mRNA_Ecto-sp9_F_contig11237.1063.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11237.1063.1
Unique NamemRNA_Ecto-sp9_F_contig11237.1063.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA2, (alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL8_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 3.730e-146
Identity = 205/224 (91.52%), Postives = 211/224 (94.20%), Query Frame = 1
Query:    7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKASGERGKRRVYYEAV 678
            +VVDQDA+GLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQP+YVATPQDILHIRIRSSGIVVDKY IDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYF  SSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEK +     ++  Y  V
Sbjct:   97 QVVDQDAIGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPEYVATPQDILHIRIRSSGIVVDKYRIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFKRSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKFNAANTAKKTVYHHV 320          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D1_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 6.040e-146
Identity = 208/218 (95.41%), Postives = 210/218 (96.33%), Query Frame = 1
Query:    7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKA--SGERGK 654
            +VVDQDAM LIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNS F  SSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKA   GE G+
Sbjct:   97 QVVDQDAMRLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSCFERSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKAIQRGEHGQ 314          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: G-protein (complex alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U751_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.130e-84
Identity = 126/227 (55.51%), Postives = 170/227 (74.89%), Query Frame = 1
Query:    7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGAC-TFDRGVSYFLEKASG--ERGKRRVYYEAV 678
            +++DQDA+ LI ++ D   ID K+G AI  LW D  IQKTW +RSE+Q++ES+KY+ + +  I +P Y+A+  DIL+ R+R+SGIV ++Y IDGT FEMYDVGGQRNERKKWIHCFDNVTA+I+VAALSEY+Q +FED++TNRM EA+ LF+ IC+N +FA+SS++LFLNKKDLFAEK+    I    ++SD+KG    FD GV YF+    G  +R   ++ Y  V
Sbjct:   99 EILDQDAIDLINTIPD-TDIDLKIGSAIKTLWKDDAIQKTWARRSEFQIVESVKYYFNKIDEISEPDYLASDDDILYARVRTSGIVTERYMIDGTMFEMYDVGGQRNERKKWIHCFDNVTAIIFVAALSEYDQVLFEDSSTNRMIEAIQLFKEICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGVPQFSDYKGCLGDFDAGVDYFVNLFLGVNDRPNEKIIYNHV 324          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA)

HSP 1 Score: 260 bits (665), Expect = 3.560e-83
