mRNA_Ecto-sp9_F_contig11264.1085.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11264.1085.1
Unique NamemRNA_Ecto-sp9_F_contig11264.1085.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11264.1085.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB8_ECTSI)

HSP 1 Score: 717 bits (1852), Expect = 2.460e-257
Identity = 359/391 (91.82%), Postives = 366/391 (93.61%), Query Frame = 1 
Query:    1 MAPKNSPPPKGREAVKNLKASASPIAVAQAQVAHTFGKLTDVIQELQDAVEREREAVDTDKLNKPGHGAHNFGQPILPLGDLIDRIDDTMANALYAFIDKFNQFPNAAGIPQLLLPRLFLECSNDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLLKPSEKRERTVQHILGNIRGHLRTQRTFADNELNWVINQTGLDVLVHKYREIMVHVRLQPTPATFSTDCGMLLEVVKKKTWSLTAQQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGARRTISYTLCLDRHQAELVAAPGPNTTREPPNQVDVHIMPVRDQLDVWKSTPESLKTVEQLRKMVAVIGKMLAALEHQPGYDARNAFSDLGQDMNQARYSR 1173
            MAPKNSPP KG+EAVK+LKASASPIAVAQAQVAHTFGKLTDVIQELQDAVE+ER AVDTDKLNKPGHGAHNFGQPILPLGDL DRIDDTM N LYAFIDKFNQFP  AGIPQLLLPRLFLEC NDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLL PSEKR+RTVQHILGNI GHLRTQRTFADN LNWVIN+TGLD LVHKYREIMVHVRLQPTPATFSTDCGM LEVVKKK WSLT QQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDG R  ISYTL LDRHQAELVA PG N TR+PPNQVDVHIMPVRDQLDVW STPESLKTVEQLRK VAVIGKMLAALEH PGYDARNAFSDLGQDM+QARYSR
Sbjct:    1 MAPKNSPPSKGKEAVKDLKASASPIAVAQAQVAHTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGDLKDRIDDTMTNTLYAFIDKFNQFPKTAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLLTPSEKRDRTVQHILGNIGGHLRTQRTFADNGLNWVINETGLDALVHKYREIMVHVRLQPTPATFSTDCGMFLEVVKKKPWSLTVQQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGVRCNISYTLSLDRHQAELVATPGQNPTRQPPNQVDVHIMPVRDQLDVWNSTPESLKTVEQLRKTVAVIGKMLAALEHLPGYDARNAFSDLGQDMDQARYSR 391
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BLAST of mRNA_Ecto-sp9_F_contig11264.1085.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ4_9PHAE)

HSP 1 Score: 503 bits (1296), Expect = 2.130e-174
Identity = 255/292 (87.33%), Postives = 264/292 (90.41%), Query Frame = 1 
Query:    1 MAPKNSPPPKGREAVKNLKASASPIAVAQAQVAHTFGKLTDVIQELQDAVEREREAVDTDKLNKPGHGAHNFGQPILPLGDLIDRIDDTMANALYAFIDKFNQFPNAAGIPQLLLPRLFLECSNDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLLKPSEKRERTVQHILGNIRGHLRTQRTFADNELNWVINQTGLDVLVHKYREIMVHVRLQPTPATFSTDCGMLLEVVKKKTWSLTAQQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGAR 876
