mRNA_Ecto-sp9_F_contig11252.1081.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11252.1081.1
Unique NamemRNA_Ecto-sp9_F_contig11252.1081.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11252.1081.1 vs.
Match: Whsc1 (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 8.850e-88
Identity = 151/156 (96.79%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:    3 PMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDAAKEFQAYIQGGDTAAEATAMREGTPXXXXXXXSAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWT 470
            PMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELE LMRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDA KEFQAYIQGGDTA EATAMREGTPXXXXXX SAGLVLASAGRRLGFEASLVERLGRLVCEG LIEVVDVHKEDTMLRRALWT
Sbjct: 1073 PMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELEALMRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDAVKEFQAYIQGGDTA-EATAMREGTPXXXXXX-SAGLVLASAGRRLGFEASLVERLGRLVCEGVLIEVVDVHKEDTMLRRALWT 1226
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BLAST of mRNA_Ecto-sp9_F_contig11252.1081.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 5.070e-85
Identity = 142/156 (91.03%), Postives = 145/156 (92.95%), Query Frame = 3 
Query:    3 PMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDAAKEFQAYIQGGDTAAEATAMREGTPXXXXXXXSAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWT 470
            PMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMR+ADSLPVDGVDGQAYLNYMV QVVGWRDRCEDA K+FQAYIQGGDTA EATAM+ GTP       SAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWT
Sbjct:  936 PMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMRNADSLPVDGVDGQAYLNYMVVQVVGWRDRCEDAVKDFQAYIQGGDTA-EATAMKGGTPTPPTP--SAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWT 1088
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11252.1081.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Whsc18.850e-8896.79protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.070e-8591.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11252contigEcto-sp9_F_contig11252:1258..3571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.1
Seed ortholog evalue2.4e-75
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size472
Cds size465
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11252.1081.1prot_Ecto-sp9_F_contig11252.1081.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11252 1263..3571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.5070946-UTR-Ecto-sp9_F_contig11252:1257..12621622928368.5070946-UTR-Ecto-sp9_F_contig11252:1257..1262Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11252 1258..1262 +
1692277848.9774165-UTR-Ecto-sp9_F_contig11252:1257..12621692277848.9774165-UTR-Ecto-sp9_F_contig11252:1257..1262Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11252 1258..1262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.5213017-CDS-Ecto-sp9_F_contig11252:1262..13171622928368.5213017-CDS-Ecto-sp9_F_contig11252:1262..1317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 1263..1317 +
