mRNA_Ecto-sp9_F_contig11277.1096.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11277.1096.1
Unique NamemRNA_Ecto-sp9_F_contig11277.1096.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE)

HSP 1 Score: 448 bits (1153), Expect = 2.220e-156
Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 1
Query:    7 TSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            TSVAGLPFLPVYAWVGLWTSAFLATLAFV ASNLIEFATQFTDDVFNALLS+NFIYEAARSLMRNF+PAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSV PVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ
Sbjct:   10 TSVAGLPFLPVYAWVGLWTSAFLATLAFVEASNLIEFATQFTDDVFNALLSLNFIYEAARSLMRNFNPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVPPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 241          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI)

HSP 1 Score: 452 bits (1164), Expect = 1.220e-154
Identity = 230/234 (98.29%), Postives = 232/234 (99.15%), Query Frame = 1
Query:    1 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSW GLLSFLEVPNAFML KGRSW+VPMFSVTPVVRLACA+PAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ
Sbjct:  316 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWNGLLSFLEVPNAFMLSKGRSWVVPMFSVTPVVRLACAVPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 549          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: HCO3 (transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA)

HSP 1 Score: 287 bits (735), Expect = 7.410e-93
Identity = 146/234 (62.39%), Postives = 180/234 (76.92%), Query Frame = 1
Query:    4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            FTS   LPFLPVY+W G+WTS ++  LA  GASNLI +ATQFTDDVFNALL+VNF++EA+RSL RNF     GY ++GA ++LN+A+ TY   RKT  A +S +FN  IREF+SD GP++VIV MS    +P+   + + FL VP+ FMLC  R W+ PM SV   VR+ACA+PA+LLTSLFFLDQNIS+RVVNSP+H M K  AYHQD+LVLG+ITG LSV+GLPWQCAATVQ
Sbjct:   20 FTSAMSLPFLPVYSWCGVWTSGYMLLLAMGGASNLIRYATQFTDDVFNALLAVNFLFEASRSLFRNFQD---GYNKSGAFLALNLALLTYTTTRKTVAARNSRYFNEEIREFLSDSGPVIVIVAMSLLTQVPALSSMGIEFLSVPSKFMLCGSRPWLSPMLSVPLNVRMACAVPAVLLTSLFFLDQNISSRVVNSPKHNMKKPPAYHQDLLVLGLITGTLSVLGLPWQCAATVQ 250          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Bicarbonate (transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.330e-82
Identity = 139/235 (59.15%), Postives = 172/235 (73.19%), Query Frame = 1
Query:    1 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            +FTS A LPFLPVY W GLWTSA +  LA  GASNL+ +ATQFTDDVFNAL+++NF+ EA   L RNF    AG +  GAL+++NVA A+Y+  +  + A  S +FN G+RE +SDFGP++ I  M+    LP+   + L FL VP +FML  GR W+ P+ SV   VRL C LPA+LLTSLFFLDQNISARVVN P HK+ K  AYHQD+L LG+ITG+LSV+GLPWQCAATVQ
Sbjct:  118 AFTSAAALPFLPVYTWCGLWTSALMVALAAGGASNLVRYATQFTDDVFNALIALNFLAEACGGLARNFKLGGAGGS-GGALLAVNVAGASYLLTQALTQARGSVYFNKGVREQVSDFGPVLAIAAMTAVSHLPAVSSIGLDFLSVPASFMLQGGRGWLSPLLSVPVSVRLLCLLPALLLTSLFFLDQNISARVVNRPAHKLKKPPAYHQDLLTLGVITGVLSVLGLPWQCAATVQ 351          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC)

