mRNA_Ecto-sp9_F_contig1126.1082.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1126.1082.1
Unique NamemRNA_Ecto-sp9_F_contig1126.1082.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK7_ECTSI)

HSP 1 Score: 689 bits (1779), Expect = 2.670e-235
Identity = 407/476 (85.50%), Postives = 416/476 (87.39%), Query Frame = 1
Query:    1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----NAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKVLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSE 1413
            MLVKAGMMAVIS RA GADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGV NNHP    VPR GDGVGDCRESGYR PLMSPLREA+EVSLGG+RVKMMVST  P TRPEDVGHG  TDWGCPPKPQQRQTSPP TGTK+TEAAREAAAREGCGRAVGCLT     XXXXXXXXXXXXXXXXXX            X     NAGHG+RKP TI VLQHTADAMQKQEVPVRADRLLSLP  TVA   XXX     GGDAGVDC PPLQAGEQSATSIRRRV+ALQ RKLREEKVLCVFMRYRLEISA+NLRGLD VILASEARRAVVNAEVKAATE FRRD+AEANRFRLEAEACKAALAEVAVIP VP NSIARGVYGDWFHGREF RFV KTRERYGDGSD+LFVATDVVSQQHR RNGGEGGSVWAVGVKELGQGTFG+VTRLDVLTLGKSYAAKEFKD  E
Sbjct:    1 MLVKAGMMAVISPRAMGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVTNNHPXXXXVPRRGDGVGDCRESGYRGPLMSPLREAVEVSLGGRRVKMMVSTQTPSTRPEDVGHGRGTDWGCPPKPQQRQTSPPQTGTKSTEAAREAAAREGCGRAVGCLTXXXXXXXXXXXXXXXXXXXXXXXGAFCAGGGFSDNXXTGCGNAGHGDRKPPTIPVLQHTADAMQKQEVPVRADRLLSLPRATVAAAAXXXAAS--GGDAGVDCVPPLQAGEQSATSIRRRVDALQSRKLREEKVLCVFMRYRLEISADNLRGLDCVILASEARRAVVNAEVKAATEVFRRDMAEANRFRLEAEACKAALAEVAVIPSVPANSIARGVYGDWFHGREFKRFVAKTRERYGDGSDELFVATDVVSQQHRARNGGEGGSVWAVGVKELGQGTFGIVTRLDVLTLGKSYAAKEFKDQGE 474          
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN5_9PHAE)

HSP 1 Score: 683 bits (1762), Expect = 1.390e-232
Identity = 407/471 (86.41%), Postives = 423/471 (89.81%), Query Frame = 1
Query:    1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKVLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDV 1407
            MLVKAG+MAV S RATGADD +GSXXXXXXXXXXX PPPE+NGRGEMRRP GLVAPGE V NNHPPGLVVPRGGDGV DCRE GYR  LMSPLREA+ +S GG+RVKMM STHPP TRP+DVGHGGRTDWGCPPKPQ+RQTSPP TGTK+TEAA+EAAAR+GCGRAV  LT AAGA  XXXXXXXX   XXXXXXXXXXXXXXXX    NAGHG+RKP TI V QHTADAMQKQEV VRADRLLSLP TT A  XXXXX    GGDAGVDCAPP+Q GEQSATSIRRRVEALQ R LREEK LC FMRYRL ISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRD+AEANRFRLEAEACKAALAEVAVIPPVP NSIARGVYGDWFHGRE+NRFVDKTRERYGDGSD+LFVATDVVSQQHRTRNGGEGGSVWAVGVK LGQGTFGVVTRLDVLTLGKSYAAKEFKDV