            MAPKNSPP KG+EAVK+LKASASPIAVAQAQVA TFGKLTDVIQELQDAVE+ER AVDTDKLNKPGHGAHNFGQPILPLGDL  RIDDTM NALYAFIDKFNQFP AAGIPQLLLPRLFLEC NDVQEHYRQFIEPILFPNGSKT+PALLRDHLSNNYQELFLL PSEKR RTVQ ILGNI GHLRTQR FADN+LNWVIN+TGLD LV KYREIMVHVRLQPTP TFS DCGM LEVVKK  +   ++ PTAAGVQPFDPK HSSSVDAMGT EGDLCVVVFP MEV GAR
Sbjct:    1 MAPKNSPPSKGKEAVKDLKASASPIAVAQAQVAQTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGDLKGRIDDTMTNALYAFIDKFNQFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTNPALLRDHLSNNYQELFLLTPSEKRNRTVQQILGNIGGHLRTQRPFADNDLNWVINETGLDALVLKYREIMVHVRLQPTPTTFSADCGMFLEVVKKNKF-FNSKAPTAAGVQPFDPKHHSSSVDAMGTIEGDLCVVVFPGMEVGGAR 291
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BLAST of mRNA_Ecto-sp9_F_contig11264.1085.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.840e-29
Identity = 88/271 (32.47%), Postives = 136/271 (50.18%), Query Frame = 1 
Query:  112 KLTDVIQELQDAVEREREAVDTDKLNKPGHGAHNFGQPILPLGDLIDRIDDTMANALYAFIDKFNQFPNAAG--------IPQLLLPRLFLECSNDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLLKPSEKRERTVQHILGNIRGHLRTQRTFADNELNWVINQTGLDVLVHKYREIMVHVRLQPTPATFST-DCGMLLEVVKKKTWSLTAQQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGARRTISYTL 897
            K   ++QE ++ V+RE       +LN PGH A +  QPI  L  L +   + M ++L  +I + N++ +  G         PQ +LPRLF ECS++V+  YR  +E +L       D   + +++ N++++LF L P E     +Q IL  +R +L    +F  +++ W++  +GLD +  +Y  +M +VRLQ  P TFST DCG                      VQ FDP+ HS  V   G   G  C +VFPA+     R T+ YTL
Sbjct:  292 KAVRLLQEYKEEVDRELSGAMVARLNNPGHDAVDLDQPIFNLEKLKEVTANVMDDSLNEWIARVNEWGDKTGGSRAGGGITPQAVLPRLFWECSDEVETRYR-VVEDVL----RVVDKMKMHENMCNHHKDLFHLMPREDCNVAIQRILRGVRSYL-ADHSFDPDDIQWLVTGSGLDSVALQYMVVMANVRLQYPPVTFSTTDCGK---------------------VQQFDPELHSD-VGGGGVRPGQECTIVFPAIMTGEKRCTVGYTL 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11264.1085.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.460e-25791.82protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.130e-17487.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.840e-2932.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11264contigEcto-sp9_F_contig11264:1256..3607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1609
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11264.1085.1prot_Ecto-sp9_F_contig11264.1085.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11264 1256..3174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.7939444-CDS-Ecto-sp9_F_contig11264:1255..21921622928368.7939444-CDS-Ecto-sp9_F_contig11264:1255..2192Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11264 1256..2192 +