1692277848.9894-CDS-Ecto-sp9_F_contig11252:1262..13171692277848.9894-CDS-Ecto-sp9_F_contig11252:1262..1317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 1263..1317 +
1622928368.5309234-CDS-Ecto-sp9_F_contig11252:1760..18721622928368.5309234-CDS-Ecto-sp9_F_contig11252:1760..1872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 1761..1872 +
1692277849.0026133-CDS-Ecto-sp9_F_contig11252:1760..18721692277849.0026133-CDS-Ecto-sp9_F_contig11252:1760..1872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 1761..1872 +
1622928368.5399976-CDS-Ecto-sp9_F_contig11252:2384..26521622928368.5399976-CDS-Ecto-sp9_F_contig11252:2384..2652Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 2385..2652 +
1692277849.0129354-CDS-Ecto-sp9_F_contig11252:2384..26521692277849.0129354-CDS-Ecto-sp9_F_contig11252:2384..2652Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 2385..2652 +
1622928368.5490313-CDS-Ecto-sp9_F_contig11252:3541..35711622928368.5490313-CDS-Ecto-sp9_F_contig11252:3541..3571Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 3542..3571 +
1692277849.0224183-CDS-Ecto-sp9_F_contig11252:3541..35711692277849.0224183-CDS-Ecto-sp9_F_contig11252:3541..3571Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11252 3542..3571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11252.1081.1

>prot_Ecto-sp9_F_contig11252.1081.1 ID=prot_Ecto-sp9_F_contig11252.1081.1|Name=mRNA_Ecto-sp9_F_contig11252.1081.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
MCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMRHADSLPVDGVD
GQAYLNYMVDQVVGWRDRCEDAAKEFQAYIQGGDTAAEATAMREGTPPPP
PPPPSAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLR
RALWT
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mRNA from alignment at Ecto-sp9_F_contig11252:1258..3571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11252.1081.1 ID=mRNA_Ecto-sp9_F_contig11252.1081.1|Name=mRNA_Ecto-sp9_F_contig11252.1081.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2314bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11252:1258..3571+ (Ectocarpus species9 EcSCA_722f female)
GTCCCATGTGCGAGCACCGCAGGGGCGGCGTGTCCAACTTCGCCTGTCCT
CCCTCTCCGGGTACGTACCGTACCTCCGTACCGTAGGAGGCATCGCCGGT
CTGTGTTTGGGTGATGCGTGTGGTATTATAGGATAGGATGAGCGGTCGGC
CAAGCTCGGGCAAGAGATGGGTCCGCTAGATGGCTAGGATCAGATTTTTA
GGTGCAGCGATGCGATGGAGAGTGCCGTTTCTTTCTTTTTTTTTTTAGTG
GCTGTCTGAAGGGGGTGGTACTCCTTTTTATCCCAGAAATCGTTGAACGG
ATCGCAATGAACAGTTGACGGGGTTTTTTTCGAAGGCCCGATAGGCAGCA
TGCTCAATAGATTGAATCGACAAGAATGCGCAAACGGATGTAGTCTTCAG
GAACAAACCGGCGTCAATGCCTCCCAAAATAGTGTTTGTGCCCGCGGCGG
ACTGAACTGCTTCTGCTTCACTCGGCCCTCATCCTCATATTCCGGTGTGG
CAGGTTTCTACATCGGGAGGCGGATGCACCGCCCGGGGCTGTCGGAGCTG
GAGACCCTCATGAGGCACGCCGACAGCCTGCCCGTGGATGGCGTGGACGG
CCAAGCTTACCTTAAGTACGTGATGATTTAGTGCACAGTCGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGGCAGC
GGTCGCAGCAGCAGTCGCGGTGTGTTTGCTTGCTTCGAGTGCTATGCTGG
