mRNA_Ecto-sp9_F_contig11272.1094.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11272.1094.1
Unique NamemRNA_Ecto-sp9_F_contig11272.1094.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L724_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.750e-60
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
Query:    7 QEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLI 297
            +EQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLI
Sbjct:  227 EEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLI 323          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 8.570e-57
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    7 QEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ 300
            +EQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ
Sbjct: 2132 KEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ 2229          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6F5_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 2.760e-29
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   16 MGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLL 276
            MG     VQIWP EKA   PVG  R  PN+ PFLPPP GR++FSLNPFVMGSEL GP +CAKI C   CV+  LL+++F  FFN+++
Sbjct:    1 MGSICYSVQIWPKEKALAMPVGAARTSPNTNPFLPPPVGRMQFSLNPFVMGSELCGPVLCAKIFCCMMCVVFCLLMIFFQPFFNIVI 87          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2Q7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.890e-25
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    4 VQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALS 291
            V+ QMGK  +G+++ P   A+ +P G GRNDPNS P LPPP GR++FSLNPFVMG+EL GPK+CA++ C   C+  + LL++     NL +   L 
Sbjct:   15 VRNQMGKMCIGLKLLPKSIADKEPAGFGRNDPNSNPTLPPPVGRMKFSLNPFVMGAELCGPKLCAQLTCCLVCLGVMALLIFCQPVLNLFIAIFLG 110          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZE1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.280e-24
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    4 VQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFN 267
            ++ +MGK  +G+ I P   A   P G GR DPN+ P+LPPP+GRL+FSLNPFVMGSEL GPK+CA++ C   C   ILL+++ S  FN
Sbjct:   49 IRTKMGKLNIGIHIVPKTIASSIPAGLGRTDPNANPYLPPPSGRLKFSLNPFVMGSELCGPKLCAQLTCCLICTAIILLMIFCSPVFN 136          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D049_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.690e-24
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    4 VQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLL 276
            +++ MGK  + +QI P+  AE+ P G G+ DPNS PFLPPP GR++FSLNPFVMGSEL GPK+CA  AC   C++ +LLL++ +   NL+L
Sbjct: 1754 IRDAMGKVCIRLQIVPLIIAEVTPAGFGQTDPNSNPFLPPPQGRMKFSLNPFVMGSELCGPKLCAYFACCLLCIVIVLLLIFCNPLLNLVL 1844          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKT2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.810e-24
Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLLTFA 285
            +V+E MG   + +++ P+EKA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GP IC K+ C C C+++I+  +YF G F NLL+  A
Sbjct:  466 NVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMC-CLCLVAIMAAMYFLGPFMNLLIVLA 560          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKQ4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.370e-24
Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLLTFA 285
            +V+E MG   + +++ P+EKA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GP IC K+ C C C+++I+  +YF G F NLL+  A
Sbjct: 1700 NVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICRKVMC-CLCLVAIMAAMYFLGPFMNLLIVLA 1794          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.240e-23
Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLLTFA 285
            +V+E MG   + +++ P+EKA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GP IC K+ C C C+++I+  +YF G F NLL+  A
Sbjct:  720 NVKEPMGAVCISMELVPVEKAKIQAVGFGRSDPNNTPFLPPPAGRLKFSMNPFYVFNELLGPAICHKVMC-CLCLVAIMAAMYFLGPFMNLLIVLA 814          
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BA36_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.130e-23
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    1 HVQEQMGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVMGSELFGPKICAKIACVCCCVISILLLVYFSG-FFNLLL 276
            +V+E MG   + +++ PI+KA++Q VG GR+DPN+ PFLPPPAGRL+FS+NPF + +EL GPKIC K  C C C++ ++  +YF G F NL++
