mRNA_Ecto-sp9_F_contig11204.1038.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11204.1038.1
Unique NamemRNA_Ecto-sp9_F_contig11204.1038.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11204.1038.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 3.080e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 MPGPGXXXXXNFQQRWEGKGNQSKGKAMNVNDMTPEDREAHLAHKAAQKHAQRLADPEPEKLEVPEQMLKEVYAAAQDVLHAKNDLRGRGSVDEKDGPRARRREVWGGNGSG 336
            MPGPGXXXXXNFQQRWEGKGNQSKGKAMNVNDMTPEDREAHLAHKAAQKHAQRLADPEPEKLEVPEQMLKEVYAAAQDVLHAKNDLRGRGSVDEKDGPRARRREVWGGNGSG
Sbjct:    1 MPGPGXXXXXNFQQRWEGKGNQSKGKAMNVNDMTPEDREAHLAHKAAQKHAQRLADPEPEKLEVPEQMLKEVYAAAQDVLHAKNDLRGRGSVDEKDGPRARRREVWGGNGSG 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11204.1038.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.080e-60100.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11204contigEcto-sp9_F_contig11204:94..3834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue7.2e-53
Seed eggNOG ortholog2880.D8LCZ3
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size337
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11204.1038.1prot_Ecto-sp9_F_contig11204.1038.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11204 94..3834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.7002962-CDS-Ecto-sp9_F_contig11204:93..1641622928362.7002962-CDS-Ecto-sp9_F_contig11204:93..164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 94..164 +
1692277846.8375793-CDS-Ecto-sp9_F_contig11204:93..1641692277846.8375793-CDS-Ecto-sp9_F_contig11204:93..164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 94..164 +
1622928362.7155316-CDS-Ecto-sp9_F_contig11204:2542..26361622928362.7155316-CDS-Ecto-sp9_F_contig11204:2542..2636Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 2543..2636 +
1692277846.849408-CDS-Ecto-sp9_F_contig11204:2542..26361692277846.849408-CDS-Ecto-sp9_F_contig11204:2542..2636Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 2543..2636 +
1622928362.7280908-CDS-Ecto-sp9_F_contig11204:2932..30751622928362.7280908-CDS-Ecto-sp9_F_contig11204:2932..3075Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 2933..3075 +
1692277846.8588898-CDS-Ecto-sp9_F_contig11204:2932..30751692277846.8588898-CDS-Ecto-sp9_F_contig11204:2932..3075Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 2933..3075 +
1622928362.7381487-CDS-Ecto-sp9_F_contig11204:3806..38341622928362.7381487-CDS-Ecto-sp9_F_contig11204:3806..3834Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 3807..3834 +
1692277846.8682108-CDS-Ecto-sp9_F_contig11204:3806..38341692277846.8682108-CDS-Ecto-sp9_F_contig11204:3806..3834Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11204 3807..3834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11204.1038.1

