mRNA_Ecto-sp9_F_contig11270.1093.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11270.1093.1
Unique NamemRNA_Ecto-sp9_F_contig11270.1093.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB92_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.920e-48
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1
Query:    7 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
            AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVE 
Sbjct:   44 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEA 135          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.380e-24
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 VAAMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
            VAA+E+TFAR+RQATGV++LE+MV K+ANQ+ N  TLE E+RE E + A  +  ++  + RF  MKASGVG+TELNRDISDKL  + + YR EV
Sbjct:   42 VAALEATFARVRQATGVHSLEDMVAKIANQAANRETLEREEREVERRAAAVRHRQEELEQRFCDMKASGVGSTELNRDISDKLKAEAESYRAEV 135          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX70_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-19
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRV 276
            ME  F +IRQATGVNTLE+MV K   Q TN   L EE+REAE +LA AK  +++ + RF  +K SG+G TELNRDI+D LN+ I E+R 
Sbjct:  127 MEEAFVQIRQATGVNTLEQMVEKFKEQGTNRTGLLEERREAEDRLADAKRKKEAAEERFMELKQSGIGGTELNRDITDTLNSTILEHRA 215          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B1A3_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 4.430e-17
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    4 AAMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
            A +E+ F  I++ATGVNTLEEMV K   Q  N A+LEEEK +AE +LA+ K  +++ + RF+ +KASG G TEL+R+  DK++ +I E + ++
Sbjct:   39 AELENAFLDIKKATGVNTLEEMVEKFLGQGANRASLEEEKADAEDRLAKVKAQKEAAERRFAELKASGAGETELSRETYDKMDKEIAEVKAQL 131          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CUQ0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.420e-17
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
            +E  F ++RQATGVN+LEEMV K   Q  N   L +E+++ E +LA AK  ++  + RFS +KASG+G+TELNR+ISD+LN+ I   R+E+
Sbjct:  223 LEEQFTQVRQATGVNSLEEMVDKFVGQEGNRNALIDERKDVEGRLADAKRRKEEAEQRFSELKASGIGSTELNREISDELNHKILSGRMEL 313          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8D6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
            ++  F+ +R+ TGVN+L E+V K+  Q  N   L  EKR+A+S+LA AK+ R+  + RFS ++ASG+G TE+NRD++D L  DI   R E+
Sbjct:  321 LDEDFSEVRKVTGVNSLAEVVEKIKKQKENKKQLVLEKRDADSRLAGAKQMREKLEKRFSELRASGIGTTEMNRDVADDLEKDIDTARAEL 411          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKC9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.250e-13
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    7 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVE 279
            ++E +FA I++ATGVN+L EMV K  N   +   L EEKREAE +L+  K + +    ++  +KA+G G+TELNR I + ++N I + RVE
Sbjct:   11 SLEESFAYIKRATGVNSLAEMVEKFTNHQEHRDRLLEEKREAEERLSSTKTSLEQAHEKYDQIKANGFGDTELNRQIIEDIDNSITKERVE 101          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Ryanodine (receptor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZS7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-12
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 VAAMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
            V+  E  F  IR+ATGV +L+EMV K   QS N   L EEK E E +  + KE      T F+  KA+G+G +ELNR++ DKL+N+I E R E+
Sbjct: 1902 VSTYEEAFNAIREATGVRSLDEMVEKFLGQSANKQALVEEKFEVEQRQRKLKEELARVQTEFAEFKAAGIGGSELNREMYDKLDNEILEARHEL 1995          
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0B0_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 2.430e-10
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVE 279
            +E +F+ ++QATGVN+L EMV K+ +   N   L +EK++AE +L  AK +  S++     +K  G G TELNRDI D + + I + + E