Sbjct:    1 MLVKAGIMAVTSPRATGADDETGSXXXXXXXXXXXKPPPERNGRGEMRRPSGLVAPGERVTNNHPPGLVVPRGGDGVDDCREGGYRGLLMSPLREAVAMSFGGRRVKMMASTHPPSTRPKDVGHGGRTDWGCPPKPQRRQTSPPQTGTKSTEAAKEAAARKGCGRAVSFLTAAAGAAGXXXXXXXXSDCXXXXXXXXXXXXXXXXTGGGNAGHGDRKPPTIPVHQHTADAMQKQEVSVRADRLLSLPRTTEAAAXXXXXAS--GGDAGVDCAPPMQVGEQSATSIRRRVEALQLRNLREEKFLCAFMRYRLNISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDIAEANRFRLEAEACKAALAEVAVIPPVPANSIARGVYGDWFHGREYNRFVDKTRERYGDGSDELFVATDVVSQQHRTRNGGEGGSVWAVGVKGLGQGTFGVVTRLDVLTLGKSYAAKEFKDV 469          
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL9_ECTSI)

HSP 1 Score: 649 bits (1674), Expect = 1.130e-219
Identity = 379/488 (77.66%), Postives = 391/488 (80.12%), Query Frame = 1
Query:    1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLV-APGEGVINNHPPGLVVP---------------RGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEK-VLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSE 1413
            MLVKAGMMAVIS RAT ADD +GSXXXXXXXXXXXNPPPEK+GRGEMRRPPGLV APGEGV                          RGGDGVGDCRESGYR  LMSPLREA+EVSLGG+RVKMMVSTHP  TRPEDVGHGGRTDWG PPKPQ+RQ+SPP TGTKNTEAAREAAAREGCGRAVGCLTVAAGA                               NAGHG+RKP TI VLQHTADAMQKQEVPV+ADRLLSLP  TVA           GGDAGVDCA   QAGEQSATSIRRRVEA Q RKLREE+ VLCV MRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATE FRRD+AEANRFRLEAEACKAALAEVAVIP VP NSIARGVYGDWFHGREF RFV KTRERYGDGSD+LFVATDVVSQQHR RNGGEGGSVWAVGVKELGQGTFG+VTRLDVLTLGKSYAAKEFKD  E
Sbjct:    1 MLVKAGMMAVISPRATVADDENGSXXXXXXXXXXXNPPPEKHGRGEMRRPPGLVVAPGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXRGGDGVGDCRESGYRRSLMSPLREAVEVSLGGRRVKMMVSTHPLSTRPEDVGHGGRTDWGSPPKPQRRQSSPPQTGTKNTEAAREAAAREGCGRAVGCLTVAAGATPAGAAGAGGGDSFCAGGGFSDNRGTGCG--NAGHGDRKPPTIPVLQHTADAMQKQEVPVQADRLLSLPRATVAAAATAAS----GGDAGVDCA---QAGEQSATSIRRRVEAPQIRKLREERRVLCVLMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEVFRRDMAEANRFRLEAEACKAALAEVAVIPSVPANSIARGVYGDWFHGREFKRFVAKTRERYGDGSDELFVATDVVSQQHRARNGGEGGSVWAVGVKELGQGTFGIVTRLDVLTLGKSYAAKEFKDQGE 479          
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q4_9PHAE)

HSP 1 Score: 604 bits (1558), Expect = 7.930e-213
Identity = 378/476 (79.41%), Postives = 397/476 (83.40%), Query Frame = 1
Query:    1 MLVKAGMMAVISLRATGADDVSGSXXXXXXXXXXXNPPPEKNGRGEMRRPPGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVSLGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKNTEAAREAAAREGCGRAVGCLTVAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVAXXXXXXXXXXXG----GDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKVLCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAEANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKTRERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSEP 1416
