mRNA_Ecto-sp9_F_contig1127.1092.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1127.1092.1
Unique NamemRNA_Ecto-sp9_F_contig1127.1092.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1127.1092.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX2_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.420e-53
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:  223 RRVAATEAAVTIPENSGGSGGSFTVGEAVRANGQTLLGLSKQLEEKAGRDELSAKGEELEACIRERERAVRQWGVGRDFADSLGRANRGLAGKLLAVEGVLS 528
            RRVAATEAAV+IPENSGGSG SFTVGEAVRANGQ LLGLSKQLEEKAGRD+LSAKGEELEACIRERERAVRQWGVGRDFADSLGRANRGLAGKLLAVEGVLS
Sbjct:   63 RRVAATEAAVSIPENSGGSGVSFTVGEAVRANGQALLGLSKQLEEKAGRDDLSAKGEELEACIRERERAVRQWGVGRDFADSLGRANRGLAGKLLAVEGVLS 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1127.1092.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.420e-5396.08protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1127contigEcto-sp9_F_contig1127:22437..26041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size529
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928370.6292365-UTR-Ecto-sp9_F_contig1127:22436..225251622928370.6292365-UTR-Ecto-sp9_F_contig1127:22436..22525Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1127 22437..22525 +
1692277849.4884927-UTR-Ecto-sp9_F_contig1127:22436..225251692277849.4884927-UTR-Ecto-sp9_F_contig1127:22436..22525Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1127 22437..22525 +
1622928370.6410651-UTR-Ecto-sp9_F_contig1127:23627..237001622928370.6410651-UTR-Ecto-sp9_F_contig1127:23627..23700Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1127 23628..23700 +
1692277849.500419-UTR-Ecto-sp9_F_contig1127:23627..237001692277849.500419-UTR-Ecto-sp9_F_contig1127:23627..23700Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1127 23628..23700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928370.652209-CDS-Ecto-sp9_F_contig1127:23700..237371622928370.652209-CDS-Ecto-sp9_F_contig1127:23700..23737Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 23701..23737 +
1692277849.508231-CDS-Ecto-sp9_F_contig1127:23700..237371692277849.508231-CDS-Ecto-sp9_F_contig1127:23700..23737Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 23701..23737 +
1622928370.664008-CDS-Ecto-sp9_F_contig1127:24212..242351622928370.664008-CDS-Ecto-sp9_F_contig1127:24212..24235Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 24213..24235 +
1692277849.5154905-CDS-Ecto-sp9_F_contig1127:24212..242351692277849.5154905-CDS-Ecto-sp9_F_contig1127:24212..24235Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 24213..24235 +
1622928370.6772125-CDS-Ecto-sp9_F_contig1127:24252..243541622928370.6772125-CDS-Ecto-sp9_F_contig1127:24252..24354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 24253..24354 +
1692277849.5302243-CDS-Ecto-sp9_F_contig1127:24252..243541692277849.5302243-CDS-Ecto-sp9_F_contig1127:24252..24354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 24253..24354 +
1622928370.6865485-CDS-Ecto-sp9_F_contig1127:25040..251031622928370.6865485-CDS-Ecto-sp9_F_contig1127:25040..25103Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 25041..25103 +
