mRNA_Ecto-sp9_F_contig1121.1045.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1121.1045.1
Unique NamemRNA_Ecto-sp9_F_contig1121.1045.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1121.1045.1 vs.
Match: BRCT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK71_9PHAE)

HSP 1 Score: 478 bits (1230), Expect = 9.690e-169
Identity = 250/271 (92.25%), Postives = 254/271 (93.73%), Query Frame = 1 
Query:   58 MDAFLLKKDPSAAARLGSSGKQPTKSQFLYNPNPRQFVFPAPNESNDGRSGKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMDNFFGSSSPASVSSPSSGCNDDEGRRNSSAQKENGKEGKSRQHRSVPRKSGAVVRAGGVEGRRGGRKRESRGRGKRQGEKEGSGSNSVHEVG 870
            MDAFLLKKDPSAAARLGS GKQ TK QFLYNPNPRQFVFPAPN SNDGRS KKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMD FFGSSS A VSSPS GCNDDEGRRN+ AQKENGKE K R HRSVPRKSGAVVRAGG+EGRRG R RESRGRG+RQG +EGSGS SVHEVG
Sbjct:    1 MDAFLLKKDPSAAARLGSGGKQQTKCQFLYNPNPRQFVFPAPNLSNDGRSDKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMDKFFGSSSSAPVSSPSPGCNDDEGRRNNRAQKENGKEAKPRHHRSVPRKSGAVVRAGGIEGRRGRRNRESRGRGRRQGAREGSGSESVHEVG 271
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BLAST of mRNA_Ecto-sp9_F_contig1121.1045.1 vs.
Match: BRCT (domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYX9_PLABS)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-13
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  304 EIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVH---PDWVNRCIAEGKLLPDAPFRVVRSQKLGMDNFF 606
            ++F G+  YFNGRSG+   + LK  V   GGR  P +S+K VTHV+ ENLSA+K+ K + S     VH   P+W+   I   K + +  +R V S+   + +FF
Sbjct:   61 QVFQGVCVYFNGRSGEFSALQLKSFVRLCGGRIAPMLSVKVVTHVVCENLSAIKSAKVVASGPKSRVHFVRPEWILDSIKGAKRVREHAYRAVSSRTTEITSFF 164
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BLAST of mRNA_Ecto-sp9_F_contig1121.1045.1 vs.
Match: BRCT (domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E384_MIXOS)

HSP 1 Score: 76.6 bits (187), Expect = 2.870e-12
Identity = 51/150 (34.00%), Postives = 80/150 (53.33%), Query Frame = 1 
Query:  199 GRSGKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSG-DKQTMHLKGAVSKHGGRTTPFMSMKGVTHVI-AENLSAVKTDKAMKSLKMK--VVHPDWVNRCIAEGKLLPDAPFRVV-RSQKLGMDNFFGSSSPASVS 633
            G   + GP  GGG   G+ + R  K+ +QA   +++IFA +S YFNG +G D     LK  + + GGR +     + +THV+ A  LS  K DK + + K    +V P+W+   +A G+ LP++ F V+ R  +  ++  F S  PA  S
Sbjct:  162 GHQMQNGP--GGGSVPGWNKARAIKIKQQADERINDIFARVSVYFNGYTGEDLSNQQLKRLLEQGGGRWSFAFGKRHITHVVTATGLSGSKADKELNARKSSTYIVRPEWIVDSVAAGRRLPESMFGVLERDSQAKINTVFESRGPAKTS 309
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BLAST of mRNA_Ecto-sp9_F_contig1121.1045.1 vs.