1692277849.1453457-CDS-Ecto-sp9_F_contig11264:1255..21921692277849.1453457-CDS-Ecto-sp9_F_contig11264:1255..2192Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11264 1256..2192 +
1622928368.8073893-CDS-Ecto-sp9_F_contig11264:2935..31741622928368.8073893-CDS-Ecto-sp9_F_contig11264:2935..3174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11264 2936..3174 +
1692277849.159131-CDS-Ecto-sp9_F_contig11264:2935..31741692277849.159131-CDS-Ecto-sp9_F_contig11264:2935..3174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11264 2936..3174 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.816865-UTR-Ecto-sp9_F_contig11264:3174..36071622928368.816865-UTR-Ecto-sp9_F_contig11264:3174..3607Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11264 3175..3607 +
1692277849.1688402-UTR-Ecto-sp9_F_contig11264:3174..36071692277849.1688402-UTR-Ecto-sp9_F_contig11264:3174..3607Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11264 3175..3607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11264.1085.1

>prot_Ecto-sp9_F_contig11264.1085.1 ID=prot_Ecto-sp9_F_contig11264.1085.1|Name=mRNA_Ecto-sp9_F_contig11264.1085.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=392bp
MAPKNSPPPKGREAVKNLKASASPIAVAQAQVAHTFGKLTDVIQELQDAV
EREREAVDTDKLNKPGHGAHNFGQPILPLGDLIDRIDDTMANALYAFIDK
FNQFPNAAGIPQLLLPRLFLECSNDVQEHYRQFIEPILFPNGSKTDPALL
RDHLSNNYQELFLLKPSEKRERTVQHILGNIRGHLRTQRTFADNELNWVI
NQTGLDVLVHKYREIMVHVRLQPTPATFSTDCGMLLEVVKKKTWSLTAQQ
PTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGARRTISYTLC
LDRHQAELVAAPGPNTTREPPNQVDVHIMPVRDQLDVWKSTPESLKTVEQ
LRKMVAVIGKMLAALEHQPGYDARNAFSDLGQDMNQARYSR*
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mRNA from alignment at Ecto-sp9_F_contig11264:1256..3607+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11264.1085.1 ID=mRNA_Ecto-sp9_F_contig11264.1085.1|Name=mRNA_Ecto-sp9_F_contig11264.1085.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2352bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11264:1256..3607+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGCCCAAGAACTCACCACCCCCAAAGGGAAGAGAAGCAGTCAAGAA
CCTGAAAGCCTCGGCAAGTCCCATCGCTGTGGCTCAGGCACAGGTAGCGC
ACACGTTCGGCAAGCTAACGGATGTGATACAAGAGTTACAAGACGCGGTC
GAGAGGGAGCGCGAGGCGGTGGACACGGATAAGCTCAACAAACCAGGCCA
TGGCGCCCACAACTTTGGGCAGCCCATCCTCCCTTTGGGCGACCTGATAG
ACAGAATCGACGACACGATGGCCAACGCGCTGTATGCCTTCATCGACAAG
TTCAACCAGTTTCCGAACGCCGCCGGCATCCCCCAGCTGCTGCTGCCGCG
