mRNA_Ecto-sp9_F_contig11279.1097.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11279.1097.1
Unique NamemRNA_Ecto-sp9_F_contig11279.1097.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11279.1097.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11279contigEcto-sp9_F_contig11279:3269..4007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size739
Cds size585
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.5140576-CDS-Ecto-sp9_F_contig11279:3268..38531622928371.5140576-CDS-Ecto-sp9_F_contig11279:3268..3853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11279 3269..3853 +
1692277849.7192063-CDS-Ecto-sp9_F_contig11279:3268..38531692277849.7192063-CDS-Ecto-sp9_F_contig11279:3268..3853Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11279 3269..3853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.5578923-UTR-Ecto-sp9_F_contig11279:3853..40071622928371.5578923-UTR-Ecto-sp9_F_contig11279:3853..4007Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11279 3854..4007 +
1692277849.7304647-UTR-Ecto-sp9_F_contig11279:3853..40071692277849.7304647-UTR-Ecto-sp9_F_contig11279:3853..4007Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11279 3854..4007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11279.1097.1prot_Ecto-sp9_F_contig11279.1097.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11279 3269..3853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11279.1097.1

>prot_Ecto-sp9_F_contig11279.1097.1 ID=prot_Ecto-sp9_F_contig11279.1097.1|Name=mRNA_Ecto-sp9_F_contig11279.1097.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=195bp
LLTSPDTAEPANPAVGCSHPQRDALVSQNTCRSGPSTCRLDPPQAYRLQQ
QPLRSPSLDSVNNWGVRVDPRPNQFLSLPPAPKKRRNVERNLGANGNWTM
GTGHKIYSRFALLLTPPHPRRTPSRLCRDVRSMSYRLRHALPLSMSTPPP
KKRRSLSTQQNLGANGNWIQYFNYISPSFSPPSSTHTSCSPYRH*
back to top

mRNA from alignment at Ecto-sp9_F_contig11279:3269..4007+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11279.1097.1 ID=mRNA_Ecto-sp9_F_contig11279.1097.1|Name=mRNA_Ecto-sp9_F_contig11279.1097.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=739bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11279:3269..4007+ (Ectocarpus species9 EcSCA_722f female)
CTGCTAACTTCTCCCGATACAGCGGAGCCGGCAAACCCAGCCGTCGGATG
CTCCCACCCCCAACGCGATGCTCTAGTGTCCCAAAACACCTGCCGGAGTG
GACCATCTACGTGTCGCTTGGACCCCCCCCAGGCCTACCGTTTACAGCAG
CAACCCTTGCGCTCACCCTCGCTTGATTCTGTCAACAACTGGGGGGTCCG
CGTGGACCCACGTCCCAATCAATTCTTGTCACTCCCACCCGCTCCCAAGA
AGCGCCGGAATGTCGAGAGAAACCTAGGAGCCAATGGGAACTGGACAATG
GGAACTGGACACAAGATTTATTCGCGTTTCGCCCTCCTCTTGACACCCCC
ACACCCCCGGCGTACTCCTTCCCGGCTTTGCAGGGATGTGAGGTCAATGT
CCTACCGACTACGGCATGCACTGCCATTGAGTATGAGTACACCCCCTCCC
AAAAAGCGCCGGAGTCTCTCCACTCAACAAAACCTAGGCGCCAATGGGAA
CTGGATACAATATTTTAATTATATTTCGCCGTCCTTCTCCCCCCCGTCAT
CAACGCACACGAGTTGTTCTCCCTACCGCCACTGATGACCCGCTTGCAAA
ATTCACACTCTCTCCCTACAGATGCAACTACATGTCGCGCAAGGAGCCCT
TACACTAACGTAAAACTCAGAATTTTTTTGAACAATTAAAACCACTCCCC
CACCGCACTACCCCCCCCCCCGCCGTCGATCGGGGTTGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11279:3269..4007+

>mRNA_Ecto-sp9_F_contig11279.1097.1 ID=mRNA_Ecto-sp9_F_contig11279.1097.1|Name=mRNA_Ecto-sp9_F_contig11279.1097.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11279:3269..4007+ (Ectocarpus species9 EcSCA_722f female)
CTGCTAACTTCTCCCGATACAGCGGAGCCGGCAAACCCAGCCGTCGGATG
CTCCCACCCCCAACGCGATGCTCTAGTGTCCCAAAACACCTGCCGGAGTG
GACCATCTACGTGTCGCTTGGACCCCCCCCAGGCCTACCGTTTACAGCAG
CAACCCTTGCGCTCACCCTCGCTTGATTCTGTCAACAACTGGGGGGTCCG
CGTGGACCCACGTCCCAATCAATTCTTGTCACTCCCACCCGCTCCCAAGA
AGCGCCGGAATGTCGAGAGAAACCTAGGAGCCAATGGGAACTGGACAATG
GGAACTGGACACAAGATTTATTCGCGTTTCGCCCTCCTCTTGACACCCCC
ACACCCCCGGCGTACTCCTTCCCGGCTTTGCAGGGATGTGAGGTCAATGT
CCTACCGACTACGGCATGCACTGCCATTGAGTATGAGTACACCCCCTCCC
AAAAAGCGCCGGAGTCTCTCCACTCAACAAAACCTAGGCGCCAATGGGAA
CTGGATACAATATTTTAATTATATTTCGCCGTCCTTCTCCCCCCCGTCAT
CAACGCACACGAGTTGTTCTCCCTACCGCCACTGACTGCTAACTTCTCCC
GATACAGCGGAGCCGGCAAACCCAGCCGTCGGATGCTCCCACCCCCAACG
CGATGCTCTAGTGTCCCAAAACACCTGCCGGAGTGGACCATCTACGTGTC
GCTTGGACCCCCCCCAGGCCTACCGTTTACAGCAGCAACCCTTGCGCTCA
CCCTCGCTTGATTCTGTCAACAACTGGGGGGTCCGCGTGGACCCACGTCC
CAATCAATTCTTGTCACTCCCACCCGCTCCCAAGAAGCGCCGGAATGTCG
AGAGAAACCTAGGAGCCAATGGGAACTGGACAATGGGAACTGGACACAAG
ATTTATTCGCGTTTCGCCCTCCTCTTGACACCCCCACACCCCCGGCGTAC
TCCTTCCCGGCTTTGCAGGGATGTGAGGTCAATGTCCTACCGACTACGGC
ATGCACTGCCATTGAGTATGAGTACACCCCCTCCCAAAAAGCGCCGGAGT
CTCTCCACTCAACAAAACCTAGGCGCCAATGGGAACTGGATACAATATTT
TAATTATATTTCGCCGTCCTTCTCCCCCCCGTCATCAACGCACACGAGTT
GTTCTCCCTACCGCCACTGA
back to top