mRNA_Ecto-sp9_F_contig11270.1093.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB92_ECTSI) HSP 1 Score: 168 bits (425), Expect = 1.920e-48 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1
Query: 7 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVE
Sbjct: 44 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEA 135
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP6_9STRA) HSP 1 Score: 102 bits (255), Expect = 9.380e-24 Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 1 VAAMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
VAA+E+TFAR+RQATGV++LE+MV K+ANQ+ N TLE E+RE E + A + ++ + RF MKASGVG+TELNRDISDKL + + YR EV
Sbjct: 42 VAALEATFARVRQATGVHSLEDMVAKIANQAANRETLEREEREVERRAAAVRHRQEELEQRFCDMKASGVGSTELNRDISDKLKAEAESYRAEV 135
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX70_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.800e-19 Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRV 276
ME F +IRQATGVNTLE+MV K Q TN L EE+REAE +LA AK +++ + RF +K SG+G TELNRDI+D LN+ I E+R
Sbjct: 127 MEEAFVQIRQATGVNTLEQMVEKFKEQGTNRTGLLEERREAEDRLADAKRKKEAAEERFMELKQSGIGGTELNRDITDTLNSTILEHRA 215
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B1A3_9DINO) HSP 1 Score: 84.0 bits (206), Expect = 4.430e-17 Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 4 AAMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
A +E+ F I++ATGVNTLEEMV K Q N A+LEEEK +AE +LA+ K +++ + RF+ +KASG G TEL+R+ DK++ +I E + ++
Sbjct: 39 AELENAFLDIKKATGVNTLEEMVEKFLGQGANRASLEEEKADAEDRLAKVKAQKEAAERRFAELKASGAGETELSRETYDKMDKEIAEVKAQL 131
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CUQ0_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.420e-17 Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
+E F ++RQATGVN+LEEMV K Q N L +E+++ E +LA AK ++ + RFS +KASG+G+TELNR+ISD+LN+ I R+E+
Sbjct: 223 LEEQFTQVRQATGVNSLEEMVDKFVGQEGNRNALIDERKDVEGRLADAKRRKEEAEQRFSELKASGIGSTELNREISDELNHKILSGRMEL 313
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8D6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14 Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
++ F+ +R+ TGVN+L E+V K+ Q N L EKR+A+S+LA AK+ R+ + RFS ++ASG+G TE+NRD++D L DI R E+
Sbjct: 321 LDEDFSEVRKVTGVNSLAEVVEKIKKQKENKKQLVLEKRDADSRLAGAKQMREKLEKRFSELRASGIGTTEMNRDVADDLEKDIDTARAEL 411
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKC9_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.250e-13 Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 7 AMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVE 279
++E +FA I++ATGVN+L EMV K N + L EEKREAE +L+ K + + ++ +KA+G G+TELNR I + ++N I + RVE
Sbjct: 11 SLEESFAYIKRATGVNSLAEMVEKFTNHQEHRDRLLEEKREAEERLSSTKTSLEQAHEKYDQIKANGFGDTELNRQIIEDIDNSITKERVE 101
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Ryanodine (receptor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZS7_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.230e-12 Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1
Query: 1 VAAMESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVEV 282
V+ E F IR+ATGV +L+EMV K QS N L EEK E E + + KE T F+ KA+G+G +ELNR++ DKL+N+I E R E+
Sbjct: 1902 VSTYEEAFNAIREATGVRSLDEMVEKFLGQSANKQALVEEKFEVEQRQRKLKEELARVQTEFAEFKAAGIGGSELNREMYDKLDNEILEARHEL 1995
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0B0_THAPS) HSP 1 Score: 65.5 bits (158), Expect = 2.430e-10 Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 10 MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEARQSEDTRFSYMKASGVGNTELNRDISDKLNNDIKEYRVE 279
+E +F+ ++QATGVN+L EMV K+ + N L +EK++AE +L AK + S++ +K G G TELNRDI D + + I + + E
Sbjct: 739 LEGSFSHVKQATGVNSLSEMVDKIKHHEENQKQLLKEKKDAEDRLHAAKRSLHSDEEALEKLKTGGFGKTELNRDIIDDIKSSILDEKSE 828 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11270.1093.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11270.1093.1 >prot_Ecto-sp9_F_contig11270.1093.1 ID=prot_Ecto-sp9_F_contig11270.1093.1|Name=mRNA_Ecto-sp9_F_contig11270.1093.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp MESTFARIRQATGVNTLEEMVLKLANQSTNHATLEEEKREAESKLARAKEback to top mRNA from alignment at Ecto-sp9_F_contig11270:792..1076- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11270.1093.1 ID=mRNA_Ecto-sp9_F_contig11270.1093.1|Name=mRNA_Ecto-sp9_F_contig11270.1093.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11270:792..1076- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11270:792..1076- >mRNA_Ecto-sp9_F_contig11270.1093.1 ID=mRNA_Ecto-sp9_F_contig11270.1093.1|Name=mRNA_Ecto-sp9_F_contig11270.1093.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11270:792..1076- (Ectocarpus species9 EcSCA_722f female)back to top |