Identity = 121/204 (59.31%), Postives = 159/204 (77.94%), Query Frame = 1
Query:   19 QDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGAC-TFDRGVSYFL 627
            ++A+  I  L+D A ID +VGQA+  LW DP I KTW++R+E+Q++ES+KY+ + + RIMQP Y+A  QD+L+ R+R+SGIV ++Y IDG+ FEMYDVGGQRNERKKWIHCFD+VTAVI+VAALSEY+Q +FEDA+TNRM EA+ LF  IC+N YF +SS+ILFLNK+DLFAEK+    I     ++DF G    F+ GV YFL
Sbjct:  103 KEALKKISLLDDNADIDMEVGQAVKDLWSDPGILKTWDRRAEFQIVESVKYYFNEIDRIMQPDYLANQQDVLYARVRTSGIVTERYMIDGSIFEMYDVGGQRNERKKWIHCFDDVTAVIFVAALSEYDQSLFEDASTNRMVEAIELFAEICNNRYFHNSSMILFLNKRDLFAEKIMVKDIKQVSHFNDFPGGLGDFELGVQYFL 306          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU9_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.910e-82
Identity = 124/227 (54.63%), Postives = 162/227 (71.37%), Query Frame = 1
Query:    7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACT-FDRGVSYFLEK--ASGERGKRRVYYEAV 678
            ++ DQ +  ++   ED AP+D ++G A+ A+W D  +QKTW +R+EYQ++ESM Y+LD + RI  P YVA   D+LH+RIRSSG+VVD+Y IDG TFEMYDVGGQRNERKKWIHCFDNVTA+IYVAALSEY+QG++EDA TNRM EA++LF+ I  N +F  SS+ILFLNKKDLF  K+    I     +SD+ G  +    G +YFL+K  A      + VY+   
Sbjct:   98 EIEDQTSAEMLTYCEDTAPVDAELGAAVKAVWADAAVQKTWFRRNEYQIVESMSYYLDSIDRISAPDYVADINDVLHVRIRSSGVVVDRYTIDGFTFEMYDVGGQRNERKKWIHCFDNVTAIIYVAALSEYDQGLYEDAQTNRMVEAISLFREIAHNPFFIHSSLILFLNKKDLFEAKVKVRNIADVPHFSDYGGPRSDHAAGTTYFLKKFLAHARSEDQAVYHHVT 324          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV5_9STRA)

HSP 1 Score: 258 bits (659), Expect = 2.700e-82
Identity = 118/222 (53.15%), Postives = 162/222 (72.97%), Query Frame = 1
Query:   22 DAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKG-ACTFDRGVSYFLEKASGERG--KRRVYYEAV 678
            DA   ++S E+ A ID  +G+A+  +W DP++Q  WEK++EYQ++ES+K+F D + RI    Y ATPQD+++ R+R++GIV D+Y IDGTTFEMYDVGGQRNERKKWIHCFDNVTAV++VA++SEY+Q +FEDANTNR+ EA+ LF   C+N YF SSSIIL LNK+DL+  K+    IN    + D+ G A   D G+ YF++K   ++G  K+ +Y   V
Sbjct:  103 DAFETVKSCEESAVIDPPLGKALKEVWNDPVVQGVWEKQAEYQIVESVKFFFDALDRISAADYTATPQDMVYTRVRTTGIVTDRYVIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVLFVASISEYDQSLFEDANTNRVNEALTLFADTCNNKYFQSSSIILLLNKRDLYEAKVKKVAINSVPAFKDYSGPAKDVDAGIKYFMDKFLAQKGSFKKDIYVHVV 324          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 5.420e-82
Identity = 124/218 (56.88%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   34 LIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDR-GVSYFLEK--ASGERGKRRVYYEAV 678
            L+   ED A ID ++GQAI  +W DP + + WE+R+EYQ++ES+KYF + M RI Q  +VAT QD+L+ R+R+SGIV ++Y IDG+TFEMYDVGGQRNERKKWIHCFDNVTAVI+VAALSEY+Q +FEDA+TNRMTEA++LF  IC+N +F+ SS+ILFLNKKDLFAEK+    I   ++W+DF G    +  G +YFL       +  +R VY+   