GTTGTTTCTGGAATGCTCCAACGACGTCCAGGAACATTACCGCCAGTTCA
TCGAGCCCATCTTGTTTCCCAACGGTTCGAAGACAGATCCCGCCCTACTG
CGCGACCACCTGTCGAACAACTACCAGGAACTCTTTCTCCTGAAGCCAAG
CGAGAAACGCGAGCGCACCGTCCAGCATATTCTCGGCAATATTCGTGGGC
ACCTTCGTACTCAACGCACTTTCGCAGACAATGAGCTTAATTGGGTCATC
AATCAGACCGGTCTCGATGTGTTGGTGCACAAATACCGGGAGATCATGGT
CCACGTGCGCCTTCAACCAACTCCGGCAACCTTCAGCACTGACTGCGGGA
TGCTCCTGGAAGTAGTGAAGAAAAAAACGTGGAGTTTGACCGCACAACAA
CCCACCGCCGCCGGGGTGCAGCCTTTCGACCCCAAACGTCATTCGTCATC
TGTAGACGCCATGGGCACTTCGGAAGGAGACTTGTGCGTTGTGGTGTTTC
CCGCCATGGAAGTGGACGGGGCGAGGCGCACCATCAGCTACACGTTGTGC
TTGGACCGGCATCAGGCAGAGCTCGTCGCCGCACCAGGTATTTGTATTTT
TTTTTTCGTTTGATTTCCCCGCCGCATCGTTTCTGGTCAGTTCAGTTATG
TACACAAAGAACGGAACCCCTAACCCTAACCCTACACAAACAGAAAAACT
ATGTAGCGAATGAACTACACAACCGTGCCACAATAGCACACCGGAAACAA
AATCATCCCAACACCGTCCTTCTACACCTTCCCAGCATACACACGGAAAA
TATACATGTATGTATGACGGCTACCAAACGAACGGTCTTCTTGTTGAACC
TGTTACCCACAGGGGAGATATTGCTGTATGCTCCTGGGGAAACCGTATGC
ATAGAAATATTGTATAGGTACATAGCTGCGCCGACGTTATGAACTACTTG
CTAATCTATCTTAGACTAATTTTTTTTCTGTTGATAGAGATGGATCAGTT
GTGTCGTCTAAGAAAAATAGAAACAGTGGCGAATGTGTATAGCATTCTGT
AAAACATCCCGCCAGGCATAACACGATCTACTCCAGCTCCCCCATGCTGC
CGATGTTGTTTTCAGGACATACCCCGGTACAATATTGCGAACATTTTTGT
GAGCGCAGCCCCAATCCTAAACTCGTTTCGTCTCCTGAGAGGGTCACCTG
CACAGCCCAGCCAGTAAGGGTTCACTCGTTTTCAAGGTTCGATCGTGCAG
TGCAAAAAATGATCGAGTTTGAGTTCGCACCATTTCACTCACTGTTTGTG
CCCAACCCTCGTCCTCGGCGACTATTGTAGGTCCCAACACGACCCGGGAA
CCTCCCAATCAGGTCGACGTGCACATCATGCCCGTGCGGGACCAACTCGA
TGTGTGGAAGTCCACCCCGGAATCCCTGAAAACGGTCGAGCAGCTGCGCA
AGATGGTGGCCGTCATTGGCAAGATGCTCGCAGCTCTTGAACACCAGCCC
GGTTACGACGCCAGGAATGCCTTCAGTGACCTGGGACAAGACATGAATCA
AGCGCGGTATTCCAGGTAGACCACATGGAAGCTGAAGATGGCGTTAATGT
TCTACTCATGATAAGATACCTCGTCGGACCGTGCTCAGAATCCGTCCGGA
CAGCATGGTCACAAACTGACAAAGTAGCCAAGAAAATAATCGTGATTTCC
ACATTGTCCGACTCTACACGGAACGGGAACAAACCAGAAAAGATCGGATG
CCGCAACTCCTAAACATGAGAGAACAGCGAAGAAGCGGTATTGGTGGGAA
ATCGACAGAACCAACCAGTGATCTTGTCCGTGGCGTGGACGGGTAGCTAT
TCTCTTTACCCTTCCCTCCATGCTCCAACAATCGATGCGCGCCCTTCCTT
GCGACATTCGGATACTATGTCAAACTTTCAAGGGTCACATTTCGGTTGGC
CTTTCCAGGTTGTTTGTTTGTTCCATGTATTTTTCCATTGTAGGGCATGA
CG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11264:1256..3607+

>mRNA_Ecto-sp9_F_contig11264.1085.1 ID=mRNA_Ecto-sp9_F_contig11264.1085.1|Name=mRNA_Ecto-sp9_F_contig11264.1085.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2352bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11264:1256..3607+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGCCCAAGAACTCACCACCCCCAAAGGGAAGAGAAGCAGTCAAGAA