>prot_Ecto-sp9_F_contig11204.1038.1 ID=prot_Ecto-sp9_F_contig11204.1038.1|Name=mRNA_Ecto-sp9_F_contig11204.1038.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp
MPGPGGGGGGNFQQRWEGKGNQSKGKAMNVNDMTPEDREAHLAHKAAQKH
AQRLADPEPEKLEVPEQMLKEVYAAAQDVLHAKNDLRGRGSVDEKDGPRA
RRREVWGGNGSG
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mRNA from alignment at Ecto-sp9_F_contig11204:94..3834+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11204.1038.1 ID=mRNA_Ecto-sp9_F_contig11204.1038.1|Name=mRNA_Ecto-sp9_F_contig11204.1038.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3741bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11204:94..3834+ (Ectocarpus species9 EcSCA_722f female)
ATGCCCGGACCCGGAGGAGGGGGTGGCGGTAATTTCCAGCAGCGGTGGGA
AGGGAAGGGCAACCAATCCAAGTGAGCTGGGCTGGAAAGGAGACGATTTG
GTTTTTGTCGGCGATGGGGGGTGGTATATGTTCTCCCTATTTCGAGGCAG
CCTCTGGCGGTGTGGTGATGGTGTTCTAGTGGTGCTGAAGCAAGCAAAGG
GTAGCGTGTTTTTATTTTCTCGACCCAAGAGCCGGCCAATCAATACCTCC
TGGCTGTGTTGGGATCGACATCTATTCTATGCATGCGCAGGTGCGTATGT
ACAGGGGCGCCCTCTCGCCAAGCCCCGCTCAACTTCCAGGCGGTGCTGCG
ATCTGTTTTACGTGCGCACGCCTAAATTTGTAAATTTGTACAAAAAGTGG
GGCGCTTGGTTTTTTGCTCGGCTAGGCCCTGCTCACCGCACGGCAGGGCG
GCAACACAGAGGCGACCTTGAAATATAGAAAGAGCTGCTGCAGCAGTTAC
TTGTTGTGCAAGCACCGGCTGCTGTTTCGAGATGCCGTTCTGCCTTCTGC
CTGTCTTCCATGAGGACGTGAATCTCCTGTGCCTGTCTGCTTGATTTTCG
TGGGTCCTGAACGTTTGTGAGTCCTTCCATGAGGACATATCGGTACACGC
CTGGAACCTTTGGAGAATGGGAATCACATATCGTCGAGTGTACACCCAAA
TGAAGACTTTCGACAAAGAACCCGACAAAGTCAGGTTAACTCGCCAAGCA
AATTTAGTTCCTGTGAGCAAAGAAAAATGAAACGCCCAGAATGTGAAACG
AAAAACGAATTAAGAGAAACTTAGGGATGCTGAATTTTTGTACTGCTCCA
ATCCCTAAGATGCTGAAGTTTTCAACAAGACTACTCATGACGCATGTAAC
ACTGCGTACCCGGGGGGTGTTGATCGTTTTTGTTTTCGCCGTCCATGCCA
ACCCCACCCCGAGCCGTGGAAGCACGAGAGAAGGGACGAACGTCTCAGTA
GACAAGCTTTCGGTGAACCATGCACGTCATGTAAGGCAGCACTGGCACGC
TCTGCCCTAGGTTTTCACCTTCTGCTTGCTATGCCGGGGGACTCTCGGTT
GTCATGTCAGGCAGACGTCTATCTACATGCAGATTTTAAGGATGTTGTAA
GGACTCCAGAAATGTAGTCACCTCCTGATGTCACCTCCTGATGTGATGGG
GTTGCTTTCTCCCAAGGCGCACTGAGTTGTGTGTGCGCCACCCCAATTGT
TCTGGACGTCGATGTTGGCGCCTTGCGGAATTTTGTTGGGGGGCACCAGG
CGGGGTGACACAGGCAGAAGCCACACAGGACATTGATGCTTCCTAATTTG
TGGTTTATCCTTCTCTCTCTCTCTCCCGATCTTTCTTCCTCTCCCTCTCT
CTCTTTTTGTTAATCCACCAGCAAGGTTCACGTTGTCCATGTGATGCAAC
ACTTGAGTACAACGAGCCGGAAGTGCACGGCTCCAAAGCTCGAAAACCTT
AAATTATTCCCCGAAGCTACAATTGCATTGGTGTTTTCATGCAAGAGGTC
CCCGAGAGAAGGCAATAGAACACTCCACAGAGGACAGGGGCGTCGTTGGA
TATCGTAGAGGCTCAAAACGACGCCAACATATTCTCAACAGGAGGACATC
GATAAAGGTTCTTCCGGTCGAAAGTTCCACACACGAAAAAGCGTTCGCTA
GAGGCATCGAAACGATGCCGATATCTTCTCGACTGTCGGGTGTCGGATAT
TCCTGCCGGAAGTTTCCATATTACTGAACTGCTGGAAGTCCGGTATTCCT
GTCGGCAGTTCCGTCTTCCTCAGGGTGTTCCAAATTCCTGTCGGTAGTTC
CACACAGGCAGTCATATGTTGTTTCAAGCGGCGTCCTCGCGGTTTATACG
AATTCAATGCCCAGAACCAGGGCACATTCCCCTAGTGGGCCAACCCCCGT
TCCTCCCCCCCCCACCACCACCTATCCCGCCCATTTTTTTTTGTTTTGTG
TGTCTCTGGGTCTTGTCTTGTCGTTCACCTGGCGTTCTCTAATATGCGTT