HSP 1 Score: 239 bits (610), Expect = 2.560e-70
Identity = 124/227 (54.63%), Postives = 161/227 (70.93%), Query Frame = 1
Query:   22 LPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            LPF+P+Y+W GLWTS +L  LA  GA  LI++ TQFTDDVFNALL+ NF+YEAA SL+ NF  +  G  + G L+SLNVA+ATY   R+ S +    FFN  IR  +SDFGP++ I+ MS    LP ++ +  FL+VP +F L   R W+V +  V   +RL   LPA+LLT+LFFLD NIS RVVNSPR++M KG AY+QD+  LG +TG+LS++GLPW CAATVQ
Sbjct:  279 LPFMPLYSWTGLWTSLWLMLLAVAGAPELIKYCTQFTDDVFNALLACNFVYEAAASLLGNFMRS--GLDKTGPLLSLNVALATYFLARRLSLSYRWRFFNKNIRAILSDFGPVLTIISMSLVATLPLFRSI-EFLKVPLSFQLANNRPWLVRILDVPLYLRLIAILPAILLTALFFLDHNISIRVVNSPRNQMKKGVAYNQDLFALGAVTGVLSILGLPWMCAATVQ 502          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Probable (anion transporter n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6M5_CYAM1)

HSP 1 Score: 223 bits (567), Expect = 4.850e-65
Identity = 116/230 (50.43%), Postives = 153/230 (66.52%), Query Frame = 1
Query:   16 AGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            AGLPFLP YAWVG+WT+ FL  LA   AS+LI + T+FTDD FNAL++  F+YEA RS+  NF       T+A   MSL++++ T++  R  S    S +    +REF+SDFG  + I  M+    LP W G  L  L+VP  F L   RSW++P+F+    VRL   +PA+LLT LFFLDQNI+ RVVNSP H++ KG AYH D+L+L +IT + S++GLPW CAATVQ
Sbjct:  248 AGLPFLPTYAWVGIWTAFFLFLLAIFNASSLIRYCTRFTDDCFNALIAATFLYEAFRSIGSNFRKCGMDKTEA--FMSLSLSLGTFIVGRTLSEFRQSRYLRRTVREFLSDFGAAIAIFSMTLVSQLPEWGGYTLGRLQVPVKFQLAGNRSWLIPIFAAPVQVRLFAIIPAILLTVLFFLDQNITVRVVNSPAHRLRKGEAYHLDLLILSLITLIASLLGLPWMCAATVQ 475          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Hypothetical (protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD95_9RHOD)

HSP 1 Score: 220 bits (560), Expect = 8.460e-65
Identity = 114/235 (48.51%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            SF    GLPFLP+Y+WVGLWT A L  L    AS++I + T+FTDDVFN+L++ NF+YEA+RSL   F  + +  T+    M+L++A+ TY+  R  +    + F    +REF +DFGP + I  MS    LPS + + L  L VP+ F L  GR+W+VP+ +V    R    +PA+LLT LFFLDQNIS RVVNSP H + K AAYH D+L+L ++T + S+ GLPW CAATVQ
Sbjct:  172 SFCGRYGLPFLPMYSWVGLWTGAILFFLVIFNASDMIRYCTRFTDDVFNSLIATNFLYEASRSLASGFKSSGSDKTKP--FMALSLALGTYILGRSLAEFRRTRFLRRSVREFFADFGPTIAITAMSALSLLPSVRQISLETLAVPSTFQLANGRAWLVPLSAVAMPYRFLAIVPAILLTCLFFLDQNISVRVVNSPSHALKKPAAYHLDLLILSLVTVICSLFGLPWMCAATVQ 404          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Bicarbonate (transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWX8_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.880e-63
Identity = 117/234 (50.00%), Postives = 158/234 (67.52%), Query Frame = 1
Query:    4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSW-KGLLSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            F ++ GLPF PVY+WVGLW S F   L   G+S LI + T+FTD++FNALLSV FIYEA  S+ RNF  A   +      ++L +A  TY    K +   SS F +  IR F+ +FGP+++   MS    LPS+ K  +  L VP+ F L  GR+++V + S+   V+L C+LPA+LLT+LFF+DQNIS RVVN+P +K+ KGAAY+ DM+ LG+ITG+LSV+GLPW C ATVQ