Sbjct: 1009 NVKEPMGAVCISMELVPIDKAKIQTVGFGRSDPNNGPFLPPPAGRLKFSMNPFYVFNELLGPKICRKFMC-CLCIVIVMAAMYFLGPFMNLII 1100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11272.1094.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.750e-6098.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.570e-5798.98protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.760e-2958.62protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Hypothetical7.890e-2548.96protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.280e-2453.41protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical3.690e-2453.85protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized7.810e-2452.08protein n=1 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized9.370e-2452.08protein n=9 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized1.240e-2352.08protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized8.130e-2351.61protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11272contigEcto-sp9_F_contig11272:3387..3689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5e-47
Seed eggNOG ortholog2880.D8LF87
KEGG koko:K19949,ko:K22125,ko:K22127
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1030@1,KOG1030@2759,KOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size303
Cds size288
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.2579942-CDS-Ecto-sp9_F_contig11272:3386..36741622928371.2579942-CDS-Ecto-sp9_F_contig11272:3386..3674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11272 3387..3674 -
1692277849.604883-CDS-Ecto-sp9_F_contig11272:3386..36741692277849.604883-CDS-Ecto-sp9_F_contig11272:3386..3674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11272 3387..3674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.277757-UTR-Ecto-sp9_F_contig11272:3674..36891622928371.277757-UTR-Ecto-sp9_F_contig11272:3674..3689Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11272 3675..3689 -
1692277849.6172473-UTR-Ecto-sp9_F_contig11272:3674..36891692277849.6172473-UTR-Ecto-sp9_F_contig11272:3674..3689Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11272 3675..3689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11272.1094.1prot_Ecto-sp9_F_contig11272.1094.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11272 3387..3674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11272.1094.1

>prot_Ecto-sp9_F_contig11272.1094.1 ID=prot_Ecto-sp9_F_contig11272.1094.1|Name=mRNA_Ecto-sp9_F_contig11272.1094.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
MGKCLMGVQIWPIEKAELQPVGNGRNDPNSQPFLPPPAGRLRFSLNPFVM
GSELFGPKICAKIACVCCCVISILLLVYFSGFFNLLLTFALSLIQ*
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mRNA from alignment at Ecto-sp9_F_contig11272:3387..3689-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11272.1094.1 ID=mRNA_Ecto-sp9_F_contig11272.1094.1|Name=mRNA_Ecto-sp9_F_contig11272.1094.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11272:3387..3689- (Ectocarpus species9 EcSCA_722f female)
CACGTACAGGAACAAATGGGCAAGTGCTTGATGGGCGTCCAGATTTGGCC CATCGAGAAGGCGGAGCTGCAGCCAGTCGGCAACGGCCGGAACGACCCCA ACAGCCAGCCCTTCCTGCCGCCGCCGGCGGGGCGCCTGCGGTTCAGCCTG AACCCCTTCGTGATGGGGTCGGAACTCTTCGGGCCGAAGATCTGCGCCAA GATCGCGTGCGTGTGCTGCTGCGTGATCAGCATCCTTCTCCTCGTGTACT TCAGCGGGTTCTTCAACCTGCTCCTCACGTTCGCGCTTAGCCTCATCCAA TAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11272:3387..3689-

>mRNA_Ecto-sp9_F_contig11272.1094.1 ID=mRNA_Ecto-sp9_F_contig11272.1094.1|Name=mRNA_Ecto-sp9_F_contig11272.1094.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11272:3387..3689- (Ectocarpus species9 EcSCA_722f female)
ATGGGCAAGTGCTTGATGGGCGTCCAGATTTGGCCCATCGAGAAGGCGGA
GCTGCAGCCAGTCGGCAACGGCCGGAACGACCCCAACAGCCAGCCCTTCC
TGCCGCCGCCGGCGGGGCGCCTGCGGTTCAGCCTGAACCCCTTCGTGATG
GGGTCGGAACTCTTCGGGCCGAAGATCTGCGCCAAGATCGCGTGCGTGTG
CTGCTGCGTGATCAGCATCCTTCTCCTCGTGTACTTCAGCGGGTTCTTCA
ACCTGCTCCTCACGTTCGCGCTTAGCCTCATCCAATAAATGGGCAAGTGC
TTGATGGGCGTCCAGATTTGGCCCATCGAGAAGGCGGAGCTGCAGCCAGT
CGGCAACGGCCGGAACGACCCCAACAGCCAGCCCTTCCTGCCGCCGCCGG
CGGGGCGCCTGCGGTTCAGCCTGAACCCCTTCGTGATGGGGTCGGAACTC
TTCGGGCCGAAGATCTGCGCCAAGATCGCGTGCGTGTGCTGCTGCGTGAT
CAGCATCCTTCTCCTCGTGTACTTCAGCGGGTTCTTCAACCTGCTCCTCA
CGTTCGCGCTTAGCCTCATCCAATAA
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