Sbjct:  107 LVVDCEDSAAIDMELGQAIQDVWSDPAMLRVWERRAEYQIVESVKYFFNEMERIKQDDFVATQQDVLYSRVRTSGIVTERYEIDGSTFEMYDVGGQRNERKKWIHCFDNVTAVIFVAALSEYDQCLFEDASTNRMTEAMDLFNEICNNRFFSESSMILFLNKKDLFAEKIQRVDIKSVEKWADFTGEPRDEEAGKAYFLSLFLKVNQNPEREVYHHVT 324          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE70_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.030e-79
Identity = 117/221 (52.94%), Postives = 165/221 (74.66%), Query Frame = 1
Query:   25 AMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGA-CTFDRGVSYFLEKASGERG--KRRVYYEAV 678
            A   +++ +D A ID ++G+A+ A+W DP++Q+ WEK++E+Q+ ES+KYF D M RI  P Y ATPQD+++ R+R++GIV D+Y IDGTTFEMYDVGGQRNERKKWIHCFD VTAV++VA+LSEY+Q +FEDA+TNR+TEA++LF   C+N YF +SSIILFLNK+DLF  K+    I     + DF G   + + G+ YF++K   ++G  ++ +Y   V
Sbjct:  105 AFDTVKTCDDTAVIDTELGKALKAVWQDPVVQRVWEKQAEFQIEESVKYFFDDMDRISGPGYTATPQDMVYTRVRTTGIVTDRYVIDGTTFEMYDVGGQRNERKKWIHCFDAVTAVLFVASLSEYDQKLFEDASTNRVTEALSLFADTCNNKYFHNSSIILFLNKRDLFEAKVLKVSIKSIPSFIDFGGPEQSAEAGIKYFMDKFLAQKGAFRKDIYVHVV 325          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: Heterotrimeric (G protein alpha subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8C6_THAPS)

HSP 1 Score: 245 bits (626), Expect = 2.850e-77
Identity = 119/226 (52.65%), Postives = 164/226 (72.57%), Query Frame = 1
Query:    7 KVVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACT----FDRGVSYFLEK--ASGERGKRRVY 666
            +V+ +D    + S++DQ  I+E++G  I ALW DP +  TW++R+E+Q++ES+KY+ + + RIMQ  YVAT QD+L  R+R+SGIV +KY IDG  FEMYDVGGQRNERKKWIHCFD+VTAVI+VAALSEY+Q +FEDA+TNRM EAV+LF  IC+N +F +S++ILFLNKKDL+ EK+    I     ++ F G       +D+G+ YFL+         +R+VY
Sbjct:   99 EVIAKDKFDFMLSVDDQCEINEEIGLTIKALWTDPGVLMTWKRRAEFQIVESVKYYFNEIERIMQDDYVATQQDMLLARVRTSGIVTEKYVIDGVDFEMYDVGGQRNERKKWIHCFDDVTAVIFVAALSEYDQALFEDASTNRMVEAVDLFGEICNNKFFDTSAMILFLNKKDLYEEKIKNVHIGDQPAFAAFGGNIGDEDYYDKGIQYFLDMFLEQNTNPERQVY 324          
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Match: GPA1, (alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY4_9STRA)

HSP 1 Score: 241 bits (616), Expect = 8.410e-76
Identity = 114/206 (55.34%), Postives = 153/206 (74.27%), Query Frame = 1
Query:   10 VVDQDAMGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFLDGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRNERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSNSYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGAC-TFDRGVSYF 624
