACACGCTTTG
GCGTGAATGTTTTTTCTCTGGGAACAGAGCTTCTCCTCGTCTGGCGACAG
CAGCAGTGTATGCACGCGGCAGTCGCTTCTGCTTTCCGTATACAGCAGTA
GACCGAGGGCGCGACTCGTGAAAGTCAGAACACCTCGCACCGACTGCGAT
TACCTGTCATACGAACAGGTACTACTGTGTAGATTCAGCGCGGTGATATT
CTGGGGCGGCAGTGCTTGGTCGGGGGAACAGGAACGGGCGGTTTGTTTCG
GTTTTTGTGTTGAGACAGCATGCATCTACGGCAGGAGGAGGAACAAACAC
GCTTTGGCGTGA
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