mRNA_Ecto-sp9_F_contig1128.1099.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1128.1099.1
Unique NamemRNA_Ecto-sp9_F_contig1128.1099.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC8_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.370e-55
Identity = 101/110 (91.82%), Postives = 102/110 (92.73%), Query Frame = 1
Query:   16 KGSLLAFTFLHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSARRARVPKSWEASARGAHSDSVRLTQDLAAEE 345
            KGSLLAFTFLHTLTLG        ASLG+LRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSARRARVPKSWEASARGAHSDSVRLTQDLAAEE
Sbjct:   43 KGSLLAFTFLHTLTLGXXXXXXXXASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSARRARVPKSWEASARGAHSDSVRLTQDLAAEE 152          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDM7_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 5.290e-14
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 EKGSLLAFTFLHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSARR 258
            E  S+     +  L L +NR+ +L+  + +L+ +R L+ L+L  NPLAEET YRL VIK +PWLE LD  KIT EER+ A++
Sbjct:   56 EGSSVGRLLHVEELILNDNRLEDLKTHVDILQRLRRLKRLDLYNNPLAEETSYRLHVIKAMPWLEVLDQMKITPEERAKAKK 137          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Hypothetical (protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QKS1_DUNTE)

HSP 1 Score: 74.3 bits (181), Expect = 3.380e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   16 KGSLLAFTFLHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSAR 255
            KG LL F FL  L L NN + NL   +  L   ++L+ L L+GNP  EE  YR++VI N+P L+ LD+H +T+ ER  AR
Sbjct:   93 KGCLLTFKFLEVLDLSNNLLRNLDKIIATLSKFKYLKNLNLTGNPCIEEPDYRMIVIYNIPSLQILDLHMVTDTERQKAR 172          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NZK7_9TRYP)

HSP 1 Score: 64.3 bits (155), Expect = 1.310e-9
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSA------RRARVPKS 276
            L  LTL +NR+GNL+A    L+ +R LR L+L GNPL +E GYRL +I   P +E LD   +  EER +A       R R P+S
Sbjct:  257 LEVLTLAHNRLGNLRAVSARLKPLRWLRELDLRGNPLCDEVGYRLFLIHEHPNIEILDRRAVRPEERKAAAEMYGSNRTRTPQS 340          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Putative (leucine-rich repeat-containing protein 72-like n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7LAG9_9TRYP)

HSP 1 Score: 63.5 bits (153), Expect = 2.420e-9
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSA 252
            L  L L +NR+ NL A    L+L+R LR L+L GNPL +E GYRL +I   P LE LD   + +EER  A
Sbjct:  211 LEVLFLAHNRLSNLSAVSAQLKLLRCLRELDLRGNPLCDEVGYRLFLIHEHPHLEVLDRRVVRDEERKEA 280          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: putative (leucine-rich repeat-containing protein 72-like n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F499B1)

HSP 1 Score: 62.4 bits (150), Expect = 6.090e-9
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSA 252
            L  L L NNR+ NL A    L+ +R LR L+L GNPL +E GYRL +I  LP LE LD   +  +ER  A
Sbjct:  189 LEVLALANNRLSNLTAVSTQLKPLRCLRELDLRGNPLCDEVGYRLFLIYELPQLEVLDRRAVRYDERKEA 258          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trypanosoma cruzi marinkellei TaxID=85056 RepID=K2N8P0_TRYCR)

HSP 1 Score: 60.5 bits (145), Expect = 2.910e-8
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSA 252
            L  L L +NR+ NL A    LR ++ LR L+L GNPL +E GYRL +I   P LE LD   + +EER  A
Sbjct:  199 LEVLFLAHNRLSNLNAVSAQLRPLKCLRELDLRGNPLCDEEGYRLFLIHEHPHLEVLDRRVVRDEERKEA 268          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Putative (leucine-rich repeat-containing protein 72-like n=1 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A3R7MEW6_TRYRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.370e-7
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSA 252
            L  L L +NR+ +L A    L+ +R LR L+L GNPL +E GYRL +I   P LE LD   + +EER  A
Sbjct:  198 LEVLFLAHNRLSDLSAVSAQLKPLRCLRELDLRGNPLCDEVGYRLFLIYEHPHLEVLDRRVVRDEERKEA 267          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1IMK0_LEPSE)

