mRNA_Ecto-sp9_F_contig1121.1042.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1121.1042.1
Unique NamemRNA_Ecto-sp9_F_contig1121.1042.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Sec7_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB1_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 4.520e-42
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 244
            DPLALVEMFVNYDCDLQAIDLFKRIATAL KVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG
Sbjct:  389 DPLALVEMFVNYDCDLQAIDLFKRIATALVKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 469          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: BIG2, (ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.970e-41
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 244
            DPLALVEMF+NYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG
Sbjct:  403 DPLALVEMFINYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 483          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: SEC7 (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUH3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.530e-8
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGR-----AG----SEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEE 235
            DP  L+E+F+NYDCDL A  +F RI  AL+KVA GR     AG    ++GAS   + L+++ +L+  G+ G VA+  S+VKA   ++
Sbjct:  493 DPRLLIEIFLNYDCDLGATSMFSRIVLALSKVAHGRGQQAVAGDGVLNQGAS---RRLQEEMALRSGGLEGLVAITKSLVKAGGFDD 576          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LNI7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-8
Identity = 28/76 (36.84%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADL 229
            DP  +  +F+NYDCD  AIDL+K I  +L K+++G+  +   + SKK+++Q++ L + G+   V ++ +M+K  DL
Sbjct:   89 DPHLITSIFLNYDCDFDAIDLYKNIVLSLTKLSQGKMRAR--TGSKKEIQQEQELAITGLEVLVVILRAMLKLLDL 162          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Guanine (nucleotide exchange factor in Golgi transport N-terminal-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.880e-8
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAK 103
            DP ALVE+F+NYDCDL AIDLFKRI  ++AKVAK
Sbjct:  105 DPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 138          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Aste57867_25067 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS78_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.260e-8
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGR--AGSEGASASKKDLE--QDRSLQLMGMGGAVAMVSSMVKAADLEE 235
            D   L E+F+NYDCD  ++DLFKRI  A++K+AKG+     +GASA+ K     QD +L L G+    A+V S+ K A+  +
Sbjct:  461 DGSILGEIFLNYDCDWNSMDLFKRIVDAISKIAKGKKDGAMQGASAAAKQASRTQDTALVLKGLECLTAVVGSLRKVANFTD 542          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: SEC7 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.300e-8
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2
Query:    5 PLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRA---GSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMV 214
            P AL E+F+NYDCD  AIDL+ RI  AL+KVAKGR    G   A+ S   L ++  L+  G+ G + +++SM+
Sbjct:  760 PPALAELFLNYDCDAGAIDLYARIVGALSKVAKGRGLGQGDHSATPSPALLREETHLRSAGLQGLINILTSML 832          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: BIG1, (ArfGEF protein of the BIG/GBF family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-7
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 2
Query:    5 PLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRS-LQLMGMGGAVAMVSSMVK------AADLEE 235
            P ALVE+F+ YDCDL AIDL+ RI  AL+K++KGR  S    ++   L ++ S L+  G+ G V+++ +M+       +AD+++
Sbjct:  518 PQALVEIFLTYDCDLHAIDLYNRIVNALSKISKGRGMSNSDVSNNPGLLREESYLRKKGLEGLVSILENMLSCVASDVSADMQD 601          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK43_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.590e-7
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKA 220
            D  ALVE+F+NYDC+ + +DLF+ I  +L +VAKGR   E +  SK+  +    LQ+ G+   VA+  S++++
Sbjct:  149 DAQALVEIFLNYDCNFEHVDLFRSIVLSLERVAKGRIPGE-SEGSKRPTDDHTRLQVKGLEALVAITHSLMRS 220          
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: SEC7 (domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SAJ1_ACAVI)