            M+VKA MMA+IS  ATG D+ SG            NPPPEKNGRGEMRRPPGLVAPGE + NNHP GLVVPRGGDG GDCRESG R PLMSPLREA+ +S GG+RVKMMV THPP TRPEDVGHGGRTDWGCPP+ QQRQT+ P TGTK+TEAARE                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NRKP TI +L+   +AM  Q VP RADRLLSLP  T AXXXXXXXXXXX     GD GVDCAPPLQAGEQSAT+IRR+VE  Q RKLREEK LCVFMRYRL ISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRD+AEANRFRLEAEACKAALAEVAVIPPVP NSIARGVYGDWFHGRE+NRFVDKTRERYGDGSD+LFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVS+P
Sbjct:    1 MMVKAAMMALISPGATGTDERSGGRCSGSGSGFG-NPPPEKNGRGEMRRPPGLVAPGERLTNNHPCGLVVPRGGDGGGDCRESGCRGPLMSPLREAVAMSFGGRRVKMMVFTHPPSTRPEDVGHGGRTDWGCPPELQQRQTNLPQTGTKSTEAAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRKPPTIPLLRQE-EAMHMQHVPARADRLLSLPRATAAXXXXXXXXXXXTVAARGDTGVDCAPPLQAGEQSATAIRRKVETPQLRKLREEKFLCVFMRYRLIISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDIAEANRFRLEAEACKAALAEVAVIPPVPANSIARGVYGDWFHGREYNRFVDKTRERYGDGSDELFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVTRLDVLTLGKSYAAKEFKDVSKP 474          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1126.1082.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Protein2.670e-23585.50kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Protein1.390e-23286.41kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Protein1.130e-21977.66kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Uncharacterized7.930e-21379.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1126contigEcto-sp9_F_contig1126:545..3684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1419
Cds size1419
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1126.1082.1prot_Ecto-sp9_F_contig1126.1082.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1126 545..3684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.5801387-CDS-Ecto-sp9_F_contig1126:544..8981622928368.5801387-CDS-Ecto-sp9_F_contig1126:544..898Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1126 545..898 -
1692277849.0304034-CDS-Ecto-sp9_F_contig1126:544..8981692277849.0304034-CDS-Ecto-sp9_F_contig1126:544..898Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1126 545..898 -
1622928368.5902967-CDS-Ecto-sp9_F_contig1126:1863..19471622928368.5902967-CDS-Ecto-sp9_F_contig1126:1863..1947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1126 1864..1947 -
1692277849.037684-CDS-Ecto-sp9_F_contig1126:1863..19471692277849.037684-CDS-Ecto-sp9_F_contig1126:1863..1947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1126 1864..1947 -
1622928368.6007316-CDS-Ecto-sp9_F_contig1126:2703..36841622928368.6007316-CDS-Ecto-sp9_F_contig1126:2703..3684Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1126 2704..3684 -