CCTGAAAGCCTCGGCAAGTCCCATCGCTGTGGCTCAGGCACAGGTAGCGC
ACACGTTCGGCAAGCTAACGGATGTGATACAAGAGTTACAAGACGCGGTC
GAGAGGGAGCGCGAGGCGGTGGACACGGATAAGCTCAACAAACCAGGCCA
TGGCGCCCACAACTTTGGGCAGCCCATCCTCCCTTTGGGCGACCTGATAG
ACAGAATCGACGACACGATGGCCAACGCGCTGTATGCCTTCATCGACAAG
TTCAACCAGTTTCCGAACGCCGCCGGCATCCCCCAGCTGCTGCTGCCGCG
GTTGTTTCTGGAATGCTCCAACGACGTCCAGGAACATTACCGCCAGTTCA
TCGAGCCCATCTTGTTTCCCAACGGTTCGAAGACAGATCCCGCCCTACTG
CGCGACCACCTGTCGAACAACTACCAGGAACTCTTTCTCCTGAAGCCAAG
CGAGAAACGCGAGCGCACCGTCCAGCATATTCTCGGCAATATTCGTGGGC
ACCTTCGTACTCAACGCACTTTCGCAGACAATGAGCTTAATTGGGTCATC
AATCAGACCGGTCTCGATGTGTTGGTGCACAAATACCGGGAGATCATGGT
CCACGTGCGCCTTCAACCAACTCCGGCAACCTTCAGCACTGACTGCGGGA
TGCTCCTGGAAGTAGTGAAGAAAAAAACGTGGAGTTTGACCGCACAACAA
CCCACCGCCGCCGGGGTGCAGCCTTTCGACCCCAAACGTCATTCGTCATC
TGTAGACGCCATGGGCACTTCGGAAGGAGACTTGTGCGTTGTGGTGTTTC
CCGCCATGGAAGTGGACGGGGCGAGGCGCACCATCAGCTACACGTTGTGC
TTGGACCGGCATCAGGCAGAGCTCGTCGCCGCACCAGATGGCGCCCAAGA
ACTCACCACCCCCAAAGGGAAGAGAAGCAGTCAAGAACCTGAAAGCCTCG
GCAAGTCCCATCGCTGTGGCTCAGGCACAGGTAGCGCACACGTTCGGCAA
GCTAACGGATGTGATACAAGAGTTACAAGACGCGGTCGAGAGGGAGCGCG
AGGCGGTGGACACGGATAAGCTCAACAAACCAGGCCATGGCGCCCACAAC
TTTGGGCAGCCCATCCTCCCTTTGGGCGACCTGATAGACAGAATCGACGA
CACGATGGCCAACGCGCTGTATGCCTTCATCGACAAGTTCAACCAGTTTC
CGAACGCCGCCGGCATCCCCCAGCTGCTGCTGCCGCGGTTGTTTCTGGAA
TGCTCCAACGACGTCCAGGAACATTACCGCCAGTTCATCGAGCCCATCTT
GTTTCCCAACGGTTCGAAGACAGATCCCGCCCTACTGCGCGACCACCTGT
CGAACAACTACCAGGAACTCTTTCTCCTGAAGCCAAGCGAGAAACGCGAG
CGCACCGTCCAGCATATTCTCGGCAATATTCGTGGGCACCTTCGTACTCA
ACGCACTTTCGCAGACAATGAGCTTAATTGGGTCATCAATCAGACCGGTC
TCGATGTGTTGGTGCACAAATACCGGGAGATCATGGTCCACGTGCGCCTT
CAACCAACTCCGGCAACCTTCAGCACTGACTGCGGGATGCTCCTGGAAGT
AGTGAAGAAAAAAACGTGGAGTTTGACCGCACAACAACCCACCGCCGCCG
GGGTGCAGCCTTTCGACCCCAAACGTCATTCGTCATCTGTAGACGCCATG
GGCACTTCGGAAGGAGACTTGTGCGTTGTGGTGTTTCCCGCCATGGAAGT
GGACGGGGCGAGGCGCACCATCAGCTACACGTTGTGCTTGGACCGGCATC
AGGCAGAGCTCGTCGCCGCACCAGGTCCCAACACGACCCGGGAACCTCCC
AATCAGGTCGACGTGCACATCATGCCCGTGCGGGACCAACTCGATGTGTG
GAAGTCCACCCCGGAATCCCTGAAAACGGTCGAGCAGCTGCGCAAGATGG
TGGCCGTCATTGGCAAGATGCTCGCAGCTCTTGAACACCAGCCCGGTTAC
GACGCCAGGAATGCCTTCAGTGACCTGGGACAAGACATGAATCAAGCGCG
GTATTCCAGGTAGGTCCCAACACGACCCGGGAACCTCCCAATCAGGTCGA
CGTGCACATCATGCCCGTGCGGGACCAACTCGATGTGTGGAAGTCCACCC
CGGAATCCCTGAAAACGGTCGAGCAGCTGCGCAAGATGGTGGCCGTCATT
GGCAAGATGCTCGCAGCTCTTGAACACCAGCCCGGTTACGACGCCAGGAA
TGCCTTCAGTGACCTGGGACAAGACATGAATCAAGCGCGGTATTCCAGGT
AG
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