mRNA_Ecto-sp9_F_contig11277.1096.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE) HSP 1 Score: 448 bits (1153), Expect = 2.220e-156 Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 1
Query: 7 TSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
TSVAGLPFLPVYAWVGLWTSAFLATLAFV ASNLIEFATQFTDDVFNALLS+NFIYEAARSLMRNF+PAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSV PVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ
Sbjct: 10 TSVAGLPFLPVYAWVGLWTSAFLATLAFVEASNLIEFATQFTDDVFNALLSLNFIYEAARSLMRNFNPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVPPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 241
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI) HSP 1 Score: 452 bits (1164), Expect = 1.220e-154 Identity = 230/234 (98.29%), Postives = 232/234 (99.15%), Query Frame = 1
Query: 1 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSW GLLSFLEVPNAFML KGRSW+VPMFSVTPVVRLACA+PAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ
Sbjct: 316 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWNGLLSFLEVPNAFMLSKGRSWVVPMFSVTPVVRLACAVPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 549
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: HCO3 (transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA) HSP 1 Score: 287 bits (735), Expect = 7.410e-93 Identity = 146/234 (62.39%), Postives = 180/234 (76.92%), Query Frame = 1
Query: 4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
FTS LPFLPVY+W G+WTS ++ LA GASNLI +ATQFTDDVFNALL+VNF++EA+RSL RNF GY ++GA ++LN+A+ TY RKT A +S +FN IREF+SD GP++VIV MS +P+ + + FL VP+ FMLC R W+ PM SV VR+ACA+PA+LLTSLFFLDQNIS+RVVNSP+H M K AYHQD+LVLG+ITG LSV+GLPWQCAATVQ
Sbjct: 20 FTSAMSLPFLPVYSWCGVWTSGYMLLLAMGGASNLIRYATQFTDDVFNALLAVNFLFEASRSLFRNFQD---GYNKSGAFLALNLALLTYTTTRKTVAARNSRYFNEEIREFLSDSGPVIVIVAMSLLTQVPALSSMGIEFLSVPSKFMLCGSRPWLSPMLSVPLNVRMACAVPAVLLTSLFFLDQNISSRVVNSPKHNMKKPPAYHQDLLVLGLITGTLSVLGLPWQCAATVQ 250
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Bicarbonate (transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.330e-82 Identity = 139/235 (59.15%), Postives = 172/235 (73.19%), Query Frame = 1
Query: 1 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
+FTS A LPFLPVY W GLWTSA + LA GASNL+ +ATQFTDDVFNAL+++NF+ EA L RNF AG + GAL+++NVA A+Y+ + + A S +FN G+RE +SDFGP++ I M+ LP+ + L FL VP +FML GR W+ P+ SV VRL C LPA+LLTSLFFLDQNISARVVN P HK+ K AYHQD+L LG+ITG+LSV+GLPWQCAATVQ
Sbjct: 118 AFTSAAALPFLPVYTWCGLWTSALMVALAAGGASNLVRYATQFTDDVFNALIALNFLAEACGGLARNFKLGGAGGS-GGALLAVNVAGASYLLTQALTQARGSVYFNKGVREQVSDFGPVLAIAAMTAVSHLPAVSSIGLDFLSVPASFMLQGGRGWLSPLLSVPVSVRLLCLLPALLLTSLFFLDQNISARVVNRPAHKLKKPPAYHQDLLTLGVITGVLSVLGLPWQCAATVQ 351
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC) HSP 1 Score: 239 bits (610), Expect = 2.560e-70 Identity = 124/227 (54.63%), Postives = 161/227 (70.93%), Query Frame = 1
Query: 22 LPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
LPF+P+Y+W GLWTS +L LA GA LI++ TQFTDDVFNALL+ NF+YEAA SL+ NF + G + G L+SLNVA+ATY R+ S + FFN IR +SDFGP++ I+ MS LP ++ + FL+VP +F L R W+V + V +RL LPA+LLT+LFFLD NIS RVVNSPR++M KG AY+QD+ LG +TG+LS++GLPW CAATVQ
Sbjct: 279 LPFMPLYSWTGLWTSLWLMLLAVAGAPELIKYCTQFTDDVFNALLACNFVYEAAASLLGNFMRS--GLDKTGPLLSLNVALATYFLARRLSLSYRWRFFNKNIRAILSDFGPVLTIISMSLVATLPLFRSI-EFLKVPLSFQLANNRPWLVRILDVPLYLRLIAILPAILLTALFFLDHNISIRVVNSPRNQMKKGVAYNQDLFALGAVTGVLSILGLPWMCAATVQ 502
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Probable (anion transporter n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6M5_CYAM1) HSP 1 Score: 223 bits (567), Expect = 4.850e-65 Identity = 116/230 (50.43%), Postives = 153/230 (66.52%), Query Frame = 1
Query: 16 AGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
AGLPFLP YAWVG+WT+ FL LA AS+LI + T+FTDD FNAL++ F+YEA RS+ NF T+A MSL++++ T++ R S S + +REF+SDFG + I M+ LP W G L L+VP F L RSW++P+F+ VRL +PA+LLT LFFLDQNI+ RVVNSP H++ KG AYH D+L+L +IT + S++GLPW CAATVQ
Sbjct: 248 AGLPFLPTYAWVGIWTAFFLFLLAIFNASSLIRYCTRFTDDCFNALIAATFLYEAFRSIGSNFRKCGMDKTEA--FMSLSLSLGTFIVGRTLSEFRQSRYLRRTVREFLSDFGAAIAIFSMTLVSQLPEWGGYTLGRLQVPVKFQLAGNRSWLIPIFAAPVQVRLFAIIPAILLTVLFFLDQNITVRVVNSPAHRLRKGEAYHLDLLILSLITLIASLLGLPWMCAATVQ 475
