mRNA_Ecto-sp9_F_contig11214.1049.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11214.1049.1
Unique NamemRNA_Ecto-sp9_F_contig11214.1049.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: Similar (to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 6.620e-47
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 YDWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSSKPGTIGM 261
            YDWVRFSDEEEDEDARLCNMAMLCGP GVGKTSAVYGCA ALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSSKPGT G+
Sbjct:  858 YDWVRFSDEEEDEDARLCNMAMLCGPPGVGKTSAVYGCAKALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSSKPGTDGV 944
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain-containing protein 5-like n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2P5U0_FUNHE)

HSP 1 Score: 79.7 bits (195), Expect = 1.890e-15
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            +W R  D+ +D D  LCN  ++ GP+GVGKT+AVY CA  LG++V EVN S  RSG  I     EATQSH V S   ++ KP     Y
Sbjct: 1052 EWDRGEDDYQDADDALCNTVLITGPTGVGKTAAVYACAQELGFKVFEVNASSQRSGRLILSQLKEATQSHQVDSQGVNAHKPAYFTSY 1139
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain containing 5 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9D658_RABIT)

HSP 1 Score: 79.7 bits (195), Expect = 1.890e-15
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F    EDE++RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1041 DSLDFQGSSEDEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSY 1128
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain containing 5 n=5 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1TW68_RABIT)

HSP 1 Score: 79.7 bits (195), Expect = 1.890e-15
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F    EDE++RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1106 DSLDFQGSSEDEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSY 1193
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain containing 5 n=1 Tax=Loxodonta africana TaxID=9785 RepID=G3TGV4_LOXAF)

HSP 1 Score: 79.7 bits (195), Expect = 1.890e-15
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F +  +DE++RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1113 DNIDFKESSDDEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNNY 1200
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain containing 5 n=2 Tax=Loxodonta africana TaxID=9785 RepID=G3TZQ6_LOXAF)

HSP 1 Score: 79.7 bits (195), Expect = 1.900e-15
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F +  +DE++RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1121 DNIDFKESSDDEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNNY 1208
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain-containing protein 5 n=1 Tax=Trichechus manatus latirostris TaxID=127582 RepID=A0A2Y9E1K5_TRIMA)

HSP 1 Score: 79.7 bits (195), Expect = 1.900e-15
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F +  +DE+ RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1118 DSIDFKESSDDEETRLCNTVLITGPTGVGKTAAVYACAHELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFSSY 1205
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain-containing protein 5 isoform X1 n=5 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189D2CD3)

HSP 1 Score: 79.3 bits (194), Expect = 2.590e-15
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F    +DE++RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1165 DSIDFKGSSDDEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSY 1252
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BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: LOW (QUALITY PROTEIN: ATPase family AAA domain-containing protein 5 n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101A9A39)

HSP 1 Score: 79.3 bits (194), Expect = 2.590e-15
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F D  ++E+ RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct: 1165 DRIDFKDSSDEEENRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSY 1252
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Match: ATPase (family AAA domain-containing protein 5 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=L9KGH4_TUPCH)

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-15
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:    4 DWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVNPSQLRSGAAIRRLFGEATQSHHVSSAETSS-KPGTIGMY 264
            D + F    +DE+ RLCN  ++ GP+GVGKT+AVY CA  LG+++ EVN S  RSG  I     EATQSH V     +S KP     Y
Sbjct:  683 DSIDFKGSSDDEEGRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSY 770
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11214.1049.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar6.620e-4795.40to chromosome fragility associated gene 1 n=1 Tax=... [more]
ATPase1.890e-1547.73family AAA domain-containing protein 5-like n=3 Ta... [more]
ATPase1.890e-1547.73family AAA domain containing 5 n=1 Tax=Oryctolagus... [more]
ATPase1.890e-1547.73family AAA domain containing 5 n=5 Tax=Oryctolagus... [more]
ATPase1.890e-1546.59family AAA domain containing 5 n=1 Tax=Loxodonta a... [more]
ATPase1.900e-1546.59family AAA domain containing 5 n=2 Tax=Loxodonta a... [more]
ATPase1.900e-1546.59family AAA domain-containing protein 5 n=1 Tax=Tri... [more]
ATPase2.590e-1546.59family AAA domain-containing protein 5 isoform X1 ... [more]
LOW2.590e-1546.59QUALITY PROTEIN: ATPase family AAA domain-containi... [more]
ATPase3.500e-1546.59family AAA domain-containing protein 5 n=1 Tax=Tup... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11214contigEcto-sp9_F_contig11214:2741..3359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928363.5385218-CDS-Ecto-sp9_F_contig11214:2740..28501622928363.5385218-CDS-Ecto-sp9_F_contig11214:2740..2850Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11214 2741..2850 +
1692277847.3150196-CDS-Ecto-sp9_F_contig11214:2740..28501692277847.3150196-CDS-Ecto-sp9_F_contig11214:2740..2850Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11214 2741..2850 +
1622928363.5503738-CDS-Ecto-sp9_F_contig11214:3202..33591622928363.5503738-CDS-Ecto-sp9_F_contig11214:3202..3359Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11214 3203..3359 +
1692277847.327518-CDS-Ecto-sp9_F_contig11214:3202..33591692277847.327518-CDS-Ecto-sp9_F_contig11214:3202..3359Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11214 3203..3359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11214.1049.1prot_Ecto-sp9_F_contig11214.1049.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11214 2741..3359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11214.1049.1