1692277849.046277-CDS-Ecto-sp9_F_contig1126:2703..36841692277849.046277-CDS-Ecto-sp9_F_contig1126:2703..3684Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1126 2704..3684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1126.1082.1

>prot_Ecto-sp9_F_contig1126.1082.1 ID=prot_Ecto-sp9_F_contig1126.1082.1|Name=mRNA_Ecto-sp9_F_contig1126.1082.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=473bp
MLVKAGMMAVISLRATGADDVSGSGGGSGSGSGFGNPPPEKNGRGEMRRP
PGLVAPGEGVINNHPPGLVVPRGGDGVGDCRESGYREPLMSPLREAMEVS
LGGKRVKMMVSTHPPPTRPEDVGHGGRTDWGCPPKPQQRQTSPPHTGTKN
TEAAREAAAREGCGRAVGCLTVAAGAAGGGGHGGSGCGGGAVCAGGGFSD
NGGTGGGNAGHGNRKPLTISVLQHTADAMQKQEVPVRADRLLSLPWTTVA
AAAAAAATAASGGDAGVDCAPPLQAGEQSATSIRRRVEALQPRKLREEKV
LCVFMRYRLEISAENLRGLDRVILASEARRAVVNAEVKAATEAFRRDVAE
ANRFRLEAEACKAALAEVAVIPPVPVNSIARGVYGDWFHGREFNRFVDKT
RERYGDGSDKLFVATDVVSQQHRTRNGGEGGSVWAVGVKELGQGTFGVVT
RLDVLTLGKSYAAKEFKDVSEP*
back to top

mRNA from alignment at Ecto-sp9_F_contig1126:545..3684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1126.1082.1 ID=mRNA_Ecto-sp9_F_contig1126.1082.1|Name=mRNA_Ecto-sp9_F_contig1126.1082.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3140bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1126:545..3684- (Ectocarpus species9 EcSCA_722f female)
ATGCTGGTGAAGGCCGGCATGATGGCGGTGATCTCGCTACGGGCGACGGG AGCAGACGATGTAAGTGGCAGCGGCGGTGGCAGCGGCAGCGGCAGCGGGT TTGGGAACCCGCCTCCGGAAAAAAACGGACGGGGTGAGATGAGAAGGCCT CCCGGGCTAGTGGCGCCAGGGGAAGGAGTGATTAACAACCATCCTCCTGG GCTGGTTGTCCCACGGGGGGGCGACGGCGTTGGCGACTGCAGGGAAAGCG GGTACCGAGAGCCGTTGATGAGCCCGCTCCGTGAAGCGATGGAAGTGTCG TTGGGCGGCAAGCGGGTGAAAATGATGGTCTCCACGCACCCCCCGCCGAC GAGGCCCGAGGACGTTGGCCACGGCGGCCGCACGGATTGGGGTTGCCCTC CGAAACCGCAGCAGCGGCAGACCAGCCCGCCTCACACCGGCACAAAGAAC ACGGAGGCGGCAAGGGAAGCGGCAGCAAGAGAAGGGTGTGGCCGGGCCGT GGGTTGCCTGACGGTGGCGGCGGGAGCGGCGGGCGGCGGCGGCCATGGCG GCAGCGGTTGCGGCGGTGGTGCCGTCTGTGCAGGCGGAGGTTTCAGCGAC AACGGCGGCACCGGCGGCGGCAACGCAGGCCACGGCAACCGGAAACCACT GACGATTTCGGTTCTTCAGCATACTGCAGACGCGATGCAGAAGCAAGAAG TACCGGTGCGCGCTGACAGGCTGCTCTCCTTGCCGTGGACCACAGTAGCA GCAGCAGCAGCAGCAGCAGCAACGGCGGCGTCAGGGGGCGACGCCGGTGT GGACTGCGCTCCCCCCCTGCAGGCCGGCGAGCAGAGCGCGACTTCGATTC GGCGAAGGGTGGAGGCGCTGCAACCAAGGAAGCTGAGGGAGGAGAAGGTT CTCTGCGTGTTCATGCGCTACAGGTTGGAGATATCAGCTGAGAATCTTCG CGGCTTAGACCGTGTAATTCTGGCGAGCGAGGTAAGACGAAAAATGTTGG GTATTTCAACAACGTGAAACCTGGAAGCTTGTTTTGTTTATGTACAGTCT GATGTTTGGCGTTTTTCGTTTGAGGCGCCACTTCTGACGGAGGTACGTGG AACGTTCCCAAGGCGTTTGGTTAGAGCTGCTGAAGGTGAATTCTCTCCGT CTCCATTGTTGCTGCCGTTGTTGTTGTTGCTGTTGTTGTTGTTGTCGTTG TTATCGTTGTTGTCGTTGTCGTTGCATTGTTTCTTCTTCAAAGATGCCCT