HSP 1 Score: 57.4 bits (137), Expect = 3.530e-7
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSA 252
            L  L+L +N + +L   +  LR +RHLRYL+L GNP+ +E  YR   I  LP +E LD   +T++ER  A
Sbjct:  184 LEHLSLAHNELTDLDCIMQPLRRLRHLRYLDLRGNPIVDEPSYRQRCIVALPQVEVLDGLTVTQDERRDA 253          
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YA28_CIOSA)

HSP 1 Score: 55.8 bits (133), Expect = 7.680e-7
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   19 GSLLAFTFLHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSARRARVP 270
            G L    +L  L L  N++ NL A L  +  +  LR L L  NP+A E+GYRLLVI +LP +  LD   +T  ER  ++    P
Sbjct:   88 GCLSHLRYLQVLMLQKNQLVNLNAVLHEISPLHALRVLNLFDNPVAHESGYRLLVIHSLPSVALLDREAVTSNERKRSKAIHEP 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1128.1099.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Hypothetical2.370e-5591.82leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
Uncharacterized5.290e-1446.34protein (Fragment) n=1 Tax=Aureococcus anophageffe... [more]
Hypothetical3.380e-1346.25protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 ... [more]
Uncharacterized1.310e-945.24protein n=1 Tax=Trypanosoma theileri TaxID=67003 R... [more]
Putative2.420e-948.57leucine-rich repeat-containing protein 72-like n=1... [more]
putative6.090e-948.57leucine-rich repeat-containing protein 72-like n=1... [more]
Uncharacterized2.910e-847.14protein n=1 Tax=Trypanosoma cruzi marinkellei TaxI... [more]
Putative1.370e-745.71leucine-rich repeat-containing protein 72-like n=1... [more]
Uncharacterized3.530e-742.86protein n=1 Tax=Leptomonas seymouri TaxID=5684 Rep... [more]
Uncharacterized7.680e-739.29protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1128contigEcto-sp9_F_contig1128:8802..9788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue3.6e-47
Seed eggNOG ortholog2880.D7FPC8
Preferred nameLRRC72
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size349
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1128.1099.1prot_Ecto-sp9_F_contig1128.1099.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1128 8802..9788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928372.4381773-CDS-Ecto-sp9_F_contig1128:8801..88881622928372.4381773-CDS-Ecto-sp9_F_contig1128:8801..8888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 8802..8888 +
1692277849.7692308-CDS-Ecto-sp9_F_contig1128:8801..88881692277849.7692308-CDS-Ecto-sp9_F_contig1128:8801..8888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 8802..8888 +
1622928372.4550383-CDS-Ecto-sp9_F_contig1128:9208..93461622928372.4550383-CDS-Ecto-sp9_F_contig1128:9208..9346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 9209..9346 +
1692277849.7798996-CDS-Ecto-sp9_F_contig1128:9208..93461692277849.7798996-CDS-Ecto-sp9_F_contig1128:9208..9346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 9209..9346 +
1622928372.4681711-CDS-Ecto-sp9_F_contig1128:9665..97881622928372.4681711-CDS-Ecto-sp9_F_contig1128:9665..9788Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 9666..9788 +
1692277849.78958-CDS-Ecto-sp9_F_contig1128:9665..97881692277849.78958-CDS-Ecto-sp9_F_contig1128:9665..9788Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1128 9666..9788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1128.1099.1

