mRNA_Ecto-sp9_F_contig11244.1072.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11244.1072.1
Unique NamemRNA_Ecto-sp9_F_contig11244.1072.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.530e-67
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    1 KRSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWVDALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKQQEA 321
            KRSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDW DALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLK QEA
Sbjct: 2038 KRSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWADALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKHQEA 2144
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.680e-58
Identity = 96/107 (89.72%), Postives = 96/107 (89.72%), Query Frame = 1 
Query:    1 KRSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWVDALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKQQEA 321
            KRSKRCGICV          KYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDW DALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKQQEA
Sbjct: 1672 KRSKRCGICVXXXXXXXXXXKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWADALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKQQEA 1778
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Uncharacterized (protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5TSK9_9CNID)

HSP 1 Score: 57.4 bits (137), Expect = 2.590e-7
Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRN--LPGDAIDWVDALLPDPRANGGGGGGEL--ECEYCFKMEKELC 258
            R  RC  C GC  + C++C++CLD KKN G  KL+Q C  R C N  LP     +V   + D R +     GEL  EC  C ++    C
Sbjct:  617 RRVRCHQCKGCSRENCNKCRFCLDMKKNGGEGKLRQSCAMRFCENPQLP----SYVVCNVCDSRED-----GELLMECHVCSEVVHPAC 696
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Chromatin-remodeling (ATPase INO80 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNF5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.300e-6
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC 132
            R  RCG+CVGC A  C +C++CLD KK  GP   KQ C  R+C
Sbjct:  938 RVMRCGVCVGCLAPDCMKCRHCLDMKKYGGPGLRKQSCKSRKC 980
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Chromatin-remodeling (ATPase INO80 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU59_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.870e-6
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC 132
            R  RCG+CVGC A  C +C++C+D KK  GP   KQ C  R+C
Sbjct:  978 RVMRCGVCVGCLAPDCLKCRHCMDMKKYGGPGLRKQSCKSRKC 1020
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Chromatin-remodeling (ATPase INO80 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K952_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.020e-6
Identity = 26/70 (37.14%), Postives = 36/70 (51.43%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC-----------RNLPGDAIDWVDALLP 180
            R  RCG+CVGC A  C +C++C D KK  GP   KQ C  R+C           +   GD + + ++L P
Sbjct:  998 RVMRCGVCVGCLAPDCMKCRHCQDMKKYGGPGLRKQSCKSRKCVTPKVVLLNQGQEEDGDMLIYEESLTP 1067
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Chromatin-remodeling (ATPase INO80 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5Z7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-5
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC 132
            R  RCG+CVGC A  C +C++C D KK  GP   KQ C  R+C
Sbjct:  980 RVMRCGVCVGCLAPDCMKCRHCQDMKKYGGPGLRKQSCKSRKC 1022
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Chromatin-remodeling (ATPase INO80 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YAC6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.750e-5
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC 132
            R  RCG+CVGC A  C +C++C D KK  GP   KQ C  R+C
Sbjct:  810 RVMRCGVCVGCLAGDCLKCRHCQDMKKYGGPGLRKQSCKSRKC 852
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Chromatin-remodeling (ATPase INO80 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKV2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-5
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC 132
            R  RCG+CVGC A  C +C++C D KK  GP   KQ C  R+C
Sbjct: 1044 RVMRCGVCVGCLAGDCLKCRHCQDMKKYGGPGLRKQSCKSRKC 1086
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DL03_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.500e-5
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    4 RSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRC 132
            R  RCG+CVGC A  C +C++C D KK  GP   KQ C  R+C
Sbjct:  178 RVMRCGVCVGCVAGDCLKCRHCQDMKKYGGPGLRKQSCKSRKC 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11244.1072.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
Uncharacterized2.530e-6798.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.680e-5889.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.590e-738.20protein n=1 Tax=Clytia hemisphaerica TaxID=252671 ... [more]
Chromatin-remodeling2.300e-653.49ATPase INO80 n=1 Tax=Thraustotheca clavata TaxID=7... [more]
Chromatin-remodeling5.870e-651.16ATPase INO80 n=1 Tax=Aphanomyces euteiches TaxID=1... [more]
Chromatin-remodeling8.020e-637.14ATPase INO80 n=1 Tax=Aphanomyces stellatus TaxID=1... [more]
Chromatin-remodeling1.490e-551.16ATPase INO80 n=1 Tax=Achlya hypogyna TaxID=1202772... [more]
Chromatin-remodeling2.750e-551.16ATPase INO80 n=1 Tax=Aphanomyces invadans TaxID=15... [more]
Chromatin-remodeling2.790e-551.16ATPase INO80 n=1 Tax=Aphanomyces invadans TaxID=15... [more]
Uncharacterized3.500e-551.16protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11244contigEcto-sp9_F_contig11244:3287..3966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue4.1e-50
Seed eggNOG ortholog2880.D8LI13
EggNOG free text desc.mRNA processing
EggNOG OGsKOG0825@1,KOG0825@2759
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928367.4371347-CDS-Ecto-sp9_F_contig11244:3286..34511622928367.4371347-CDS-Ecto-sp9_F_contig11244:3286..3451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 3287..3451 +
1692277848.5218525-CDS-Ecto-sp9_F_contig11244:3286..34511692277848.5218525-CDS-Ecto-sp9_F_contig11244:3286..3451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 3287..3451 +
1622928367.4524252-CDS-Ecto-sp9_F_contig11244:3809..39651622928367.4524252-CDS-Ecto-sp9_F_contig11244:3809..3965Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 3810..3965 +
1692277848.5353348-CDS-Ecto-sp9_F_contig11244:3809..39651692277848.5353348-CDS-Ecto-sp9_F_contig11244:3809..3965Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11244 3810..3965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11244.1072.1prot_Ecto-sp9_F_contig11244.1072.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11244 3287..3965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11244.1072.1