            VV Q+A   +++ ++ A ID  +G A+ ALW DP I   WE+RSE+Q++ES+K++   + RIMQP Y+ + QD+L+ R+R+SGIV ++Y ID TTFEMYDVGGQRNERKKWIHCFD+VTAVI+V+ALSEY+Q +FEDA TNRM EA+ LF  IC+N YF  SS+ILFLNKKDL+ +K+    I     +SDF G     ++G+ YF
Sbjct:   99 VVAQEAFHTVKATDEAAVIDVALGTALKALWVDPGILGVWERRSEFQIVESVKFYFGELDRIMQPDYLPSQQDVLYARVRTSGIVTERYEIDSTTFEMYDVGGQRNERKKWIHCFDDVTAVIFVSALSEYDQSLFEDATTNRMVEAIELFGEICNNRYFQDSSMILFLNKKDLYEDKIKKVDIKSIDAFSDFPGGLGDAEKGIEYF 304          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11237.1063.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GPA2,3.730e-14691.52alpha subunit of a heterotrimeric G protein n=1 Ta... [more]
Uncharacterized6.040e-14695.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
G-protein2.130e-8455.51complex alpha subunit n=1 Tax=Nannochloropsis gadi... [more]
Hypothetical3.560e-8359.31protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
GPA1,1.910e-8254.63alpha subunit of a heterotrimeric G protein n=1 Ta... [more]
GPA1,2.700e-8253.15alpha subunit of a heterotrimeric G protein n=1 Ta... [more]
GPA1,5.420e-8256.88alpha subunit of a heterotrimeric G protein n=2 Ta... [more]
GPA1,1.030e-7952.94alpha subunit of a heterotrimeric G protein n=1 Ta... [more]
Heterotrimeric2.850e-7752.65G protein alpha subunit 1 n=1 Tax=Thalassiosira ps... [more]
GPA1,8.410e-7655.34alpha subunit of a heterotrimeric G protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11237contigEcto-sp9_F_contig11237:324..3950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score408.7
Seed ortholog evalue1.7e-111
Seed eggNOG ortholog2880.D8LKL8
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size678
Cds size651
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11237.1063.1prot_Ecto-sp9_F_contig11237.1063.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11237 324..3923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928366.4409945-CDS-Ecto-sp9_F_contig11237:323..4551622928366.4409945-CDS-Ecto-sp9_F_contig11237:323..455Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 324..455 -
1692277848.1623552-CDS-Ecto-sp9_F_contig11237:323..4551692277848.1623552-CDS-Ecto-sp9_F_contig11237:323..455Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 324..455 -
1622928366.4542491-CDS-Ecto-sp9_F_contig11237:833..9451622928366.4542491-CDS-Ecto-sp9_F_contig11237:833..945Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 834..945 -
1692277848.1785078-CDS-Ecto-sp9_F_contig11237:833..9451692277848.1785078-CDS-Ecto-sp9_F_contig11237:833..945Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 834..945 -