Sbjct:  739 LEGSFSHVKQATGVNSLSEMVDKIKHHEENQKQLLKEKKDAEDRLHAAKRSLHSDEEALEKLKTGGFGKTELNRDIIDDIKSSILDEKSE 828          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized1.920e-4898.91protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB92... [more]
Uncharacterized9.380e-2458.51protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.800e-1956.18protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical4.430e-1747.31protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
Hypothetical5.420e-1749.45protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.090e-1445.05protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical5.250e-1343.96protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]
Ryanodine1.230e-1245.74receptor 1 n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
Fe2OG2.430e-1040.00dioxygenase domain-containing protein n=1 Tax=Thal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11270contigEcto-sp9_F_contig11270:792..1076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue5.7e-40
Seed eggNOG ortholog2880.D8LB92
EggNOG OGs2BW4R@1,2QS4Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.1990006-CDS-Ecto-sp9_F_contig11270:791..10671622928371.1990006-CDS-Ecto-sp9_F_contig11270:791..1067Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11270 792..1067 -
1692277849.5720809-CDS-Ecto-sp9_F_contig11270:791..10671692277849.5720809-CDS-Ecto-sp9_F_contig11270:791..1067Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11270 792..1067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.2119951-UTR-Ecto-sp9_F_contig11270:1067..10761622928371.2119951-UTR-Ecto-sp9_F_contig11270:1067..1076Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11270 1068..1076 -
1692277849.584586-UTR-Ecto-sp9_F_contig11270:1067..10761692277849.584586-UTR-Ecto-sp9_F_contig11270:1067..1076Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11270 1068..1076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11270.1093.1prot_Ecto-sp9_F_contig11270.1093.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11270 792..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11270.1093.1

>prot_Ecto-sp9_F_contig11270.1093.1 ID=prot_Ecto-sp9_F_contig11270.1093.1|Name=mRNA_Ecto-sp9_F_contig11270.1093.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKE
ARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV*
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mRNA from alignment at Ecto-sp9_F_contig11270:792..1076-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11270.1093.1 ID=mRNA_Ecto-sp9_F_contig11270.1093.1|Name=mRNA_Ecto-sp9_F_contig11270.1093.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11270:792..1076- (Ectocarpus species9 EcSCA_722f female)
GTGGCCGCGATGGAGTCGACCTTCGCGCGCATTCGCCAGGCGACGGGGGT AAACACCTTGGAGGAGATGGTCCTGAAGCTGGCCAACCAGAGCACGAACC ACGCTACCCTGGAGGAAGAGAAGCGGGAAGCCGAGAGCAAGCTCGCGAGG GCGAAGGAGGCGAGGCAGAGCGAAGACACCCGGTTCTCGTACATGAAGGC CAGCGGAGTGGGGAACACCGAGCTGAACCGGGACATCAGCGACAAGCTCA ACAACGACATAAAGGAGTACAGAGTGGAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11270:792..1076-

>mRNA_Ecto-sp9_F_contig11270.1093.1 ID=mRNA_Ecto-sp9_F_contig11270.1093.1|Name=mRNA_Ecto-sp9_F_contig11270.1093.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11270:792..1076- (Ectocarpus species9 EcSCA_722f female)
ATGGAGTCGACCTTCGCGCGCATTCGCCAGGCGACGGGGGTAAACACCTT
GGAGGAGATGGTCCTGAAGCTGGCCAACCAGAGCACGAACCACGCTACCC
TGGAGGAAGAGAAGCGGGAAGCCGAGAGCAAGCTCGCGAGGGCGAAGGAG
GCGAGGCAGAGCGAAGACACCCGGTTCTCGTACATGAAGGCCAGCGGAGT
GGGGAACACCGAGCTGAACCGGGACATCAGCGACAAGCTCAACAACGACA
TAAAGGAGTACAGAGTGGAGGTATGAATGGAGTCGACCTTCGCGCGCATT
CGCCAGGCGACGGGGGTAAACACCTTGGAGGAGATGGTCCTGAAGCTGGC
CAACCAGAGCACGAACCACGCTACCCTGGAGGAAGAGAAGCGGGAAGCCG
AGAGCAAGCTCGCGAGGGCGAAGGAGGCGAGGCAGAGCGAAGACACCCGG
TTCTCGTACATGAAGGCCAGCGGAGTGGGGAACACCGAGCTGAACCGGGA
CATCAGCGACAAGCTCAACAACGACATAAAGGAGTACAGAGTGGAGGTAT
GA
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