>prot_Ecto-sp9_F_contig11244.1072.1 ID=prot_Ecto-sp9_F_contig11244.1072.1|Name=mRNA_Ecto-sp9_F_contig11244.1072.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
KRSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGD
AIDWVDALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAET
FLKQQEA
back to top

mRNA from alignment at Ecto-sp9_F_contig11244:3287..3966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11244.1072.1 ID=mRNA_Ecto-sp9_F_contig11244.1072.1|Name=mRNA_Ecto-sp9_F_contig11244.1072.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11244:3287..3966+ (Ectocarpus species9 EcSCA_722f female)
AAGCGCAGCAAGCGGTGTGGGATCTGCGTGGGATGCCGCGCCAAGGCGTG
CGACCGTTGCAAGTACTGCCTGGACTCGAAGAAGAACAACGGGCCCAACA
AGCTCAAGCAGCCGTGCATCAAGCGCCGCTGCCGCAACCTCCCCGGCGAC
GCGATCGACTGGGTGGTAAGGAGCTGCGAGTGAAGGGGCTGTTATTGTCA
GCCAGTCGATGCCTGTTGATCTTGAGTTTGAAGTGCTACTTTTTACATAT
CCAGGCAAGGGGGGGGGGGGGGGGCACGCGGATAAGGGGTTGGCAGTCCT
CGATAATAGCCGCCGGTCCCCCGTTACATGCCCCTGCTCAAGTCATCAAA
GCTATCTAAGGTATTAATTCATGTTGATTTTTTGTTTGTTTAAAACGTTG
CGGGACAATTGAATGCTCCAGTGTTCCCTGCAGCACGTGGACTCGAAGTC
ACGAGCGCAATTGGCTCGCTTGTCCTGGTCTCGACGCACGCCTTTTGTTT
CTTCTTCCCTCCGTGCGTTCCAGGACGCCCTTTTGCCCGATCCGAGAGCC
AACGGCGGTGGTGGCGGCGGGGAGCTGGAGTGCGAATACTGCTTCAAGAT
GGAGAAGGAGCTGTGCAGCCCGATGGTGGTGGACTTGAGCCCGGAGGAAG
CGGAAACGTTCCTCAAGCAGCAGGAGGCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11244:3287..3966+

>mRNA_Ecto-sp9_F_contig11244.1072.1 ID=mRNA_Ecto-sp9_F_contig11244.1072.1|Name=mRNA_Ecto-sp9_F_contig11244.1072.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11244:3287..3966+ (Ectocarpus species9 EcSCA_722f female)
AAGCGCAGCAAGCGGTGTGGGATCTGCGTGGGATGCCGCGCCAAGGCGTG
CGACCGTTGCAAGTACTGCCTGGACTCGAAGAAGAACAACGGGCCCAACA
AGCTCAAGCAGCCGTGCATCAAGCGCCGCTGCCGCAACCTCCCCGGCGAC
GCGATCGACTGGGTGAAGCGCAGCAAGCGGTGTGGGATCTGCGTGGGATG
CCGCGCCAAGGCGTGCGACCGTTGCAAGTACTGCCTGGACTCGAAGAAGA
ACAACGGGCCCAACAAGCTCAAGCAGCCGTGCATCAAGCGCCGCTGCCGC
AACCTCCCCGGCGACGCGATCGACTGGGTGGACGCCCTTTTGCCCGATCC
GAGAGCCAACGGCGGTGGTGGCGGCGGGGAGCTGGAGTGCGAATACTGCT
TCAAGATGGAGAAGGAGCTGTGCAGCCCGATGGTGGTGGACTTGAGCCCG
GAGGAAGCGGAAACGTTCCTCAAGCAGCAGGAGGCGGACGCCCTTTTGCC
CGATCCGAGAGCCAACGGCGGTGGTGGCGGCGGGGAGCTGGAGTGCGAAT
ACTGCTTCAAGATGGAGAAGGAGCTGTGCAGCCCGATGGTGGTGGACTTG
AGCCCGGAGGAAGCGGAAACGTTCCTCAAGCAGCAGGAGGCG
back to top