1692277849.5420773-CDS-Ecto-sp9_F_contig1127:25040..251031692277849.5420773-CDS-Ecto-sp9_F_contig1127:25040..25103Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 25041..25103 +
1622928370.9576082-CDS-Ecto-sp9_F_contig1127:25900..260411622928370.9576082-CDS-Ecto-sp9_F_contig1127:25900..26041Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 25901..26041 +
1692277849.5558834-CDS-Ecto-sp9_F_contig1127:25900..260411692277849.5558834-CDS-Ecto-sp9_F_contig1127:25900..26041Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1127 25901..26041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1127.1092.1prot_Ecto-sp9_F_contig1127.1092.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1127 23701..26041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1127.1092.1

>prot_Ecto-sp9_F_contig1127.1092.1 ID=prot_Ecto-sp9_F_contig1127.1092.1|Name=mRNA_Ecto-sp9_F_contig1127.1092.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=122bp
MSPGRPAAKTFAECAQRSTARRVAATEAAVTIPENSGGSGGSFTVGEAVR
ANGQTLLGLSKQLEEKAGRDELSAKGEELEACIRERERAVRQWGVGRDFA
DSLGRANRGLAGKLLAVEGVLS
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mRNA from alignment at Ecto-sp9_F_contig1127:22437..26041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1127.1092.1 ID=mRNA_Ecto-sp9_F_contig1127.1092.1|Name=mRNA_Ecto-sp9_F_contig1127.1092.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3605bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1127:22437..26041+ (Ectocarpus species9 EcSCA_722f female)
AGGGAGTGAAGCAGGGAAGATCGCTCCTTGAGGTAGCAGGGCTACTGGCA
TCGATGGCATCCCTCAAGGAAATCCTCAACCTCGACAAGGCAAGAGAAAG
AGAACGGCGGTTGGACAATTGTTGCTGTTGCCGCGAGACGCGGTAATCAC
TTGCCTAATGTATGCGTAGCAGAGTTGTTGTCCCTACCGCCGTTGCGTCC
TCCAGCAGTACGTACAGCACCCCTGCGAGCTCTCTCGACGCAGACGATCT
GTGGTGTGTCCTTGTGTTTTCGTCGCATGTATTCCGGCACCAGTCTATGT
ACACCTTTCGGAATATATTTGACGTTGTATGGTCTGATTTTATCAGCCGT
GTCCAATGTACGGCAGCTTCTGTGTATCTGGGATCAGAAAATGGATCGCG
AGTTAAGCAAAAATAAATACACGCACAGAAAGACTACCCATTCGAGATCG
AGTTGCCACACTGTCTCGACCAAGGTACTCCAGTCCTCGGGGTACGTTGC
TTCCAATGGATTATGACGACCTCCACTCGAGGGCATGTTTACACGCGAAG
GGAATTGCCAAGTCGCGCGCACGCTCCGTCGCTCTCCAACTGAACACCAG
CTGCTGGCTGCATGGCACACGGGCAAGCGGCAAGCGGCAGGAATCATCAC
GACGGCAGACAGAAGCTCGCTCGCAGAAGCTCGCTCTACTGCTGTTATTT
CATGTCGACACATTTTCTTGCCATGCAGCAGTACACTTCTGCACCTCCCC
TGTACGTACGGCTATACAACCGCCATTCGTTGTAGATGCCGCAATACATA
TGCCACCGTCAGACCGCCGGCCCCAACTAACGCGGCATCCGATAACGCAT
GATGCTTCGTGTAAGACAATCGGATACCAATATTCAAATGTTGGACTCCG
ACAGTAGTAGTCTAGGCCAGTGATGTACACAGAGCAGTCTCAGGGTTTTC
GTCTTTCACCTCTCTTCGCAAGTCTCAAGCTTGTACGCAGTTGGTGAGCC
ACATTCGTGCCGTACTGGAGCGGTGGTTTACATGTACGCCACATCAACTC
ATGGCTTTCCCCTCCTCGTAGTTCAGTCTCGGTTGGTCGATCCTTAAGTC
GTCTGTGTTAGGGCAAGCAATAAATGAGTGCCCACCCATTCCCACCCGTT
TCGATCTCTTGCCGAACGGAACGATATTACGCTGTAAACAGGCAGAGCTG
GTGTTCCAACGACTGGTGGAGGCGGTTGAATCCCACTCGTTAGACCTGGC
GGCGGTGAGGCGAGATGTCTCCAGGAAGGCCAGCGGCGAAGACCTTCGCG
GGTGAGGAGACAGACGCGGGTATTACAGCAGCTTGGTATGTTCAGCAGGC
GCCCGCACTTGGGAGTCAAGAAATTGAGCCCCGGAGAACTCGCAATCCAT
GGACTTGAGCACCATTTGTGAGCACGGTTAAGAACCTCTACACAAAAACT
AGAAGTAATAGCGGCCATTTCTCGAATGACCATAAAATAAACTAAGAACC
CCAACCTCGGCCAAAAGTATATCTAGAAGTTCTGAAGTGCGGGCGCTAAC
TGATTGGTTATGCGGTGGCATGCAAGCTCGTTTAGTTAGTTTGGCGGTGC