TCTCTTGTGTCGCTAGAAGGAGTCAAATGTTTGACAAATTCGTCCAAGCT
TTGGCGTACACCCGTGCAACACGAAATACATCATGTGGATGATCACTATG
TTGTACCATTTCATGTTTGTTAACCTTGCTGCACAGCTCTCCTTGTGTAC
AGAGACCCATCCTGCGCGTCTTGGTTAATGGCGGTATCGATTTTTCCGAC
GTGTTGCACGTGCTGGCCTGCAGTGGCGGAGCGCGTCCTCACGGGAAGCA
CGGCCACGCTAGCGTTGGTAGGATGGGAAGATTGATGCCTGAGCATCTGG
GCCTTGCATGATGCAGCGTCTTAACCTGCTGCCTGCTGTCATGCACGCGT
GCTTGGTTTGCCCTCGCGCCCCCTCTTGCCTCTCTCTTGTCTGTTGCAGG
GGGAAGGCAATGAACGTGAACGATATGACCCCGGAAGACCGAGAAGCACA
CCTCGCGCACAAGGCCGCGCAAAAGCACGCTCAGCGGTTAGCGGTGAGTC
CGTCTAGGTGGCGTTGACTTGCCCAGTTCAGCCCCCAGAGCGCCTTGGTC
GATTTCGGATGATGCGTGGCATACACTCAATAAGACGTTTCGTTTCTTAG
CCTGTCCCTCGAATCTCCCCGTCTCCCCCTTCTTCTTTCTCTCTTTGCAC
CTGTCTCTACGTTGACGAAGAGATTTACCTAGATGTGGTATGTATCGATC
TTACCCACCCTGCACGCCGCTGTATCTCTACATCTATCTCTATGCCTCCA
TGTAACGACCTGACGCACCCTTCTCTTCTCATTTCTCAGGACCCGGAACC
GGAAAAGCTGGAGGTTCCTGAGCAGATGCTAAAAGAAGTCTACGCGGCGG
CACAGGACGTCCTGCATGCCAAGAACGACCTCCGCGGCAGGGGGTCCGTG
GACGAGAAAGATGGGCCCCGCGCTCGACGCAGGTGCGTGGTCGGGGCCCA
GCGGGCGCGAAGAAGGAAAGGGGGGGGGGATACTCATGCAGCGCATGCCG
TAGTCGTTGGACCATTGACCTCGCATCCCTACGATGCCGGGACGGCAAGA
TAGGCTGAAGAGGGAGGGCGGGGGGGGTTATGTGTTTCCATGTTAGAGGG
GGGAGGGAGTGGGACCACACGTTGTCATGCATTACCCAAGTATATTGTCG
ACCGTTGAGTTTTGACCGAGGGGTTTTGTGAGTAGAATGTTTCTTTTCGT
GAGGTATTTCGGGGGTAGGGAGGGAGAGAGCGGGCGGCAGTGATAAACCC
TACGGCTGCCCAGCAAAATCAGGAGTCCTTGAAACTGAGCTGTCTGATAG
AAGCGAGAACAGCACCAACATCAACAGCAACACTCCCACTCCCACAGCAG
CACAATCCCTCACACCGTCAGCGCTGTGTTCATGATGTACTTGGTCGTCC
TTCTGCTTGCTACCTCTCTTTCCATGCTCCATTTTTTGTAGTGTCCCTTC
TTTTCGGACGTTGAAATTGACGACAGGCACCCCCCAGTCGGCATAGTTAC
AGGTTAAAACTACCACGGTATCCAATCATCTTCGATCCCCTAACGTTCGT
TCTTGATTTGTGAAAAACATCCGCGATATACGCAGTACTTCGTCTTCCAT
AAATCCAAGAATGTCACCTCTGATGACAAAACGGTGGTCCGTTTCGTTTA
TGTCGGCCACCAGGGAGGTGTGGGGAGGGAACGGGTCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11204:94..3834+

>mRNA_Ecto-sp9_F_contig11204.1038.1 ID=mRNA_Ecto-sp9_F_contig11204.1038.1|Name=mRNA_Ecto-sp9_F_contig11204.1038.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11204:94..3834+ (Ectocarpus species9 EcSCA_722f female)
ATGCCCGGACCCGGAGGAGGGGGTGGCGGTAATTTCCAGCAGCGGTGGGA
AGGGAAGGGCAACCAATCCAAATGCCCGGACCCGGAGGAGGGGGTGGCGG
TAATTTCCAGCAGCGGTGGGAAGGGAAGGGCAACCAATCCAAGGGGAAGG
CAATGAACGTGAACGATATGACCCCGGAAGACCGAGAAGCACACCTCGCG
CACAAGGCCGCGCAAAAGCACGCTCAGCGGTTAGCGGGGGAAGGCAATGA
ACGTGAACGATATGACCCCGGAAGACCGAGAAGCACACCTCGCGCACAAG
GCCGCGCAAAAGCACGCTCAGCGGTTAGCGGACCCGGAACCGGAAAAGCT
GGAGGTTCCTGAGCAGATGCTAAAAGAAGTCTACGCGGCGGCACAGGACG
TCCTGCATGCCAAGAACGACCTCCGCGGCAGGGGGTCCGTGGACGAGAAA
GATGGGCCCCGCGCTCGACGCAGGACCCGGAACCGGAAAAGCTGGAGGTT
CCTGAGCAGATGCTAAAAGAAGTCTACGCGGCGGCACAGGACGTCCTGCA
TGCCAAGAACGACCTCCGCGGCAGGGGGTCCGTGGACGAGAAAGATGGGC
CCCGCGCTCGACGCAGGGAGGTGTGGGGAGGGAACGGGTCCGGGGGAGGT
GTGGGGAGGGAACGGGTCCGGG
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