HSP 1 Score: 55.5 bits (132), Expect = 4.600e-7
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 2
Query:    2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSE-GASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAAD 226
            DP ++V+++VNYDCDL A ++F+RI   L KVA+G + S+ G+SA+    +++RS++++G+   V  +  MV   D
Sbjct:  438 DPQSMVDIYVNYDCDLTATNIFERIIDGLFKVAQGGSTSDYGSSAAVLQKQRERSMRILGLECLVECLQCMVDWFD 513          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Sec7_N4.520e-4298.77domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
BIG2,2.970e-4198.77ArfGEF protein of the BIG/GBF family n=1 Tax=Ectoc... [more]
SEC71.530e-842.53domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Hypothetical1.600e-836.84protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Guanine5.880e-876.47nucleotide exchange factor in Golgi transport N-te... [more]
Aste57867_250677.260e-842.68protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
SEC77.300e-845.21domain-containing protein n=1 Tax=Tribonema minus ... [more]
BIG1,1.360e-739.29ArfGEF protein of the BIG/GBF family n=2 Tax=Ectoc... [more]
Hypothetical4.590e-739.73protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
SEC74.600e-739.47domain-containing protein n=1 Tax=Acanthocheilonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1121contigEcto-sp9_F_contig1121:667..1400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue6e-32
Seed eggNOG ortholog2880.D8LFA1
KEGG koko:K18442
KEGG Pathwayko04144,map04144
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1121.1042.1prot_Ecto-sp9_F_contig1121.1042.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1121 667..1378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.8896863-CDS-Ecto-sp9_F_contig1121:666..8161622928362.8896863-CDS-Ecto-sp9_F_contig1121:666..816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 667..816 -
1692277846.9097285-CDS-Ecto-sp9_F_contig1121:666..8161692277846.9097285-CDS-Ecto-sp9_F_contig1121:666..816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 667..816 -
1622928362.899391-CDS-Ecto-sp9_F_contig1121:1306..13781622928362.899391-CDS-Ecto-sp9_F_contig1121:1306..1378Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 1307..1378 -
1692277846.9231703-CDS-Ecto-sp9_F_contig1121:1306..13781692277846.9231703-CDS-Ecto-sp9_F_contig1121:1306..1378Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1121 1307..1378 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.910661-UTR-Ecto-sp9_F_contig1121:1378..14001622928362.910661-UTR-Ecto-sp9_F_contig1121:1378..1400Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1121 1379..1400 -
1692277846.9307113-UTR-Ecto-sp9_F_contig1121:1378..14001692277846.9307113-UTR-Ecto-sp9_F_contig1121:1378..1400Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1121 1379..1400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1121.1042.1

>prot_Ecto-sp9_F_contig1121.1042.1 ID=prot_Ecto-sp9_F_contig1121.1042.1|Name=mRNA_Ecto-sp9_F_contig1121.1042.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=74bp
MFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQL
MGMGGAVAMVSSMVKAADLEELYG
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mRNA from alignment at Ecto-sp9_F_contig1121:667..1400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1121.1042.1 ID=mRNA_Ecto-sp9_F_contig1121.1042.1|Name=mRNA_Ecto-sp9_F_contig1121.1042.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:667..1400- (Ectocarpus species9 EcSCA_722f female)
GGACCCCCTCGCGCTGGTGGAAATGTTCGTCAACTACGACTGCGACCTCC AGGCCATCGACCTCTTCAAAAGGATCGCCACGGCTTTAGCCAAGGTGTGT GTGTGGGTGGGGGGGGCTATGAGACTACAGTTTTTGAGAGGTTGGGGGGG GGGGAGTCGTGACCGACAAGCCGGAGGCGTCGCCCCCCTTCTTGGCGGGG GCTATCTTTCTTCTAACTCCTCAACTAGTATAGCCAAGAAATTCCTTCTC GCGGTCTCAGGCGTCTTCTGTGCTACAGTCTGTCGGAAGATCGTTGTGTA AATGGGACGCAATAAAGGAATGCTGATCCGTTTCCATTGGGGGTTCCCCC CCCACCTCTCTCACGGAAGCTTCCCTCGGCGTTTTCCAGCACAGCTTGAA GGTGAATCGCAAAGGCCTACGACATAGTTTTGCAGTTCGAACCTCGTAGT GTTTATTTTTTGCGGCAACACCCTTTCGCATGGTTCGATTCGTTCCTAGC TTTCTCTACGTAAATATCTTCGTTGTGGCCCTCCCTCCCTCCCTCCCTCC GCCTGTCCACGAACAACGTTCGGGGGGCACGCAGGTAGCCAAAGGCCGAG CAGGGTCTGAGGGTGCCAGTGCCAGCAAGAAGGACTTGGAGCAGGACAGA TCGCTGCAGCTCATGGGGATGGGAGGGGCGGTGGCCATGGTGTCTTCCAT GGTGAAGGCGGCCGATCTGGAGGAGTTGTACGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1121:667..1400-

>mRNA_Ecto-sp9_F_contig1121.1042.1 ID=mRNA_Ecto-sp9_F_contig1121.1042.1|Name=mRNA_Ecto-sp9_F_contig1121.1042.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:667..1400- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGTCAACTACGACTGCGACCTCCAGGCCATCGACCTCTTCAAAAG
GATCGCCACGGCTTTAGCCAAGATGTTCGTCAACTACGACTGCGACCTCC
AGGCCATCGACCTCTTCAAAAGGATCGCCACGGCTTTAGCCAAGGTAGCC
AAAGGCCGAGCAGGGTCTGAGGGTGCCAGTGCCAGCAAGAAGGACTTGGA
GCAGGACAGATCGCTGCAGCTCATGGGGATGGGAGGGGCGGTGGCCATGG
TGTCTTCCATGGTGAAGGCGGCCGATCTGGAGGAGTTGTACGGGGTAGCC
AAAGGCCGAGCAGGGTCTGAGGGTGCCAGTGCCAGCAAGAAGGACTTGGA
GCAGGACAGATCGCTGCAGCTCATGGGGATGGGAGGGGCGGTGGCCATGG
TGTCTTCCATGGTGAAGGCGGCCGATCTGGAGGAGTTGTACGGG
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