Sbjct:  261 FCTLKGLPFFPVYSWVGLWASFFFTFLGLGGSSQLIRYCTRFTDEIFNALLSVTFIYEAVVSIRRNFEEADP-HNLTTPFVALAMAYTTYRATDKAASFESSKFLDQRIRRFVKNFGPVIIFCAMSGLNCLPSFDKFHIRTLSVPDTFQLAGGRNFVVAINSIPNKVKLLCSLPAVLLTALFFMDQNISVRVVNNPDNKLKKGAAYNLDMVALGLITGVLSVLGLPWMCGATVQ 493          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB52_9STRA)

HSP 1 Score: 211 bits (537), Expect = 4.990e-63
Identity = 117/234 (50.00%), Postives = 150/234 (64.10%), Query Frame = 1
Query:    4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGL-LSFLEVPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            + ++ G  FLPVY WVGLWTS F+  L F GAS LI + T FTD++FN LLS+NFIYEA  S+ RNF+  A         +SL +A AT+     T    SS +FN   R  + DFGP+ VI+ MS    +P  K   +  L VP+   L  GR+ IVP  SV   +RL C LPA+LLT+L F+DQNIS RVVN+P++ + KG AY+ DM+VLG+ITG LS+ GLPW C ATVQ
Sbjct:   20 YCTLQGFAFLPVYTWVGLWTSLFMILLGFGGASKLIRYCTHFTDEIFNGLLSLNFIYEAWASIHRNFA-LADPINLTMPFVSLGIAFATFKATMGTVAFRSSKYFNEIFRTIIKDFGPVAVIILMSFVNQIPWIKKFGVPTLSVPSTLQLAGGRNLIVPFLSVPLSLRLKCMLPALLLTTLIFMDQNISVRVVNNPKNHLKKGEAYNIDMVVLGVITGFLSIAGLPWMCGATVQ 252          
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ICK0_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.300e-62
Identity = 117/236 (49.58%), Postives = 154/236 (65.25%), Query Frame = 1
Query:    4 FTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWK--GLLSFLE-VPNAFMLCKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKMTKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ 702
            F +V  +PF P+YAWVG+WTS F+ TL   G+S LI + T+FTD+VFNALLS+NFIYEA  SL RNF   A     +   +SL +A+ T+    K +    +  FN  IR  + +FGP+ +I  MS     P  K  G+ +    VP+ FML  GR +++P  S+    RL CALPA+LLTSLFF+DQNIS RVVN+P +K+ KG AY+ DM+ LGI+T  LS+VGLPW C ATVQ
Sbjct:   20 FCTVQNVPFFPIYAWVGIWTSIFMVTLGAAGSSKLIRYCTRFTDEVFNALLSMNFIYEALASLRRNFLLVADPMNLSMPFVSLAMAIGTFWSTVKVTTMEQTILFNKRIRTNIKNFGPVSIIAIMSILNLHPWIKKFGIPTLSRSVPSRFMLAGGRDFLIPFRSIPITARLLCALPAVLLTSLFFMDQNISVRVVNNPDNKLRKGEAYNLDMIALGIVTLGLSLVGLPWMCGATVQ 255          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11277.1096.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.220e-15698.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.220e-15498.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
HCO37.410e-9362.39transporter family-domain-containing protein n=1 T... [more]
Bicarbonate1.330e-8259.15transporter n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Uncharacterized2.560e-7054.63protein n=1 Tax=Vitrella brassicaformis (strain CC... [more]
Probable4.850e-6550.43anion transporter n=1 Tax=Cyanidioschyzon merolae ... [more]
Hypothetical8.460e-6548.51protein n=1 Tax=Compsopogon caeruleus TaxID=31354 ... [more]
Bicarbonate1.880e-6350.00transporter n=1 Tax=Fragilariopsis cylindrus CCMP1... [more]