CAGCATCAACGTGAGGTACAAGTGCGGTAGTTTTTTTCCTCTTGTGCCTT
GCCGCGGGAGTTCTTGGCATTCATGTTTTTGTCTTATGAATCTCGGAGGA
TGATTTTTGCTTACACAGGGTTACAGGGGTACGTTGTACAAGCTTGGTTC
GCCCACCCGCAACGCCGCTCCCGCGGGCGTGGGCCGCATGTTTTTCGCGT
TGTTGGCAGGGGGGGGGAGCGCGGCTACGCTATGGAGCGCTGCCCGGGTA
CAGCAGCCACTTCCCTCGTGTTGTTTGATGTCTTGTGCTCTCTTCTTTTT
GACCCGCTTAGGGACTATGTAACCGGTTGCTCATTTTCTGCCTCTATTGT
TTGGCCCCGCTCTCGATGCTGTCACAGCTACATGGTGGACCAGGTGGTGG
GTTGGAGGGACCGGTGTGAAGACGCCGCGAAGGAGTTCCAGGCGTACATC
CAGGGCGGGGACACGGCAGCAGAAGCAACGGCGATGAGGGAAGGGACACC
CCCCCCGCCGCCGCCGCCGCCTTCGGCAGGGCTCGTGCTTGCCTCCGCAG
GGCGAAGGCTTGGGTTTGAGGCCTCGCTCGTGGAGAGGCTGGGCAGGCTG
GTGTGCGAGGGGGCCCTGATCGAGGTGGTAGACGTACACAAAGAGGTATT
GTACGTGTATTCGTGTTTTTTTTGTTTGTTTGCTTCGACAGCGCTATAAC
CGGCTGGCCAATGACAACGCCCGCAGCCTTACCGTGTTTGTGTGAGCGAT
TTTTTATAAAAACCCGGGGGTAGCGCTGGCCTCGTCTGAAGCCCTGTGCC
CTTTTCCCCCAAAGAGGCGGACATCTTTGGGGTCAGAATTTTCGATTTGC
ATCGACAGCGCTAACCGGGTGGACCAAAGGCAACACCGCAGCCTTGCGAT
GTTCGTGTGAGTGTTTTTTTTTTCTTCAATTTTCGTCGACGGCGCTAGCC
GGCTGGACCAATGGCAACACGTCAGTCTCATGGCAGTATGGGAAACGCCA
ATACGCTTTCTAATCAAAGCGTTTTACCGGCTAGCGGAGGGTGCAGGGGT
GCACGTGTATGTGTGTGTGTTTCTTGCTTAGCATCGACGGCGTTCCCTGG
CTGACCAGTGAATGACGGCGGTCTAATAGCGGGGAAATAAAACCGAGAAG
TTGCGTCCGGGGACCGTTGCTGGGCCTGGTGATTTTTTTCGTTTGTTGAG
ACGGACGTGTCGTGCGACAATAAAATATGTTTGTCCTCACCATGCTCCAC
GTCATTGTGTTTTTTCGTAGAGTGTCCAATGCGTGCCTTACGCGTTGATG
ATGGTCGACGTACACCAGCACCTGTTCAACACCGTGCTTGGCCGGCAGCA
ATAGAGATCGAGGCATGTGCAAAAATTTTAAATTCACTTGAACGCCCCTT
CGATCTCATCCCATATGCAGGACACTTGGGTCCTTTTTACCTCGCCGCGT
GCAATTGCGATTTCGTCAGGTTTGCAAGTTGTCGCACCGATGCATCGCGC
TTGTGTGTTCTGTGCGCCCCTCCTTGCCGCGCAGGACACCATGCTGCGAA
GAGCCCTCTGGACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11252:1258..3571+

>mRNA_Ecto-sp9_F_contig11252.1081.1 ID=mRNA_Ecto-sp9_F_contig11252.1081.1|Name=mRNA_Ecto-sp9_F_contig11252.1081.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11252:1258..3571+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCGAGCACCGCAGGGGCGGCGTGTCCAACTTCGCCTGTCCTCCCTC
TCCGGATGTGCGAGCACCGCAGGGGCGGCGTGTCCAACTTCGCCTGTCCT
CCCTCTCCGGGTTTCTACATCGGGAGGCGGATGCACCGCCCGGGGCTGTC
GGAGCTGGAGACCCTCATGAGGCACGCCGACAGCCTGCCCGTGGATGGCG
TGGACGGCCAAGCTTACCTTAAGTTTCTACATCGGGAGGCGGATGCACCG
CCCGGGGCTGTCGGAGCTGGAGACCCTCATGAGGCACGCCGACAGCCTGC
CCGTGGATGGCGTGGACGGCCAAGCTTACCTTAACTACATGGTGGACCAG
GTGGTGGGTTGGAGGGACCGGTGTGAAGACGCCGCGAAGGAGTTCCAGGC
GTACATCCAGGGCGGGGACACGGCAGCAGAAGCAACGGCGATGAGGGAAG
GGACACCCCCCCCGCCGCCGCCGCCGCCTTCGGCAGGGCTCGTGCTTGCC
TCCGCAGGGCGAAGGCTTGGGTTTGAGGCCTCGCTCGTGGAGAGGCTGGG
CAGGCTGGTGTGCGAGGGGGCCCTGATCGAGGTGGTAGACGTACACAAAG
AGCTACATGGTGGACCAGGTGGTGGGTTGGAGGGACCGGTGTGAAGACGC
CGCGAAGGAGTTCCAGGCGTACATCCAGGGCGGGGACACGGCAGCAGAAG
CAACGGCGATGAGGGAAGGGACACCCCCCCCGCCGCCGCCGCCGCCTTCG
GCAGGGCTCGTGCTTGCCTCCGCAGGGCGAAGGCTTGGGTTTGAGGCCTC
GCTCGTGGAGAGGCTGGGCAGGCTGGTGTGCGAGGGGGCCCTGATCGAGG
TGGTAGACGTACACAAAGAGGACACCATGCTGCGAAGAGCCCTCTGGACC
GACACCATGCTGCGAAGAGCCCTCTGGACC
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