Match: Aste57867_22876 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.530e-6
Identity = 54/203 (26.60%), Postives = 94/203 (46.31%), Query Frame = 1 
Query:   43 PWFAEMDAFLLKKDPSAAARLG---------SSGKQPTKSQFLYNPNPRQFVFPAPNESNDGRSGKKGPPLGGGGASGYWQFRTSKLLE-----QAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLK-MKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMDNFF 606
            P+ A +    +   PS +  +G         SSG+  TK+    +P     V      +   RS KK  PL    +  + Q+ +SK+ +      +  G S++F G++ Y NG++   + + L+  V ++GG+   +++ + VTH+IA +LS  K  +     K + VVHP W+  CIA+ K +    F   R Q     + F
Sbjct:  251 PFSASLSTSDVNPPPSKSLTIGKTLDPRHEESSGRSTTKASDRKDP----LVL-----AESSRSRKKATPLFKQESVSFGQYMSSKISKLRGRNDSIRGSSKLFDGVAIYVNGQTQPSRDV-LRRLVLQYGGKFEQYLTDQ-VTHMIATHLSDTKFRELQSRKKPLPVVHPSWIEECIAQQKRVSTHTFIYSRYQDPLQPSLF 442
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1121.1045.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
BRCT9.690e-16992.25domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
BRCT1.360e-1339.42domain-containing protein n=1 Tax=Plasmodiophora b... [more]
BRCT2.870e-1234.00domain-containing protein n=1 Tax=Mixia osmundae (... [more]
Aste57867_228761.530e-626.60protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1121contigEcto-sp9_F_contig1121:21273..23681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score88.2
Seed ortholog evalue6.4e-15
Seed eggNOG ortholog109760.SPPG_07441T0
EggNOG free text desc.breast cancer carboxy-terminal domain
EggNOG OGs3A7UN@33154,3P5TJ@4751,COG0389@1,KOG2093@2759
COG Functional cat.L
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size870
Cds size813
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1121.1045.1prot_Ecto-sp9_F_contig1121.1045.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1121 21273..23624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928363.3057525-CDS-Ecto-sp9_F_contig1121:21272..216311622928363.3057525-CDS-Ecto-sp9_F_contig1121:21272..21631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 21273..21631 -
1692277847.1880648-CDS-Ecto-sp9_F_contig1121:21272..216311692277847.1880648-CDS-Ecto-sp9_F_contig1121:21272..21631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 21273..21631 -
1622928363.3185787-CDS-Ecto-sp9_F_contig1121:22124..221521622928363.3185787-CDS-Ecto-sp9_F_contig1121:22124..22152Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 22125..22152 -
1692277847.1975513-CDS-Ecto-sp9_F_contig1121:22124..221521692277847.1975513-CDS-Ecto-sp9_F_contig1121:22124..22152Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 22125..22152 -
1622928363.3282619-CDS-Ecto-sp9_F_contig1121:22406..225301622928363.3282619-CDS-Ecto-sp9_F_contig1121:22406..22530Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 22407..22530 -
1692277847.2048285-CDS-Ecto-sp9_F_contig1121:22406..225301692277847.2048285-CDS-Ecto-sp9_F_contig1121:22406..22530Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 22407..22530 -
1622928363.3370206-CDS-Ecto-sp9_F_contig1121:22815..229001622928363.3370206-CDS-Ecto-sp9_F_contig1121:22815..22900Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 22816..22900 -