TCCATGATGTTGTGGTTCTTCCCAAGCTCCTTTCCCGTTGTCGTCTCCTG
TTTCGCGCCACAGCATTCGAGAGTTCAAGTCGAACAACCCCCGCTCTCCC
ACCGCAACCCACGCGCCACGGCCCTCTCTCCCTCTCTCCCTCCCTCCCTC
TCCCCCTCGCCAAAATACGACCGTAGAATGTGCACAGAGATCAACGGCCG
CCTGGCTGCCCTGGAGCGCCGCGTGGCGGCCACAGAAGCGGCGGTAACGA
TCCCGGAAAATTCCGGCGGCTCTGGCGGCAGTTTCACGGTGGGGGAGGCT
GTTCGGGCAAACGGGCAGGTGGGCGATGGGGGGGGGGGGGGGCCGGGTAC
CGCGAGGGGGGAGTGGAGGGCAGTGGGCCCCCCCCCAGGTGGGGGGAGGT
CACCGGCTTGACGACGCGTGTTTGTTTCGGAGTTAACATGCAATGAGACA
AGAAGCAGTACTGCAACCTTGGTTGTGACCACGACAGTCTCCTCGAATTG
GAAAGGTTGCCTGCGGCAGATGGAGCTCGAGACACGCGCACGATCCCGGT
AATGAAGCCACCCAGAAACCGCGACGTGGGCTGCACGACGCTTATTGCTT
TTGCAGAATGATGATGATAGGGTTTAGTTTTTTGTGGTTGATTTCTTCGT
CCTTGTCGTCATCTAGAAAACGCCTCCTCGTCCTTCATGCCTGACCCATC
CGGTAGATCATGGAGCCAGGCGTTCTTGTTCGGCACGTGTGCTATGTCGC
TGTGCGGTACATAGCAACTGGGGAGGTTAATCTGGCTCCGGTGGCCGTAC
ACTGTGCTCGTACACTGTGCTCGTACACTGCCGATGGCTTGTTTGTCCTT
AGAGTACATATCATGGTGTTGTTGTCGCGGTTTAAATTCGGCCTGATGTT
CGCCTGTCATGTGCTAATTTCGCGTATATTGTGTGCCGGCGTGCTCCCTG
AGCACATTCCCGCCGCCCCATGTGCTTCGGTATCCCCCGTCGATCACCGT
TCAGACGTTGCTCGGTCTGTCCAAGCAGCTGGAAGAAAAGGCCGGGAGGG
ATGAGCTATCGGCGAAGGTATGGCTGTCGTCATGGTCGTCTTTGCTGCTG
CCTGGGCGAGAATTTGTTGTCTCAACAACAGACGCAAAAGACCCGTGGTA
GTCTCTACCCCGTGCCTCGGTACTCCGCAGAAATCCAACCGGTAGGGTTG
AACTCCGCGCTCGCAGCACAGGCAGACGCGACAAGAGTACATATGGCGCA
ACAGTCCATGAACTAAAAAAAGACGGAAAGCAACTCCCTGTTCAACGCGG
CAAACACGCGGTGATGAATGACCCAGCAGGCGGTGCCCTACGATTGAAAA
CGTAACTCACGCCGGCGGAAACCCAGATTGCCGCTCCGCTCCGTCCCGGT
AGCATAGGGGTGCGAGGCAAATGGCCTCGGGCCTACTGCAAGAGTTTGCA
TCGGTTCGCCTCCCGCCTCCCGCCTCCTGCCTCCCCCCCCGCCCCCCGTC
TCGTACCGCCTCGCCCGGGAGTTGGGTGTTCCGGGCGTAGAAGGAGCCCG
AAACAATCAGACCTTTTTCATGGCCTTGAAAGTAAACGCCGCGTTTCCGA
GTGCGGCAGGGCGAGAAGAGCTCGAGGCATGTACTGGAAAGCCATCGGAA
TGTCTGTGTCGCATGGCATGTGCAGGGAAGGGGCAGGGGGGGGGGGGGAC
TTTGAAGCCTGCGCCCCCGTCCTAAAGAGCGTGCAATCACACCTACAAAA
TATCTCCCTCCCTGTAATCTCTACGCTAGCCTGATGACTAGCTGTTCTAC
ATGTATCGCGTCACGAGGCTGAACCACAGACTACGAGCTACGACGTACGT
TCGTGTACATGCAGGGCGAGGAGCTCGAGGCCTGCATCCGTGAGCGCGAG
CGAGCGGTGCGGCAGTGGGGAGTCGGGCGAGACTTCGCGGACAGCCTCGG
GAGGGCCAACCGCGGGCTAGCCGGGAAACTGCTTGCCGTCGAAGGGGTAT
TGAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1127:22437..26041+

>mRNA_Ecto-sp9_F_contig1127.1092.1 ID=mRNA_Ecto-sp9_F_contig1127.1092.1|Name=mRNA_Ecto-sp9_F_contig1127.1092.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1127:22437..26041+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTCCAGGAAGGCCAGCGGCGAAGACCTTCGCGGATGTCTCCAGGAA
GGCCAGCGGCGAAGACCTTCGCGGAATGTGCACAGAGATCAACGGCCAAT
GTGCACAGAGATCAACGGCCCGCCGCGTGGCGGCCACAGAAGCGGCGGTA
ACGATCCCGGAAAATTCCGGCGGCTCTGGCGGCAGTTTCACGGTGGGGGA
GGCTGTTCGGGCAAACGGGCAGCGCCGCGTGGCGGCCACAGAAGCGGCGG
TAACGATCCCGGAAAATTCCGGCGGCTCTGGCGGCAGTTTCACGGTGGGG
GAGGCTGTTCGGGCAAACGGGCAGACGTTGCTCGGTCTGTCCAAGCAGCT
GGAAGAAAAGGCCGGGAGGGATGAGCTATCGGCGAAGACGTTGCTCGGTC
TGTCCAAGCAGCTGGAAGAAAAGGCCGGGAGGGATGAGCTATCGGCGAAG
GGCGAGGAGCTCGAGGCCTGCATCCGTGAGCGCGAGCGAGCGGTGCGGCA
GTGGGGAGTCGGGCGAGACTTCGCGGACAGCCTCGGGAGGGCCAACCGCG
GGCTAGCCGGGAAACTGCTTGCCGTCGAAGGGGTATTGAGCGGCGAGGAG
CTCGAGGCCTGCATCCGTGAGCGCGAGCGAGCGGTGCGGCAGTGGGGAGT
CGGGCGAGACTTCGCGGACAGCCTCGGGAGGGCCAACCGCGGGCTAGCCG
GGAAACTGCTTGCCGTCGAAGGGGTATTGAGC
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