Hypothetical4.990e-6350.00protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical1.300e-6249.58protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11277contigEcto-sp9_F_contig11277:38..3421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue3.3e-124
Seed eggNOG ortholog2880.D7G110
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionBicarbonate transporter, eukaryotic
Ec32 orthologEc-22_001570.1
Exons5
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11277.1096.1prot_Ecto-sp9_F_contig11277.1096.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11277 38..3421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.4125457-CDS-Ecto-sp9_F_contig11277:37..2141622928371.4125457-CDS-Ecto-sp9_F_contig11277:37..214Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 38..214 +
1692277849.6666212-CDS-Ecto-sp9_F_contig11277:37..2141692277849.6666212-CDS-Ecto-sp9_F_contig11277:37..214Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 38..214 +
1622928371.4296243-CDS-Ecto-sp9_F_contig11277:1282..14321622928371.4296243-CDS-Ecto-sp9_F_contig11277:1282..1432Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 1283..1432 +
1692277849.6782126-CDS-Ecto-sp9_F_contig11277:1282..14321692277849.6782126-CDS-Ecto-sp9_F_contig11277:1282..1432Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 1283..1432 +
1622928371.4449975-CDS-Ecto-sp9_F_contig11277:2126..22281622928371.4449975-CDS-Ecto-sp9_F_contig11277:2126..2228Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 2127..2228 +
1692277849.687703-CDS-Ecto-sp9_F_contig11277:2126..22281692277849.687703-CDS-Ecto-sp9_F_contig11277:2126..2228Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 2127..2228 +
1622928371.462369-CDS-Ecto-sp9_F_contig11277:2738..28461622928371.462369-CDS-Ecto-sp9_F_contig11277:2738..2846Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 2739..2846 +
1692277849.6999972-CDS-Ecto-sp9_F_contig11277:2738..28461692277849.6999972-CDS-Ecto-sp9_F_contig11277:2738..2846Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 2739..2846 +
1622928371.4761894-CDS-Ecto-sp9_F_contig11277:3256..34211622928371.4761894-CDS-Ecto-sp9_F_contig11277:3256..3421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 3257..3421 +
1692277849.7107341-CDS-Ecto-sp9_F_contig11277:3256..34211692277849.7107341-CDS-Ecto-sp9_F_contig11277:3256..3421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11277 3257..3421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11277.1096.1

>prot_Ecto-sp9_F_contig11277.1096.1 ID=prot_Ecto-sp9_F_contig11277.1096.1|Name=mRNA_Ecto-sp9_F_contig11277.1096.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=234bp
SFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNA
LLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGA
LSSTFFNGGIREFMSDFGPLVVIVGMSCFCALPSWKGLLSFLEVPNAFML
CKGRSWIVPMFSVTPVVRLACALPAMLLTSLFFLDQNISARVVNSPRHKM