1692277847.2122436-CDS-Ecto-sp9_F_contig1121:22815..229001692277847.2122436-CDS-Ecto-sp9_F_contig1121:22815..22900Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 22816..22900 -
1622928363.348186-CDS-Ecto-sp9_F_contig1121:23407..236241622928363.348186-CDS-Ecto-sp9_F_contig1121:23407..23624Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 23408..23624 -
1692277847.2215135-CDS-Ecto-sp9_F_contig1121:23407..236241692277847.2215135-CDS-Ecto-sp9_F_contig1121:23407..23624Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 23408..23624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928363.3582587-UTR-Ecto-sp9_F_contig1121:23624..236811622928363.3582587-UTR-Ecto-sp9_F_contig1121:23624..23681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1121 23625..23681 -
1692277847.2310364-UTR-Ecto-sp9_F_contig1121:23624..236811692277847.2310364-UTR-Ecto-sp9_F_contig1121:23624..23681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1121 23625..23681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1121.1045.1

>prot_Ecto-sp9_F_contig1121.1045.1 ID=prot_Ecto-sp9_F_contig1121.1045.1|Name=mRNA_Ecto-sp9_F_contig1121.1045.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=271bp
MDAFLLKKDPSAAARLGSSGKQPTKSQFLYNPNPRQFVFPAPNESNDGRS
GKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQ
TMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVH
PDWVNRCIAEGKLLPDAPFRVVRSQKLGMDNFFGSSSPASVSSPSSGCND
DEGRRNSSAQKENGKEGKSRQHRSVPRKSGAVVRAGGVEGRRGGRKRESR
GRGKRQGEKEGSGSNSVHEVG
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mRNA from alignment at Ecto-sp9_F_contig1121:21273..23681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1121.1045.1 ID=mRNA_Ecto-sp9_F_contig1121.1045.1|Name=mRNA_Ecto-sp9_F_contig1121.1045.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2409bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:21273..23681- (Ectocarpus species9 EcSCA_722f female)
TGACTGCTGTGCGGCTTGTGGCTGGCCTCTCCTCTCTCGTTCCCTTGGTT
CGCAGAGATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGC
GGTTGGGTTCTAGCGGAAAGCAACCAACCAAGAGCCAATTCTTGTACAAT
CCAAATCCTCGCCAATTCGTCTTCCCAGCTCCCAACGAGTCCAACGACGG
CCGCAGTGGCAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGT
ACTGGCAGTTCCGTACTTCCAAACGTGAGGCAGATGACAAGGTTTTCGTG
CCCGTTCGTTGTTGTTGCTCGTCTCTCTCTCTAGAATTTTGTTCCAACGG
CCGCATGTTGCTGTACATGTACCTCCTTTCCGCTGTTGGGGACAACGTAA
TGCGCGCGCGTCAGCTGTGGCATACGACTGTCACTGCTGTAGGACACTGC
TGTAACACCGCCTGTCTGTGTGATATTCTGTAGGGCGTCTGGTTTCGTGA
GTCGCCCCAGGATCTGAGATTTCATACTCCTCTTTCGTCGGTTTGGGTTT
GGGCGCATTTTGAGGCTGAACAGAACCACGGTACGAAGACTAGACTACTC
CTGTATTCGGACGCGTGCTCTGTTGATGAGGTGTTCGATTCCCAAGCGCT
CTTCCCCGAAATTTCTGTCATGTGAGATCAAGTTTACGATTAAGGTTGTC
ATGTCAAAGAAATATATTGCTAGAAGTACCAGGCTGATCGTGCAGACGAC
GCTTTTCGATATCTACCACCAACCACCGCAGTTTTGGAGCAAGCACCTGC
GGGCGTGTCGGAGATTTTCGCGGGCCTGAGCTTCTACTTTAATGGACGCA
GTGGGGACAAACAAACGTGAGACAGGGAGGGGTGGGTGGTTGTCATCTTG
TTTCAATCGGATTCTGGCCGCATAAACTTGGAGTTGCAGGTATCTCCATA
GTTACTGAAGCTGGCCATGAGGCTCGTGGTTGGTATTTCGTTGAATGTTT
CCTTGTCGCTGTCCCCGCCGCCCGATCTCACCCGCCTTATCACCCTTTCC
CGTCTGGCTCTGCCCTTCATCGGCACGTCTTGGATGTTGTGTGTGTTTCG
ATAAACACTGATACCGTGTTGCTGCTACTACTGCTGTTTGCGTCTCTGCA
GGATGCACCTAAAGGGTGCAGTGAGCAAACACGGCGGCCGCACCACGCCG
TTCATGTCGATGAAGGGAGTCACGCACGTTATCGCAGAGAACCTGAGCGC
GGTCAAGACCGACAAGGCCATGAAAGTAACCATGACCTTGCCCGTATCAT