AGCAAACTGTACTCAATTTAACAAATAACGCGTGCCCCCGCAATGCTAAC CTGAGCGCATGGTCTACGAGAGCTGTCTACGCGAAACAAATACACCAAGG CTACGATTCACGCCAGCAAGGGACAAAGCCAACCCTCCGTCCCCTTCATC CCCTCGATACACGGGGACCGTTCAGAGTGTGCCGTTGTTGTTTTGGTGGC ATTGGTTGGCACATAGCGACCCCCCACCGTAGCCCTACACTACACGCATC GATGTTGGCGGCACCATCCCACCAGTCACGTCTCGCACAACAGCAGGGCT AAATATTTGATTGTTCACCAACCTTTAAGGCTACCCTCCCTTCCTTCGAA CGAAATGCCGTTGATAGGACAACGTACTAAATAGTCGGAGCACTGCCACA GGTGTTGAGTATTGATGCGCTAACAAGATGAACCGGAAACGCTAAAACAT CCACGTGCATTCAACCGCCCATCGAATTTCCGACCAGGCGAGACGAGCGG TCGTCAATGCAGAGGTGAAGGCCGCCACCGAGGCCTTCCGGCGGGACGTT GCCGAGGCCAACCGATTCAGGGTGAGAGGGAGGGAGTGAAGGTGTCACGG TTGTATATACATGCAAGTCATCATCACCTTGTATCCCTCGAGTGTGCAAC TAACAGATCGTCGTTTGCGCACCATTCCACATGCTTGCCACAGTACTCAT TTTTAACTCCCTCCCTCTCACCCTGAGTCGGTTTCCTGCGGCCACCGCCG GCTGGAATTCCTCGGTGGCGATTTTCTCCTGCTCGTTCAGGAGCCTGGTC GAATTGTGGTGACGTGCCTTTTTTCCCCCCGCCCTTGACAGTGTCTGATG GGGTCAGCTTGTTTTTGGGTATGAAGCGCTTGTTGCGCCTGAACCTTTTT GGCACGCATCCGTAGTATTGTAATTTTTAAACTTCCCCGCCGCCAAAATC GAAGGGTGATGCATCGCCCTCTTCGCTGAACCAAATGGACACCAGCAAAC GCAACAATCTACACGTCCTACCTTACAACTCCCGCCCCACCCCGTCAAGC CTGCTCGCACTCTTCGTATGCATACAAATCCCGTCCCATTTTTGCGGATT AGAGGCAGCGGCAATGGGGGCAGCATCTGTAGCACGATGCTGATACACCT GGACTTGTCTTTTTCCGCCCTTTGTTTGGCTCTCTTCCTTGCTCCCCACC CTCCATCCCTACACCCGGATCCTTGATTTGAACACCATTTCCTTCCTAGC TGGGGTACTTGTGGGTCTTGCGCATGAAGCCTTGAGTTCCCTTGTCAGCC GACCCCCCCTCCCGGTAAAGACACAACACCTGTAGCGGCGTATATCACAA TATCGGCAATCAACCCGCCGTCCGGGTGGCAGGCTGTTAGTTTCGTAGGC TTGCCAGGAGTGCCAAAACGTTGAACGGTTCTCCATCCCACGACCGCTCG TTGTTTAATCTCTATATAATACCCCCTGCATGAATCTGAACGATCAACCT GCGCCACCGGTATCTCCCGTCCCAAAACCCAAACAGTTGGAAGCAGAGGC CTGCAAGGCAGCGCTGGCGGAAGTCGCCGTGATACCCCCCGTACCCGTCA ACTCCATCGCCCGGGGAGTGTACGGAGACTGGTTCCATGGACGAGAGTTC AACAGGTTCGTCGACAAGACTCGGGAGCGCTACGGCGACGGGTCGGACAA GCTCTTCGTGGCCACCGACGTGGTTAGTCAGCAGCACCGGACTCGGAACG GGGGCGAGGGCGGCAGCGTCTGGGCCGTGGGCGTGAAAGAGCTCGGGCAG GGGACCTTCGGAGTCGTGACCCGGCTCGACGTTCTCACCCTGGGCAAGAG CTACGCCGCTAAGGAGTTCAAGGATGTGAGTGAGCCTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1126:545..3684-

>mRNA_Ecto-sp9_F_contig1126.1082.1 ID=mRNA_Ecto-sp9_F_contig1126.1082.1|Name=mRNA_Ecto-sp9_F_contig1126.1082.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2838bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1126:545..3684- (Ectocarpus species9 EcSCA_722f female)
ATGCTGGTGAAGGCCGGCATGATGGCGGTGATCTCGCTACGGGCGACGGG
AGCAGACGATGTAAGTGGCAGCGGCGGTGGCAGCGGCAGCGGCAGCGGGT
TTGGGAACCCGCCTCCGGAAAAAAACGGACGGGGTGAGATGAGAAGGCCT
CCCGGGCTAGTGGCGCCAGGGGAAGGAGTGATTAACAACCATCCTCCTGG
GCTGGTTGTCCCACGGGGGGGCGACGGCGTTGGCGACTGCAGGGAAAGCG
GGTACCGAGAGCCGTTGATGAGCCCGCTCCGTGAAGCGATGGAAGTGTCG