TKGAAYHQDMLVLGIITGLLSVVGLPWQCAATVQ
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mRNA from alignment at Ecto-sp9_F_contig11277:38..3421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11277.1096.1 ID=mRNA_Ecto-sp9_F_contig11277.1096.1|Name=mRNA_Ecto-sp9_F_contig11277.1096.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3384bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11277:38..3421+ (Ectocarpus species9 EcSCA_722f female)
AGCTTCACGTCCGTGGCGGGGCTGCCGTTCTTGCCAGTGTATGCGTGGGT GGGGCTGTGGACGTCGGCGTTCTTGGCAACGCTGGCCTTCGTGGGGGCTT CGAACCTGATCGAGTTCGCGACGCAGTTCACGGACGACGTGTTCAACGCG CTTCTCTCGGTCAACTTCATCTACGAGGTGACGATGCCGAAGGGATACGT CTGCTATAGACCGAGAGAGAGAATAAACACATGTATCAGGATGCTCTCTG CGTCAACTTCATCGACGAGGTGATGATCCGGAGGGCTACAGATGGGGAGA GAGAGAGTGAGAGAGAGCAAACATATGTACCAACATGTTTTGGGGGGGCG GGGGCGGGTAGGGTTGATGGCTATTGTTTCGGCGCTATATGTTCGTAAAC AATAGCACCACGATGTTCATTTGTGGGGTTTTAATGATAGGAAAACGTTG TGTCAGTGCTTTGTCTTCGTAAGCATAAGTCCGGGATGTTTTGGGGGGAG AGAGGTTAGTCCGGCGACCCTGTTTTAGTGGTTTGTCTTGAGAGAAGTGA CACCAGGCATGTCCCAAGCACTTGACCGCAGACAGTGGTGTTAGAATGAT GAACCAACATTTGTATTCCCAAATAACGGTATGTGTGGCACAAGGGCGTC TCCATCGCAGTTCTTCCCGCCAAGTACAACCGTATTTTGCATGGAGGTAA TGAGAGGCGAAACATGAAAACCTGCACAAGTGACGGCGATGAAAATCAAA CCAATAGAAGGATTAGTTATCGATCTTGAGTATTAGCACTTCATAGAGGG CGGTTGCAATATTTCGAAGCGATTGGAATGTTGTCGTGCGAAGCGGAGCG GAGTGTTGGCGATCACATGGGAGAAGCAAGCAACGAAAGCGCGAAACAAG AGTTGGACAACCCTCTCGCTCGAAAACAAGCTATCACACACTTTACATAG GCGAATGACGTTGACACGTTGGCGGCTACATGAATCCTTAACCGTGCTGT GTGTCAATTGACGGACATGTGATCGGATTGAGCCTCTGCGGGGTCCAGCG CTGTAACTCGTGTTTTTTATTTATTGCTATTTTCGTTGTGGTGTACAAGC ATCGTTTCCAAGTTTTGACTGCATGATCACGACACTTTTCCCCACTGGCG AAACCGTCGATTATTATCACCCTTTTGTTTTTTGAACAACGCTCGTCAAG TCAACCATGTCAGAGAGCTGATGATGCGCCCGCTCTTGCCCGCAGGCCGC GCGGTCTCTGATGCGGAACTTCAGCCCCGCTGCGGCCGGATACACCCAGG CCGGCGCGCTGATGAGCCTGAACGTTGCGGTGGCGACGTACGTGGGATGC CGCAAGACATCGGGGGCCCTAAGCTCGACATTTTTTAACGGCGGGGTGAG AGCAGGATGATAAATAAGAATCGCGTTGTCGTTTGCGAATTGGGAGGTGG TTCGGAAGAAATGGGCCGACCAAGGTTGTTGTGATAGATAAAGCTGTGGG GTTGGAAGTGTGTAGATGGATGGGATAAAGCTGTGGGGTTGGAAGTGTGT AGATGGATGGGAATAAAGCTCGTGGGGTTGAAGTGTGTAGATGGATGGGG AATGTGTGTCGTGGTTTGTGATGGCGGCGGTGTTGTTTAATCACTGACTG CTGTTGTAGTGGAGGTGCATGGCTGTGTTTGTACACGCGCCGTGAGGACC GCGCCCAAGCCTTAATCAACCTCACGTACGACGTTCTCAAACTCATCGCA CCCTCTTCCATGCCCAAGCGGAAAACCGAGCATGCGTCACCAACCGCCGG CCACTGCTGCTGCAGCCTCACCCTCAAAATTGGTCTCGAATCAGCACAAC AAATGTCGAGGGCACCACACAAGTACCTGTAGGCCTGGGATACAGGCCAT TGATGGGCACTTTTCGCGAGCTCTCCGTGTCCACCAGCTTACACCCCGTG AATTTGTTTATTTTGAGAGGATGAGGAAATATCGCCAACTCATCCCCTGC CGCCGCCCCCGCCCTCGCCTTCACTGCTGATTATTCGGGGTGTTTCCCGA AATGCTGTATTGTTGTTTTCCTTGCTGTGCTTACGCTAGATTCGCGAGTT CATGTCAGACTTCGGACCTTTGGTGGTGATCGTGGGCATGTCGTGCTTCT GCGCCCTCCCGTCATGGAAGGGTCTGCTGAGCTTCCTCGAGGTGGGTGGA TTCTTCCGCAGGTTGTCCCGCAGATATCCCACGGGTTGTTCCTCGGAATG TTGTTGTTCCGCGTTCTGTTCCGCGGGTTGTTCCGCAATAGTAGGCGCTT TGGGTAGAACCAGCCGCCACTGGGTGACCCACTCATCCGTGTCTGCGTGT