ACGGAACTCTCTCCGCGAATTGGCTGCGCTTGTGGAGTGGTTGGAACCTG
CTGTCTACAATATTGTTAACGAAGTTTGTGCCGCGAGTGTGATACGTTTC
CCTCAGATTTATGATTACGGTTTTGACAACACCCCCGTCCCTCTGGCGTG
TGGCGTCTTTTTTTGCTGAACCATGGGAACAATCACTTCCAATTGGACCC
ACGTACTTGACCTTGTCTACGGGGATCAGTCGCTCAAGATGAAGGTGGTA
CACCCAGGTGAGGCCGGTTGCAACCAACGCATGATTGCACCGTACATCGT
CAAAATGAAATGCTTTGCCTGATGTCTGTGCTGGCGATGAGCGGTACAGG
AGCCAGAAGTACATAAGTCTCTATCATGTAGAGGGGATGTCAGGGTTTAG
TTTGTAGATCCACAATGGCGTGCAGCCTTGTGGTATTTCATCTATTGCTA
TCAGACACACGTGTGACATGTCCGGACGCTCTGGTGCTTTGTCTTTCCCT
GCCACACAGCAAGCCTCACGTGCACATGTTTCACTTGTTTGTCATACTCA
CATACTCCCACGTCCTCTCTTTGCCTTGACTGCAGGGTCCTGCACAGAGG
TACACAACCAACGTAGATCCATGAAATCCATCATTGCACAGCCACCGATC
GTTTTGTTGAGCGTGAGCCGACCCCCACCTCCACCGCCCGCCGCCCGCCG
CTTCCTTCCTCGTTGACGACGATCACGACGACGCTGCTTGAAAAAAAAAG
ACTGGGTGAATCGTTGCATCGCCGAGGGCAAGCTGCTCCCCGACGCTCCC
TTTCGCGTGGTGCGCAGCCAGAAGCTAGGCATGGACAACTTCTTCGGCTC
GTCCTCGCCCGCGTCTGTCTCTTCCCCCTCTTCCGGCTGCAATGACGACG
AAGGCCGGCGAAATAGTAGTGCCCAGAAAGAGAACGGGAAGGAGGGCAAG
TCAAGGCAGCACCGATCGGTCCCAAGAAAGTCTGGGGCGGTAGTGAGAGC
TGGTGGCGTTGAGGGGAGACGCGGGGGAAGAAAAAGGGAGAGTCGAGGGC
GGGGCAAGCGGCAAGGTGAAAAAGAGGGTAGCGGGAGCAATAGCGTCCAC
GAAGTCGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1121:21273..23681-

>mRNA_Ecto-sp9_F_contig1121.1045.1 ID=mRNA_Ecto-sp9_F_contig1121.1045.1|Name=mRNA_Ecto-sp9_F_contig1121.1045.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1626bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:21273..23681- (Ectocarpus species9 EcSCA_722f female)
ATGGATGCATTCCTGCTGAAGAAGGACCCATCGGCGGCAGCGCGGTTGGG
TTCTAGCGGAAAGCAACCAACCAAGAGCCAATTCTTGTACAATCCAAATC
CTCGCCAATTCGTCTTCCCAGCTCCCAACGAGTCCAACGACGGCCGCAGT
GGCAAGAAAGGGCCACCCCTTGGCGGCGGGGGAGCATCAGGGTACTGGCA
GTTCCGTACTTCCAAACATGGATGCATTCCTGCTGAAGAAGGACCCATCG
GCGGCAGCGCGGTTGGGTTCTAGCGGAAAGCAACCAACCAAGAGCCAATT
CTTGTACAATCCAAATCCTCGCCAATTCGTCTTCCCAGCTCCCAACGAGT
CCAACGACGGCCGCAGTGGCAAGAAAGGGCCACCCCTTGGCGGCGGGGGA
GCATCAGGGTACTGGCAGTTCCGTACTTCCAAACTTTTGGAGCAAGCACC
TGCGGGCGTGTCGGAGATTTTCGCGGGCCTGAGCTTCTACTTTAATGGAC
GCAGTGGGGACAAACAAACTTTTGGAGCAAGCACCTGCGGGCGTGTCGGA
GATTTTCGCGGGCCTGAGCTTCTACTTTAATGGACGCAGTGGGGACAAAC
AAACGATGCACCTAAAGGGTGCAGTGAGCAAACACGGCGGCCGCACCACG
CCGTTCATGTCGATGAAGGGAGTCACGCACGTTATCGCAGAGAACCTGAG
CGCGGTCAAGACCGACAAGGCCATGAAAGATGCACCTAAAGGGTGCAGTG
AGCAAACACGGCGGCCGCACCACGCCGTTCATGTCGATGAAGGGAGTCAC
GCACGTTATCGCAGAGAACCTGAGCGCGGTCAAGACCGACAAGGCCATGA
AATCGCTCAAGATGAAGGTGGTACACCCAGTCGCTCAAGATGAAGGTGGT
ACACCCAGACTGGGTGAATCGTTGCATCGCCGAGGGCAAGCTGCTCCCCG
ACGCTCCCTTTCGCGTGGTGCGCAGCCAGAAGCTAGGCATGGACAACTTC
TTCGGCTCGTCCTCGCCCGCGTCTGTCTCTTCCCCCTCTTCCGGCTGCAA
TGACGACGAAGGCCGGCGAAATAGTAGTGCCCAGAAAGAGAACGGGAAGG
AGGGCAAGTCAAGGCAGCACCGATCGGTCCCAAGAAAGTCTGGGGCGGTA
GTGAGAGCTGGTGGCGTTGAGGGGAGACGCGGGGGAAGAAAAAGGGAGAG
TCGAGGGCGGGGCAAGCGGCAAGGTGAAAAAGAGGGTAGCGGGAGCAATA
GCGTCCACGAAGTCGGCACTGGGTGAATCGTTGCATCGCCGAGGGCAAGC
TGCTCCCCGACGCTCCCTTTCGCGTGGTGCGCAGCCAGAAGCTAGGCATG
GACAACTTCTTCGGCTCGTCCTCGCCCGCGTCTGTCTCTTCCCCCTCTTC
CGGCTGCAATGACGACGAAGGCCGGCGAAATAGTAGTGCCCAGAAAGAGA
ACGGGAAGGAGGGCAAGTCAAGGCAGCACCGATCGGTCCCAAGAAAGTCT
GGGGCGGTAGTGAGAGCTGGTGGCGTTGAGGGGAGACGCGGGGGAAGAAA
AAGGGAGAGTCGAGGGCGGGGCAAGCGGCAAGGTGAAAAAGAGGGTAGCG
GGAGCAATAGCGTCCACGAAGTCGGC
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