mRNA_Ecto-sp9_F_contig1121.1042.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Sec7_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB1_9PHAE) HSP 1 Score: 151 bits (382), Expect = 4.520e-42 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 244
DPLALVEMFVNYDCDLQAIDLFKRIATAL KVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG
Sbjct: 389 DPLALVEMFVNYDCDLQAIDLFKRIATALVKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 469
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: BIG2, (ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI) HSP 1 Score: 152 bits (385), Expect = 2.970e-41 Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 244
DPLALVEMF+NYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG
Sbjct: 403 DPLALVEMFINYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 483
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: SEC7 (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUH3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.530e-8 Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGR-----AG----SEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEE 235
DP L+E+F+NYDCDL A +F RI AL+KVA GR AG ++GAS + L+++ +L+ G+ G VA+ S+VKA ++
Sbjct: 493 DPRLLIEIFLNYDCDLGATSMFSRIVLALSKVAHGRGQQAVAGDGVLNQGAS---RRLQEEMALRSGGLEGLVAITKSLVKAGGFDD 576
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LNI7_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.600e-8 Identity = 28/76 (36.84%), Postives = 50/76 (65.79%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADL 229
DP + +F+NYDCD AIDL+K I +L K+++G+ + + SKK+++Q++ L + G+ V ++ +M+K DL
Sbjct: 89 DPHLITSIFLNYDCDFDAIDLYKNIVLSLTKLSQGKMRAR--TGSKKEIQQEQELAITGLEVLVVILRAMLKLLDL 162
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Guanine (nucleotide exchange factor in Golgi transport N-terminal-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G7_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 5.880e-8 Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAK 103
DP ALVE+F+NYDCDL AIDLFKRI ++AKVAK
Sbjct: 105 DPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 138
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Aste57867_25067 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS78_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.260e-8 Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGR--AGSEGASASKKDLE--QDRSLQLMGMGGAVAMVSSMVKAADLEE 235
D L E+F+NYDCD ++DLFKRI A++K+AKG+ +GASA+ K QD +L L G+ A+V S+ K A+ +
Sbjct: 461 DGSILGEIFLNYDCDWNSMDLFKRIVDAISKIAKGKKDGAMQGASAAAKQASRTQDTALVLKGLECLTAVVGSLRKVANFTD 542
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: SEC7 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY5_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.300e-8 Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 2
Query: 5 PLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRA---GSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMV 214
P AL E+F+NYDCD AIDL+ RI AL+KVAKGR G A+ S L ++ L+ G+ G + +++SM+
Sbjct: 760 PPALAELFLNYDCDAGAIDLYARIVGALSKVAKGRGLGQGDHSATPSPALLREETHLRSAGLQGLINILTSML 832
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: BIG1, (ArfGEF protein of the BIG/GBF family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI7_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.360e-7 Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 2
Query: 5 PLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRS-LQLMGMGGAVAMVSSMVK------AADLEE 235
P ALVE+F+ YDCDL AIDL+ RI AL+K++KGR S ++ L ++ S L+ G+ G V+++ +M+ +AD+++
Sbjct: 518 PQALVEIFLTYDCDLHAIDLYNRIVNALSKISKGRGMSNSDVSNNPGLLREESYLRKKGLEGLVSILENMLSCVASDVSADMQD 601
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK43_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 4.590e-7 Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKA 220
D ALVE+F+NYDC+ + +DLF+ I +L +VAKGR E + SK+ + LQ+ G+ VA+ S++++
Sbjct: 149 DAQALVEIFLNYDCNFEHVDLFRSIVLSLERVAKGRIPGE-SEGSKRPTDDHTRLQVKGLEALVAITHSLMRS 220
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Match: SEC7 (domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SAJ1_ACAVI) HSP 1 Score: 55.5 bits (132), Expect = 4.600e-7 Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 2
Query: 2 DPLALVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSE-GASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAAD 226
DP ++V+++VNYDCDL A ++F+RI L KVA+G + S+ G+SA+ +++RS++++G+ V + MV D
Sbjct: 438 DPQSMVDIYVNYDCDLTATNIFERIIDGLFKVAQGGSTSDYGSSAAVLQKQRERSMRILGLECLVECLQCMVDWFD 513 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1121.1042.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1121.1042.1 >prot_Ecto-sp9_F_contig1121.1042.1 ID=prot_Ecto-sp9_F_contig1121.1042.1|Name=mRNA_Ecto-sp9_F_contig1121.1042.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=74bp MFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLback to top mRNA from alignment at Ecto-sp9_F_contig1121:667..1400- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1121.1042.1 ID=mRNA_Ecto-sp9_F_contig1121.1042.1|Name=mRNA_Ecto-sp9_F_contig1121.1042.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:667..1400- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1121:667..1400- >mRNA_Ecto-sp9_F_contig1121.1042.1 ID=mRNA_Ecto-sp9_F_contig1121.1042.1|Name=mRNA_Ecto-sp9_F_contig1121.1042.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1121:667..1400- (Ectocarpus species9 EcSCA_722f female)back to top |