GGGTGTGTTCCCTTGGTGTTCCCTTGTCACGGATACGCTTGGGCCGTCTT GTGAGGGAGGGGGCGGCAGAGCAGATGATAAAAACATACGTACCCGAACT TGACCAAACGGTTTGTTGAACTTGTTGACGCTTACGTTGTGTGGTTTTGT CCCTGCTTAGTTCAGTTGAAGTATGCGGGATGTGATGTGTAATCGGTCTC TGATGTTGTAACGGTTTCTTCGAGAGCGAGTACGCAGCCACACCGTTTGC GAGGACGACGACGGTGACGATGATCGCTCCGCCCAGTCGGGTTTCTTCAC GTGCTTCATGCATACTGCATCGCCTTTGCCCTCACTCTTATCTTGCAAAA GGTGCCGAACGCCTTCATGCTGTGTAAGGGCCGTTCCTGGATAGTTCCCA TGTTCTCCGTCACGCCGGTGGTGAGGCTGGCCTGCGCTCTCCCAGCCATG TTGCTCACGGTAAGAGGCCGAATTCCGCATGTATCATGCCACCCCCCCCC CCCCCCCCCCGCCATGCCCGGTAACGACTTTTCACATTGGATTCCTCCAA AATGGTGAATGATGGAACTGTAGATCTGGCGGTTCGCCGAGCACAATGCC AACGGTTTGTTCCTAAGAGGTTAGACCGCCGTTTTAGCCTCAGCACCCTT CGGGTCACGAAGAAATTTAGCACACACAATGTACACCCCCCGCCGCCCGT ACCCGCCCGGATCGCCACCGCTCATGATATTCCTCCGCTCTCGCCTTCCC TACCTACTACTGGTACGCGCTCTTGTCAATCTTGTGGCTACTGTTGCCAC CCACTCATGATTTTCCTCCGCTCTCGTCGTCCCTGCGACTGGTATTTACC CCTTCTGCGCCCCCCCCAGTCTCTCTTTTTCTTAGACCAAAACATCTCGG CTAGGGTGGTGAACTCCCCGCGGCACAAGATGACAAAGGGCGCCGCCTAC CACCAGGACATGCTGGTGCTCGGGATAATCACCGGCCTCTTGTCGGTGGT TGGGCTGCCGTGGCAATGCGCCGCTACCGTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11277:38..3421+

>mRNA_Ecto-sp9_F_contig11277.1096.1 ID=mRNA_Ecto-sp9_F_contig11277.1096.1|Name=mRNA_Ecto-sp9_F_contig11277.1096.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1404bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11277:38..3421+ (Ectocarpus species9 EcSCA_722f female)
AGCTTCACGTCCGTGGCGGGGCTGCCGTTCTTGCCAGTGTATGCGTGGGT
GGGGCTGTGGACGTCGGCGTTCTTGGCAACGCTGGCCTTCGTGGGGGCTT
CGAACCTGATCGAGTTCGCGACGCAGTTCACGGACGACGTGTTCAACGCG
CTTCTCTCGGTCAACTTCATCTACGAGAGCTTCACGTCCGTGGCGGGGCT
GCCGTTCTTGCCAGTGTATGCGTGGGTGGGGCTGTGGACGTCGGCGTTCT
TGGCAACGCTGGCCTTCGTGGGGGCTTCGAACCTGATCGAGTTCGCGACG
CAGTTCACGGACGACGTGTTCAACGCGCTTCTCTCGGTCAACTTCATCTA
CGAGGCCGCGCGGTCTCTGATGCGGAACTTCAGCCCCGCTGCGGCCGGAT
ACACCCAGGCCGGCGCGCTGATGAGCCTGAACGTTGCGGTGGCGACGTAC
GTGGGATGCCGCAAGACATCGGGGGCCCTAAGCTCGACATTTTTTAACGG
CGGGGCCGCGCGGTCTCTGATGCGGAACTTCAGCCCCGCTGCGGCCGGAT
ACACCCAGGCCGGCGCGCTGATGAGCCTGAACGTTGCGGTGGCGACGTAC
GTGGGATGCCGCAAGACATCGGGGGCCCTAAGCTCGACATTTTTTAACGG
CGGGATTCGCGAGTTCATGTCAGACTTCGGACCTTTGGTGGTGATCGTGG
GCATGTCGTGCTTCTGCGCCCTCCCGTCATGGAAGGGTCTGCTGAGCTTC
CTCGAGATTCGCGAGTTCATGTCAGACTTCGGACCTTTGGTGGTGATCGT
GGGCATGTCGTGCTTCTGCGCCCTCCCGTCATGGAAGGGTCTGCTGAGCT
TCCTCGAGGTGCCGAACGCCTTCATGCTGTGTAAGGGCCGTTCCTGGATA
GTTCCCATGTTCTCCGTCACGCCGGTGGTGAGGCTGGCCTGCGCTCTCCC
AGCCATGTTGCTCACGGTGCCGAACGCCTTCATGCTGTGTAAGGGCCGTT
CCTGGATAGTTCCCATGTTCTCCGTCACGCCGGTGGTGAGGCTGGCCTGC
GCTCTCCCAGCCATGTTGCTCACGTCTCTCTTTTTCTTAGACCAAAACAT
CTCGGCTAGGGTGGTGAACTCCCCGCGGCACAAGATGACAAAGGGCGCCG
CCTACCACCAGGACATGCTGGTGCTCGGGATAATCACCGGCCTCTTGTCG
GTGGTTGGGCTGCCGTGGCAATGCGCCGCTACCGTGCAGTCTCTCTTTTT
CTTAGACCAAAACATCTCGGCTAGGGTGGTGAACTCCCCGCGGCACAAGA
TGACAAAGGGCGCCGCCTACCACCAGGACATGCTGGTGCTCGGGATAATC
ACCGGCCTCTTGTCGGTGGTTGGGCTGCCGTGGCAATGCGCCGCTACCGT
GCAG
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