>prot_Ecto-sp9_F_contig1128.1099.1 ID=prot_Ecto-sp9_F_contig1128.1099.1|Name=mRNA_Ecto-sp9_F_contig1128.1099.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=116bp
MVRFEKGSLLAFTFLHTLTLGNNRIGNLQASLGVLRLMRHLRYLELSGNP
LAEETGYRLLVIKNLPWLETLDMHKITEEERSSARRARVPKSWEASARGA
HSDSVRLTQDLAAEEA
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mRNA from alignment at Ecto-sp9_F_contig1128:8802..9788+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1128.1099.1 ID=mRNA_Ecto-sp9_F_contig1128.1099.1|Name=mRNA_Ecto-sp9_F_contig1128.1099.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=987bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1128:8802..9788+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCGGTTCGAAAAGGGATCGCTGCTAGCGTTCACCTTCTTGCATAC GCTAACGCTGGGGAACAACCGCATCGGCAATCTCCAGGTATACGCACATG ATACTTCGTCCCAGTGCAATACTGACTTTTGTTTTTCCGCGCGAGAAATG TAGAGCGTTTGTCCACTGCTACAGGTGGGGCTGTCGGTGTGTTTGCGTCC CGTCGTGCAACGAGTAAACACTAGCGCAACGCGGTACATGTCTCTCCACA CCCCTCTTAGAACCGTTTCACACATTCCTTCACGAACGACAATGCATGGG TGCGATTGTATTAGCACGGGTATATCCCGTTACGCACGTCGACTGTGAAA TCTTCCGGCGTTTTTGGCGTTCCCATCAATCGAACATCCGTGTATTTCAA CCACCAGGCAAGCCTGGGAGTCTTGCGGCTCATGCGACATCTGCGCTATC TAGAACTCTCCGGCAACCCCCTCGCGGAAGAAACCGGGTACCGCCTGCTT GTCATAAAAAATCTTCCCTGGTTGGAAACGCTGGATATGCACAAGGTATG GAACAGGTGCACAACTCATGGCCATCTTCATGTCTTAGAACCGGTGTTCA TTCCCTGGGTGGGAGTCTTGCGTGTGTACATTTCGGGAGATCGGTGCAAT CGATACTGCAGCATGATGTGAGCCTTGAACGTTGTCGTGGCATGAGAATG ACATAGCTACGTGATAGGCATAAGCCGGGTGTCGGTGATACTGCTGCCCG CAACCCCTGTCTTGGTCGTCTTTCCGACGATGTTAGTTTGCCGAAGGGCG TAGTTACATCCCCACTTCCGCTGCCCTACCGTTTACTATGGTCATGCTAC ATCGGAACTGGCAGATAACCGAAGAGGAGAGAAGCAGCGCTCGTCGAGCG CGGGTTCCCAAAAGCTGGGAAGCGTCCGCGCGAGGTGCTCACAGCGACAG CGTGCGGCTTACCCAGGATCTAGCGGCAGAGGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1128:8802..9788+

>mRNA_Ecto-sp9_F_contig1128.1099.1 ID=mRNA_Ecto-sp9_F_contig1128.1099.1|Name=mRNA_Ecto-sp9_F_contig1128.1099.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1128:8802..9788+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCGGTTCGAAAAGGGATCGCTGCTAGCGTTCACCTTCTTGCATAC
GCTAACGCTGGGGAACAACCGCATCGGCAATCTCCAGATGGTGCGGTTCG
AAAAGGGATCGCTGCTAGCGTTCACCTTCTTGCATACGCTAACGCTGGGG
AACAACCGCATCGGCAATCTCCAGGCAAGCCTGGGAGTCTTGCGGCTCAT
GCGACATCTGCGCTATCTAGAACTCTCCGGCAACCCCCTCGCGGAAGAAA
CCGGGTACCGCCTGCTTGTCATAAAAAATCTTCCCTGGTTGGAAACGCTG
GATATGCACAAGGCAAGCCTGGGAGTCTTGCGGCTCATGCGACATCTGCG
CTATCTAGAACTCTCCGGCAACCCCCTCGCGGAAGAAACCGGGTACCGCC
TGCTTGTCATAAAAAATCTTCCCTGGTTGGAAACGCTGGATATGCACAAG
ATAACCGAAGAGGAGAGAAGCAGCGCTCGTCGAGCGCGGGTTCCCAAAAG
CTGGGAAGCGTCCGCGCGAGGTGCTCACAGCGACAGCGTGCGGCTTACCC
AGGATCTAGCGGCAGAGGAGGCGATAACCGAAGAGGAGAGAAGCAGCGCT
CGTCGAGCGCGGGTTCCCAAAAGCTGGGAAGCGTCCGCGCGAGGTGCTCA
CAGCGACAGCGTGCGGCTTACCCAGGATCTAGCGGCAGAGGAGGCG
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