mRNA_Ecto-sp9_F_contig11272.1094.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L724_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.750e-60 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 7 QEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLI 297
+EQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLI
Sbjct: 227 EEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLI 323
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI) HSP 1 Score: 198 bits (503), Expect = 8.570e-57 Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1
Query: 7 QEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ 300
+EQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ
Sbjct: 2132 KEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ 2229
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6F5_9ARCH) HSP 1 Score: 109 bits (273), Expect = 2.760e-29 Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 16 MGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLL 276
MG VQIWP EKA PVG R PN+ PFLPPP GR++FSLNPFVMGSEL GP +CAKI C CV+ LL+++F FFN+++
Sbjct: 1 MGSICYSVQIWPKEKALAMPVGAARTSPNTNPFLPPPVGRMQFSLNPFVMGSELCGPVLCAKIFCCMMCVVFCLLMIFFQPFFNIVI 87
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q7_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.890e-25 Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 4 VQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALS 291
V+ QMGK +G+++ P A+ +P G GRNDPNS P LPPP GR++FSLNPFVMG+EL GPK+CA++ C C+ + LL++ NL + L
Sbjct: 15 VRNQMGKMCIGLKLLPKSIADKEPAGFGRNDPNSNPTLPPPVGRMKFSLNPFVMGAELCGPKLCAQLTCCLVCLGVMALLIFCQPVLNLFIAIFLG 110
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZE1_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.280e-24 Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1
Query: 4 VQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFN 267
++ +MGK +G+ I P A P G GR DPN+ P+LPPP+GRL+FSLNPFVMGSEL GPK+CA++ C C ILL+++ S FN
Sbjct: 49 IRTKMGKLNIGIHIVPKTIASSIPAGLGRTDPNANPYLPPPSGRLKFSLNPFVMGSELCGPKLCAQLTCCLICTAIILLMIFCSPVFN 136
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D049_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.690e-24 Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 4 VQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLL 276
+++ MGK + +QI P+ AE+ P G G+ DPNS PFLPPP GR++FSLNPFVMGSEL GPK+CA AC C++ +LLL++ + NL+L
Sbjct: 1754 IRDAMGKVCIRLQIVPLIIAEVTPAGFGQTDPNSNPFLPPPQGRMKFSLNPFVMGSELCGPKLCAYFACCLLCIVIVLLLIFCNPLLNLVL 1844
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKT2_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.810e-24 Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLLTFA 285
+V+E MG + +++ P+EKA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GP IC K+ C C C+++I+ +YF G F NLL+ A
Sbjct: 466 NVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMC-CLCLVAIMAAMYFLGPFMNLLIVLA 560
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKQ4_9STRA) HSP 1 Score: 103 bits (258), Expect = 9.370e-24 Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLLTFA 285
+V+E MG + +++ P+EKA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GP IC K+ C C C+++I+ +YF G F NLL+ A
Sbjct: 1700 NVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMC-CLCLVAIMAAMYFLGPFMNLLIVLA 1794
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F1_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.240e-23 Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLLTFA 285
+V+E MG + +++ P+EKA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GP IC K+ C C C+++I+ +YF G F NLL+ A
Sbjct: 720 NVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICHKVMC-CLCLVAIMAAMYFLGPFMNLLIVLA 814
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BA36_9STRA) HSP 1 Score: 101 bits (251), Expect = 8.130e-23 Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLL 276
+V+E MG + +++ PI+KA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GPKIC K C C C++ ++ +YF G F NL++
Sbjct: 1009 NVKEPMGAVCISMELVPIDKAKIQTVGFGRSDPNNGPFLPPPAGRLKFSMNPFYVFNELLGPKICRKFMC-CLCIVIVMAAMYFLGPFMNLII 1100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11272.1094.1 >prot_Ecto-sp9_F_contig11272.1094.1 ID=prot_Ecto-sp9_F_contig11272.1094.1|Name=mRNA_Ecto-sp9_F_contig11272.1094.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp MGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMback to top mRNA from alignment at Ecto-sp9_F_contig11272:3387..3689- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11272.1094.1 ID=mRNA_Ecto-sp9_F_contig11272.1094.1|Name=mRNA_Ecto-sp9_F_contig11272.1094.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11272:3387..3689- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11272:3387..3689- >mRNA_Ecto-sp9_F_contig11272.1094.1 ID=mRNA_Ecto-sp9_F_contig11272.1094.1|Name=mRNA_Ecto-sp9_F_contig11272.1094.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11272:3387..3689- (Ectocarpus species9 EcSCA_722f female)back to top |