TTGGGCGGCAAGCGGGTGAAAATGATGGTCTCCACGCACCCCCCGCCGAC
GAGGCCCGAGGACGTTGGCCACGGCGGCCGCACGGATTGGGGTTGCCCTC
CGAAACCGCAGCAGCGGCAGACCAGCCCGCCTCACACCGGCACAAAGAAC
ACGGAGGCGGCAAGGGAAGCGGCAGCAAGAGAAGGGTGTGGCCGGGCCGT
GGGTTGCCTGACGGTGGCGGCGGGAGCGGCGGGCGGCGGCGGCCATGGCG
GCAGCGGTTGCGGCGGTGGTGCCGTCTGTGCAGGCGGAGGTTTCAGCGAC
AACGGCGGCACCGGCGGCGGCAACGCAGGCCACGGCAACCGGAAACCACT
GACGATTTCGGTTCTTCAGCATACTGCAGACGCGATGCAGAAGCAAGAAG
TACCGGTGCGCGCTGACAGGCTGCTCTCCTTGCCGTGGACCACAGTAGCA
GCAGCAGCAGCAGCAGCAGCAACGGCGGCGTCAGGGGGCGACGCCGGTGT
GGACTGCGCTCCCCCCCTGCAGGCCGGCGAGCAGAGCGCGACTTCGATTC
GGCGAAGGGTGGAGGCGCTGCAACCAAGGAAGCTGAGGGAGGAGAAGGTT
CTCTGCGTGTTCATGCGCTACAGGTTGGAGATATCAGCTGAGAATCTTCG
CGGCTTAGACCGTGTAATTCTGGCGAGCGAGATGCTGGTGAAGGCCGGCA
TGATGGCGGTGATCTCGCTACGGGCGACGGGAGCAGACGATGTAAGTGGC
AGCGGCGGTGGCAGCGGCAGCGGCAGCGGGTTTGGGAACCCGCCTCCGGA
AAAAAACGGACGGGGTGAGATGAGAAGGCCTCCCGGGCTAGTGGCGCCAG
GGGAAGGAGTGATTAACAACCATCCTCCTGGGCTGGTTGTCCCACGGGGG
GGCGACGGCGTTGGCGACTGCAGGGAAAGCGGGTACCGAGAGCCGTTGAT
GAGCCCGCTCCGTGAAGCGATGGAAGTGTCGTTGGGCGGCAAGCGGGTGA
AAATGATGGTCTCCACGCACCCCCCGCCGACGAGGCCCGAGGACGTTGGC
CACGGCGGCCGCACGGATTGGGGTTGCCCTCCGAAACCGCAGCAGCGGCA
GACCAGCCCGCCTCACACCGGCACAAAGAACACGGAGGCGGCAAGGGAAG
CGGCAGCAAGAGAAGGGTGTGGCCGGGCCGTGGGTTGCCTGACGGTGGCG
GCGGGAGCGGCGGGCGGCGGCGGCCATGGCGGCAGCGGTTGCGGCGGTGG
TGCCGTCTGTGCAGGCGGAGGTTTCAGCGACAACGGCGGCACCGGCGGCG
GCAACGCAGGCCACGGCAACCGGAAACCACTGACGATTTCGGTTCTTCAG
CATACTGCAGACGCGATGCAGAAGCAAGAAGTACCGGTGCGCGCTGACAG
GCTGCTCTCCTTGCCGTGGACCACAGTAGCAGCAGCAGCAGCAGCAGCAG
CAACGGCGGCGTCAGGGGGCGACGCCGGTGTGGACTGCGCTCCCCCCCTG
CAGGCCGGCGAGCAGAGCGCGACTTCGATTCGGCGAAGGGTGGAGGCGCT
GCAACCAAGGAAGCTGAGGGAGGAGAAGGTTCTCTGCGTGTTCATGCGCT
ACAGGTTGGAGATATCAGCTGAGAATCTTCGCGGCTTAGACCGTGTAATT
CTGGCGAGCGAGGCGAGACGAGCGGTCGTCAATGCAGAGGTGAAGGCCGC
CACCGAGGCCTTCCGGCGGGACGTTGCCGAGGCCAACCGATTCAGGGCGA
GACGAGCGGTCGTCAATGCAGAGGTGAAGGCCGCCACCGAGGCCTTCCGG
CGGGACGTTGCCGAGGCCAACCGATTCAGGTTGGAAGCAGAGGCCTGCAA
GGCAGCGCTGGCGGAAGTCGCCGTGATACCCCCCGTACCCGTCAACTCCA
TCGCCCGGGGAGTGTACGGAGACTGGTTCCATGGACGAGAGTTCAACAGG
TTCGTCGACAAGACTCGGGAGCGCTACGGCGACGGGTCGGACAAGCTCTT
CGTGGCCACCGACGTGGTTAGTCAGCAGCACCGGACTCGGAACGGGGGCG
AGGGCGGCAGCGTCTGGGCCGTGGGCGTGAAAGAGCTCGGGCAGGGGACC
TTCGGAGTCGTGACCCGGCTCGACGTTCTCACCCTGGGCAAGAGCTACGC
CGCTAAGGAGTTCAAGGATGTGAGTGAGCCTTAGTTGGAAGCAGAGGCCT
GCAAGGCAGCGCTGGCGGAAGTCGCCGTGATACCCCCCGTACCCGTCAAC
TCCATCGCCCGGGGAGTGTACGGAGACTGGTTCCATGGACGAGAGTTCAA
CAGGTTCGTCGACAAGACTCGGGAGCGCTACGGCGACGGGTCGGACAAGC
TCTTCGTGGCCACCGACGTGGTTAGTCAGCAGCACCGGACTCGGAACGGG
GGCGAGGGCGGCAGCGTCTGGGCCGTGGGCGTGAAAGAGCTCGGGCAGGG
GACCTTCGGAGTCGTGACCCGGCTCGACGTTCTCACCCTGGGCAAGAGCT
ACGCCGCTAAGGAGTTCAAGGATGTGAGTGAGCCTTAG
back to top