>prot_Ecto-sp9_F_contig11214.1049.1 ID=prot_Ecto-sp9_F_contig11214.1049.1|Name=mRNA_Ecto-sp9_F_contig11214.1049.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=89bp
YDWVRFSDEEEDEDARLCNMAMLCGPSGVGKTSAVYGCATALGYEVIEVN
PSQLRSGAAIRRLFGEATQSHHVSSAETSSKPGTIGMY*
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mRNA from alignment at Ecto-sp9_F_contig11214:2741..3359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11214.1049.1 ID=mRNA_Ecto-sp9_F_contig11214.1049.1|Name=mRNA_Ecto-sp9_F_contig11214.1049.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=619bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11214:2741..3359+ (Ectocarpus species9 EcSCA_722f female)
TACGACTGGGTGCGATTCTCAGACGAGGAAGAGGACGAGGACGCTAGGCT
GTGCAACATGGCCATGCTCTGTGGCCCGTCGGGAGTGGGCAAGACAAGCG
CTGTATACGGGTGAGAGGAGAGAGAGAGGTAGAGGGGGAGATGTAGAGAG
AAAAAGAAAGAGAGAAAAGAGGGAGACAGAGAGAGGAACAGACAAGTAGA
GACAGAGACAGAGAGAGACAGAGAGAAAGAGAAGGATTGGACACGCCACG
ATTGCTTTGTTTATTCAAGTCATGAAGCCGTCATCCACATGCAAGGATGA
GGCTCTCTGTGTTTGTATTTATTTTTCTAATATATGTCGATGGCGTTTCT
GTGAGTTTCCGTCGACCCTTGGGTGATTGGTCGTGACTGCTGTCGATGAC
GACGTACCACGCCAATAAGCAACGTGTTCGTCATTCCCTGCGTTTTTGTC
AATTCAATGCAGGTGCGCTACGGCGTTAGGGTACGAGGTTATCGAGGTGA
ACCCTTCCCAGCTGCGGTCGGGAGCTGCCATCCGCAGGCTGTTCGGCGAA
GCGACGCAGTCACACCACGTCTCCTCCGCCGAAACCAGCTCCAAGCCAGG
TACCATTGGTATGTATTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11214:2741..3359+

>mRNA_Ecto-sp9_F_contig11214.1049.1 ID=mRNA_Ecto-sp9_F_contig11214.1049.1|Name=mRNA_Ecto-sp9_F_contig11214.1049.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11214:2741..3359+ (Ectocarpus species9 EcSCA_722f female)
TACGACTGGGTGCGATTCTCAGACGAGGAAGAGGACGAGGACGCTAGGCT
GTGCAACATGGCCATGCTCTGTGGCCCGTCGGGAGTGGGCAAGACAAGCG
CTGTATACGGTACGACTGGGTGCGATTCTCAGACGAGGAAGAGGACGAGG
ACGCTAGGCTGTGCAACATGGCCATGCTCTGTGGCCCGTCGGGAGTGGGC
AAGACAAGCGCTGTATACGGGTGCGCTACGGCGTTAGGGTACGAGGTTAT
CGAGGTGAACCCTTCCCAGCTGCGGTCGGGAGCTGCCATCCGCAGGCTGT
TCGGCGAAGCGACGCAGTCACACCACGTCTCCTCCGCCGAAACCAGCTCC
AAGCCAGGTACCATTGGTATGTATTAAGTGCGCTACGGCGTTAGGGTACG
AGGTTATCGAGGTGAACCCTTCCCAGCTGCGGTCGGGAGCTGCCATCCGC
AGGCTGTTCGGCGAAGCGACGCAGTCACACCACGTCTCCTCCGCCGAAAC
CAGCTCCAAGCCAGGTACCATTGGTATGTATTAA
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