1622928366.4685826-CDS-Ecto-sp9_F_contig11237:1846..20241622928366.4685826-CDS-Ecto-sp9_F_contig11237:1846..2024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 1847..2024 -
1692277848.188228-CDS-Ecto-sp9_F_contig11237:1846..20241692277848.188228-CDS-Ecto-sp9_F_contig11237:1846..2024Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 1847..2024 -
1622928366.4823918-CDS-Ecto-sp9_F_contig11237:2902..30521622928366.4823918-CDS-Ecto-sp9_F_contig11237:2902..3052Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 2903..3052 -
1692277848.1980174-CDS-Ecto-sp9_F_contig11237:2902..30521692277848.1980174-CDS-Ecto-sp9_F_contig11237:2902..3052Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 2903..3052 -
1622928366.4927194-CDS-Ecto-sp9_F_contig11237:3844..39231622928366.4927194-CDS-Ecto-sp9_F_contig11237:3844..3923Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 3845..3923 -
1692277848.2075074-CDS-Ecto-sp9_F_contig11237:3844..39231692277848.2075074-CDS-Ecto-sp9_F_contig11237:3844..3923Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11237 3845..3923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928366.5055516-UTR-Ecto-sp9_F_contig11237:3923..39501622928366.5055516-UTR-Ecto-sp9_F_contig11237:3923..3950Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11237 3924..3950 -
1692277848.2238317-UTR-Ecto-sp9_F_contig11237:3923..39501692277848.2238317-UTR-Ecto-sp9_F_contig11237:3923..3950Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11237 3924..3950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11237.1063.1

>prot_Ecto-sp9_F_contig11237.1063.1 ID=prot_Ecto-sp9_F_contig11237.1063.1|Name=mRNA_Ecto-sp9_F_contig11237.1063.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=217bp
MGLIRSLEDQAPIDEKVGQAITALWGDPMIQKTWEKRSEYQVIESMKYFL
DGMSRIMQPQYVATPQDILHIRIRSSGIVVDKYCIDGTTFEMYDVGGQRN
ERKKWIHCFDNVTAVIYVAALSEYNQGMFEDANTNRMTEAVNLFQGICSN
SYFASSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFL
EKASGERGKRRVYYEAV
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mRNA from alignment at Ecto-sp9_F_contig11237:324..3950-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11237.1063.1 ID=mRNA_Ecto-sp9_F_contig11237.1063.1|Name=mRNA_Ecto-sp9_F_contig11237.1063.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3627bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11237:324..3950- (Ectocarpus species9 EcSCA_722f female)