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Hypothetical (protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD95_9RHOD) HSP 1 Score: 220 bits (560), Expect = 8.460e-65 Identity = 114/235 (48.51%), Postives = 154/235 (65.53%), Query Frame = 1
Query: 1 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
SF GLPFLP+Y+WVGLWT A L L AS++I + T+FTDDVFN+L++ NF+YEA+RSL F + + T+ M+L++A+ TY+ R + + F +REF +DFGP + I MS LPS + + L L VP+ F L GR+W+VP+ +V R +PA+LLT LFFLDQNIS RVVNSP H + K AAYH D+L+L ++T + S+ GLPW CAATVQ
Sbjct: 172 SFCGRYGLPFLPMYSWVGLWTGAILFFLVIFNASDMIRYCTRFTDDVFNSLIATNFLYEASRSLASGFKSSGSDKTKP--FMALSLALGTYILGRSLAEFRRTRFLRRSVREFFADFGPTIAITAMSALSLLPSVRQISLETLAVPSTFQLANGRAWLVPLSAVAMPYRFLAIVPAILLTCLFFLDQNISVRVVNSPSHALKKPAAYHLDLLILSLVTVICSLFGLPWMCAATVQ 404
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Bicarbonate (transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWX8_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.880e-63 Identity = 117/234 (50.00%), Postives = 158/234 (67.52%), Query Frame = 1
Query: 4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSW-KGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
F ++ GLPF PVY+WVGLW S F L G+S LI + T+FTD++FNALLSV FIYEA S+ RNF A + ++L +A TY K + SS F + IR F+ +FGP+++ MS LPS+ K + L VP+ F L GR+++V + S+ V+L C+LPA+LLT+LFF+DQNIS RVVN+P +K+ KGAAY+ DM+ LG+ITG+LSV+GLPW C ATVQ
Sbjct: 261 FCTLKGLPFFPVYSWVGLWASFFFTFLGLGGSSQLIRYCTRFTDEIFNALLSVTFIYEAVVSIRRNFEEADP-HNLTTPFVALAMAYTTYRATDKAASFESSKFLDQRIRRFVKNFGPVIIFCAMSGLNCLPSFDKFHIRTLSVPDTFQLAGGRNFVVAINSIPNKVKLLCSLPAVLLTALFFMDQNISVRVVNNPDNKLKKGAAYNLDMVALGLITGVLSVLGLPWMCGATVQ 493
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB52_9STRA) HSP 1 Score: 211 bits (537), Expect = 4.990e-63 Identity = 117/234 (50.00%), Postives = 150/234 (64.10%), Query Frame = 1
Query: 4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
+ ++ G FLPVY WVGLWTS F+ L F GAS LI + T FTD++FN LLS+NFIYEA S+ RNF+ A +SL +A AT+ T SS +FN R + DFGP+ VI+ MS +P K + L VP+ L GR+ IVP SV +RL C LPA+LLT+L F+DQNIS RVVN+P++ + KG AY+ DM+VLG+ITG LS+ GLPW C ATVQ
Sbjct: 20 YCTLQGFAFLPVYTWVGLWTSLFMILLGFGGASKLIRYCTHFTDEIFNGLLSLNFIYEAWASIHRNFA-LADPINLTMPFVSLGIAFATFKATMGTVAFRSSKYFNEIFRTIIKDFGPVAVIILMSFVNQIPWIKKFGVPTLSVPSTLQLAGGRNLIVPFLSVPLSLRLKCMLPALLLTTLIFMDQNISVRVVNNPKNHLKKGEAYNIDMVVLGVITGFLSIAGLPWMCGATVQ 252
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ICK0_9STRA) HSP 1 Score: 210 bits (534), Expect = 1.300e-62 Identity = 117/236 (49.58%), Postives = 154/236 (65.25%), Query Frame = 1
Query: 4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWK--GLLSFLE-VPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
F +V +PF P+YAWVG+WTS F+ TL G+S LI + T+FTD+VFNALLS+NFIYEA SL RNF A + +SL +A+ T+ K + + FN IR + +FGP+ +I MS P K G+ + VP+ FML GR +++P S+ RL CALPA+LLTSLFF+DQNIS RVVN+P +K+ KG AY+ DM+ LGI+T LS+VGLPW C ATVQ
Sbjct: 20 FCTVQNVPFFPIYAWVGIWTSIFMVTLGAAGSSKLIRYCTRFTDEVFNALLSMNFIYEALASLRRNFLLVADPMNLSMPFVSLAMAIGTFWSTVKVTTMEQTILFNKRIRTNIKNFGPVSIIAIMSILNLHPWIKKFGIPTLSRSVPSRFMLAGGRDFLIPFRSIPITARLLCALPAVLLTSLFFMDQNISVRVVNNPDNKLRKGEAYNLDMIALGIVTLGLSLVGLPWMCGATVQ 255 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11277.1096.1 >prot_Ecto-sp9_F_contig11277.1096.1 ID=prot_Ecto-sp9_F_contig11277.1096.1|Name=mRNA_Ecto-sp9_F_contig11277.1096.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=234bp SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNAback to top mRNA from alignment at Ecto-sp9_F_contig11277:38..3421+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11277.1096.1 ID=mRNA_Ecto-sp9_F_contig11277.1096.1|Name=mRNA_Ecto-sp9_F_contig11277.1096.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3384bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11277:38..3421+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11277:38..3421+ >mRNA_Ecto-sp9_F_contig11277.1096.1 ID=mRNA_Ecto-sp9_F_contig11277.1096.1|Name=mRNA_Ecto-sp9_F_contig11277.1096.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1404bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11277:38..3421+ (Ectocarpus species9 EcSCA_722f female)back to top |