mRNA_Ecto-sp9_F_contig11210.1046.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11210.1046.1
Unique NamemRNA_Ecto-sp9_F_contig11210.1046.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11210.1046.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11210contigEcto-sp9_F_contig11210:559..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size331
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928363.393536-CDS-Ecto-sp9_F_contig11210:558..8881622928363.393536-CDS-Ecto-sp9_F_contig11210:558..888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11210 559..888 +
1692277847.2424405-CDS-Ecto-sp9_F_contig11210:558..8881692277847.2424405-CDS-Ecto-sp9_F_contig11210:558..888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11210 559..888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11210.1046.1prot_Ecto-sp9_F_contig11210.1046.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11210 559..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11210.1046.1

>prot_Ecto-sp9_F_contig11210.1046.1 ID=prot_Ecto-sp9_F_contig11210.1046.1|Name=mRNA_Ecto-sp9_F_contig11210.1046.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=110bp
HPAPHISLFLRLCRIQRRRCVPRHVQKMMIPQPTMIDKGSNMHHRLHQRG
STHTHHSSHLLQNFRETMDVSLLIAPSRHNNHHQEHREGSFAVVDDSSTI
ADFFCRPTFK
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mRNA from alignment at Ecto-sp9_F_contig11210:559..889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11210.1046.1 ID=mRNA_Ecto-sp9_F_contig11210.1046.1|Name=mRNA_Ecto-sp9_F_contig11210.1046.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=331bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11210:559..889+ (Ectocarpus species9 EcSCA_722f female)
CACCCCGCGCCGCATATTTCTCTGTTTCTGCGCCTGTGTCGAATCCAGCG
GCGTCGCTGTGTTCCCCGCCACGTCCAAAAAATGATGATCCCGCAGCCGA
CGATGATAGATAAGGGATCCAACATGCATCATCGCCTTCATCAGCGAGGC
AGCACACACACACACCATTCGAGCCACCTCCTCCAAAATTTCCGTGAAAC
AATGGACGTGAGTCTCCTTATTGCCCCCAGCCGTCACAACAACCATCACC
AAGAACACAGGGAGGGATCTTTCGCCGTGGTTGACGATTCGTCCACAATC
GCCGACTTTTTTTGTCGTCCTACTTTTAAAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11210:559..889+

>mRNA_Ecto-sp9_F_contig11210.1046.1 ID=mRNA_Ecto-sp9_F_contig11210.1046.1|Name=mRNA_Ecto-sp9_F_contig11210.1046.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11210:559..889+ (Ectocarpus species9 EcSCA_722f female)
CACCCCGCGCCGCATATTTCTCTGTTTCTGCGCCTGTGTCGAATCCAGCG
GCGTCGCTGTGTTCCCCGCCACGTCCAAAAAATGATGATCCCGCAGCCGA
CGATGATAGATAAGGGATCCAACATGCATCATCGCCTTCATCAGCGAGGC
AGCACACACACACACCATTCGAGCCACCTCCTCCAAAATTTCCGTGAAAC
AATGGACGTGAGTCTCCTTATTGCCCCCAGCCGTCACAACAACCATCACC
AAGAACACAGGGAGGGATCTTTCGCCGTGGTTGACGATTCGTCCACAATC
GCCGACTTTTTTTGTCGTCCTACTTTTAAACACCCCGCGCCGCATATTTC
TCTGTTTCTGCGCCTGTGTCGAATCCAGCGGCGTCGCTGTGTTCCCCGCC
ACGTCCAAAAAATGATGATCCCGCAGCCGACGATGATAGATAAGGGATCC
AACATGCATCATCGCCTTCATCAGCGAGGCAGCACACACACACACCATTC
GAGCCACCTCCTCCAAAATTTCCGTGAAACAATGGACGTGAGTCTCCTTA
TTGCCCCCAGCCGTCACAACAACCATCACCAAGAACACAGGGAGGGATCT
TTCGCCGTGGTTGACGATTCGTCCACAATCGCCGACTTTTTTTGTCGTCC
TACTTTTAAA
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