CAACCAAAGGTGGTTGACCAGGATGCGATGGGGTTGATACGAAGTTTGGA GGATCAGGCGCCCATCGACGAGAAAGTTGGGCAAGCCATCACGGCCTTGT GGGGGGGTGAGTGGGAGATGGGCTCTTGAACCAGAGTCGTGCTTGTGTGA AGTATTTTTTGTCTGTGTCCTCGTGTTTATTACATGGTTGGGCATTGAAC GGGGTGATGGATGAACATACCATCGAAGTCTCGCCGGGTTCCAACCGAAC GTCCTTCGCACGGGCGGGAAATTCGAAATTTGGAAGAATGGGGGGCACGC AGAATGTCAAAGTAGGGTCTCTTAGATGCAAACGAAAAGCATAGCTTCAC GCCCTTGCTCAGAACCTCAACAAGCCACTGATGCGGTCCTCTGTGGCTGT CATCGACCGCGTCTACCGGCTCACCGATGCCAGGAAGCCAAACCGTCGCC AGCAAACACAAAAAACGAATGAAACCTTGTTCCAGTCTGCTGGGCCTCCC GACATGGATGTGACGTAGTATGTGTTTGCTTGTGTGTGCTATTTGACTTG ATTTATAAATAGAGCGACCGGTTGGGTGTGAAAATATGCCCGTCTGGGTG GATTTGAGGCCTAGGTGCATGCGTGCGTGCGTGCGTGCGTGCGTGCGTGC GTGTGTGTTGTCAGCCTTGCCTTTGCATCGACTCCTGTGCCAGCCGACTA CCCGACAGTATAGCCGCTCGCGAGGATACTAAGCTTGGTCCAAGTAGGGG TCACGGAGCAGGGTTGGGGGTACGAACCCCTCTCTATATCATAGACTAAC ATTAATGTCCTCGCGAAAGGCGGCCCTTGCTGTTGCCGACGAAAGGGGTC CGTGTGTCCGTCCGCGTGTGTGCTTCGTTGGACGGTTTCTTCCATCAGAT CCTATGATCCAAAAGACGTGGGAGAAGCGCAGCGAGTACCAGGTGATCGA GAGCATGAAGTACTTCCTGGACGGTATGTCTAGGATTATGCAGCCTCAGT ACGTGGCCACGCCACAGGACATCCTGCACATTCGGATACGCAGCTCAGGT GAGCGTCTAGGGGGGAATGAGGATTGTTTCCGGTTCTGCAGGTAACATAT GCTACATGTAGCATAGACTAAGACTATATATCTTTACGTATACTTGTAGA CAAAAAAATAACCTTAAATGGTCCCGGTTCACCTCAGCGTGTATTGATAT CAAGTTACTGTTGCTTTCAGTGTATCGTGATGAGTTAGTTTTCTCTGTCG TTTGCACTTGTTTTTGGATGGATGCATTCGCCAATGAAAAGTAACAGGTG AGAGAAACGGACGGCAGCGTGGTCTGGTTCTTCGTTCGAGCTGGGTGTTT TGTCTGTGTAGTCTACACTTTACGGCGATGCCACCGTATTCAGGCCGGGC GTGGTTTTGTTTTGTTTTGTTGATGTTATCGTACTCGTGGTTGTCTACCT CTGCGTGATTGCCGCCATAACTCTGTGGTACTTGGAAGTACGTGTTAGGT TGCTCATTTTCGGTCCTTCGGCGTTGTTGTTGGCTTCTTTTTTTTTTTCT TTCAGTGCCGTCTTTTGGTCGATGTGATGGTTCGTTCGTTGTGTCTCTCG CTAGGATTGCTTATTGCTGTATGTGTTGTGACATTATCGACCTTTTGGGG GGTTCGACGGCCTCACAACGGTGTCGATCGTGATGTCTGGCATGATTAGT TGTGATTGCTTCGCGAGGTATTTTCTTCAAAAGCAGGGCTGCATCCTTGA ATGTGTTGGCCGTACAACTTTTATTGGAAGTGTGACAGCTCCATGGTGTT GATGTTTCGAGCCTCACCATATCTCTGTGCAGTATTTGTTGGCGTTATGG TGTAAACGATACGTATGTTACGGTAGGGGCCTGACCATTGTCAGTGTATC GTTCTGTTTGTTTTTTTTTTCCTCAGGGATCGTGGTAGACAAGTACTGCA TCGACGGGACGACCTTCGAGATGTACGACGTGGGGGGGCAGCGCAACGAG CGCAAGAAGTGGATCCACTGCTTCGACAACGTGACCGCCGTCATCTACGT CGCCGCCCTGTCGGAGTACAACCAGGGCATGTTTGAGGACGCGAACACCA ACCGGTACGGTTCCTGGTTGCTTGTAAAAACGGTCGTTGTCGTTGTTGTG GACGGTTTTTGTCCGCTTGAATGGTCGTTGTCGTCGTTGGTGTTGTCGCT GTCGTGGTGGTGGTTCTGTTCTGTTGTATTGTGGTTGTCGTTGTCGTTGT TGTGGTACGGTTTCTGGCCGCTTGAATGGTCGTTGTCGTCCTTGGTGTTG TCGTTGTCGTTGTCGTGCTGGTGGTTTTGTTGTATGGTGGTTGTCGTTGT CGTTGTTGTGCTGGTGGTTTTGTTGTATGGTGGTTGTCGTTGTCGTTAGT GTGGTTTGCTGTATCGTCGTTGTAGTTGGTTTGTGGTTTGGTCGCATTAC ACGTGGTTGTTGCGGCTGTCGCCCTCTGTCACCCACCTACATACCCTGCT TGCCCTGGCCGGTTGTAGTTCATGTATCAGGCCGCTCTTTTTTCTTGGCC GTATGTCAACCGCCTTTTCGCGTTTTGAGTTCCTCACGTTGTATTCCCGT CTGCCCGTAGGTGCCTTGCTCACACTACTTTTGCCGCCCGCTGTCATGCA TGCGTGCCCTGGCGACGAATGCCACTCGTGCATGCCTGCGATGATGCCTA GGCCCGACCTCGTTGTCCGCAGCCTTTTTCGCTCCAAACATGCACACGGC ACGCAGCCAGCCCCTACACAGACGAACACGCGCGCAGCCCTACATCCTCG CAAGTAGCATACCACTTTCTGCTGCCTGTTGTGGAAGTATTTGGAGGTGG TGTTGGTGGTGTGGTTATTGTTGGGGCTTTTCCCCGTCCTGTTGTGGCAA GGCCTTTGCCCTCCCACTGCCATACCCGCTGACCTGCCTGCTTGCCTGTC TGCTTGCTTGCTTCCTGTCTGCCCTGTGGCCACGCCGCCTGGTTGGGGTT GTCAGCATGACGGAGGCGGTGAACCTCTTCCAGGGCATCTGCAGCAATTC CTACTTCGCGAGCTCCAGCATCATCCTCTTCCTCAACAAGAAAGACCTCT TCGCAGAAAAGTTGGCGGTGAGTGTGAGGAGGCGAGCGCTTTGCTGGTGT TTTGTGTTTGGTAGCGTCACGATTTCGCCTGACGACCCTTGCCCCATGCG CCCTCACCCCGTTTCACCTTTCGCTGCAATCCTCGCTCCGCCTTCGTCGT TTCGAGGTATTGTGTGACGCACGTCGCGGCGTCGCGGTGTGCATGGCGAT GCTGCGGATTGTTGTCCGCCACGAGATCGAAATAAACCAACCCCGGCGTA ATATCGCCTGTAGAACCGAGGTTGCGTTTTCTTTTTTGCCACGAGGAATA ATCAATGCCGACAACCCAGTCAGCGTTTTCTTGTGTGCCACGAGATCGAA ATATTCACCCCCAACGTAACCATGCCTCCTGAAACCGAACCGCAGACGAA CCCCATCAACCATACCAAGGAGTGGTCGGACTTTAAGGGCGCCTGCACAT TCGACAGAGGGGTTTCCTACTTCTTGGAGAAGGCGAGTGGGGAGCGGGGG AAACGGCGGGTGTATTACGAAGCGGTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11237:324..3950-

>mRNA_Ecto-sp9_F_contig11237.1063.1 ID=mRNA_Ecto-sp9_F_contig11237.1063.1|Name=mRNA_Ecto-sp9_F_contig11237.1063.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11237:324..3950- (Ectocarpus species9 EcSCA_722f female)
ATGGGGTTGATACGAAGTTTGGAGGATCAGGCGCCCATCGACGAGAAAGT
TGGGCAAGCCATCACGGCCTTGTGGGGGGATGGGGTTGATACGAAGTTTG
GAGGATCAGGCGCCCATCGACGAGAAAGTTGGGCAAGCCATCACGGCCTT
GTGGGGGGATCCTATGATCCAAAAGACGTGGGAGAAGCGCAGCGAGTACC
AGGTGATCGAGAGCATGAAGTACTTCCTGGACGGTATGTCTAGGATTATG
CAGCCTCAGTACGTGGCCACGCCACAGGACATCCTGCACATTCGGATACG
CAGCTCAGATCCTATGATCCAAAAGACGTGGGAGAAGCGCAGCGAGTACC
AGGTGATCGAGAGCATGAAGTACTTCCTGGACGGTATGTCTAGGATTATG
CAGCCTCAGTACGTGGCCACGCCACAGGACATCCTGCACATTCGGATACG
CAGCTCAGGGATCGTGGTAGACAAGTACTGCATCGACGGGACGACCTTCG
AGATGTACGACGTGGGGGGGCAGCGCAACGAGCGCAAGAAGTGGATCCAC
TGCTTCGACAACGTGACCGCCGTCATCTACGTCGCCGCCCTGTCGGAGTA
CAACCAGGGCATGTTTGAGGACGCGAACACCAACCGGGATCGTGGTAGAC
AAGTACTGCATCGACGGGACGACCTTCGAGATGTACGACGTGGGGGGGCA
GCGCAACGAGCGCAAGAAGTGGATCCACTGCTTCGACAACGTGACCGCCG
TCATCTACGTCGCCGCCCTGTCGGAGTACAACCAGGGCATGTTTGAGGAC
GCGAACACCAACCGCATGACGGAGGCGGTGAACCTCTTCCAGGGCATCTG
CAGCAATTCCTACTTCGCGAGCTCCAGCATCATCCTCTTCCTCAACAAGA
AAGACCTCTTCGCAGAAAAGTTGGCGCATGACGGAGGCGGTGAACCTCTT
CCAGGGCATCTGCAGCAATTCCTACTTCGCGAGCTCCAGCATCATCCTCT
TCCTCAACAAGAAAGACCTCTTCGCAGAAAAGTTGGCGACGAACCCCATC
AACCATACCAAGGAGTGGTCGGACTTTAAGGGCGCCTGCACATTCGACAG
AGGGGTTTCCTACTTCTTGGAGAAGGCGAGTGGGGAGCGGGGGAAACGGC
GGGTGTATTACGAAGCGGTTACGAACCCCATCAACCATACCAAGGAGTGG
TCGGACTTTAAGGGCGCCTGCACATTCGACAGAGGGGTTTCCTACTTCTT
GGAGAAGGCGAGTGGGGAGCGGGGGAAACGGCGGGTGTATTACGAAGCGG
TT
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