mRNA_Ecto-sp9_F_contig11203.1037.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig11203.1037.1
Unique Name	mRNA_Ecto-sp9_F_contig11203.1037.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11203.1037.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK9_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 8.330e-111
Identity = 233/251 (92.83%), Postives = 234/251 (93.23%), Query Frame = 3

Query:   87 MPPTDCFDDTGASCASMRCGVPEPGLLPTTRSPLHHGTDPDLSAPTPSPSGIAATGLDLSPVMGPTPTVIVTKAKRKLRGSPARGGSCGGGPVSPMAARLSRGFPPSSIRHNTNSFSGVSNPSTPHGGGRSCXXXXXXXXXXXXXXXGEATQQRLGAGGTGGLLDDKDGPPSLAPLGSVAPSARVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-QVDIKDMMLKAKKASDNIRLLLHAKV 836
            MPPTDCFDD GASCASM  GVPEPGLLPTTRSPLHHGTDPDLSAPTPSPSG+AATGLDLSPVMGPTPTV VTKAKRKLRGSPARGG CGGGPVSPMA RLSRGFPPSSIR NT  FSG SNPSTPH GG   XXXXXXXXXXXXXXXGEATQQRLGAGGTGGLLDDKDGPPSLAPLGSVAPS RVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QVDIKDMMLKAKKASDNIRLLLHAKV
Sbjct:    1 MPPTDCFDDAGASCASMS-GVPEPGLLPTTRSPLHHGTDPDLSAPTPSPSGVAATGLDLSPVMGPTPTVFVTKAKRKLRGSPARGGGCGGGPVSPMATRLSRGFPPSSIRPNTTGFSGASNPSTPHRGGSXXXXXXXXXXXXXXXXXGEATQQRLGAGGTGGLLDDKDGPPSLAPLGSVAPSTRVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVDIKDMMLKAKKASDNIRLLLHAKV 250

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11203.1037.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11203.1037.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	8.330e-111	92.83	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11203	contig	Ecto-sp9_F_contig11203:2005..3897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Zinc finger, TAZ-type
Ec32 ortholog	Ec-05_003120.1
Exons	3
Model size	839
Cds size	753
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11203.1037.1	prot_Ecto-sp9_F_contig11203.1037.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig11203 2091..3897 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928362.626594-UTR-Ecto-sp9_F_contig11203:2004..2090	1622928362.626594-UTR-Ecto-sp9_F_contig11203:2004..2090	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11203 2005..2090 +
1692277846.7932167-UTR-Ecto-sp9_F_contig11203:2004..2090	1692277846.7932167-UTR-Ecto-sp9_F_contig11203:2004..2090	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11203 2005..2090 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928362.6371548-CDS-Ecto-sp9_F_contig11203:2090..2146	1622928362.6371548-CDS-Ecto-sp9_F_contig11203:2090..2146	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11203 2091..2146 +
1692277846.805449-CDS-Ecto-sp9_F_contig11203:2090..2146	1692277846.805449-CDS-Ecto-sp9_F_contig11203:2090..2146	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11203 2091..2146 +
1622928362.6488326-CDS-Ecto-sp9_F_contig11203:2494..2636	1622928362.6488326-CDS-Ecto-sp9_F_contig11203:2494..2636	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11203 2495..2636 +
1692277846.8159661-CDS-Ecto-sp9_F_contig11203:2494..2636	1692277846.8159661-CDS-Ecto-sp9_F_contig11203:2494..2636	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11203 2495..2636 +
1622928362.6616712-CDS-Ecto-sp9_F_contig11203:3342..3897	1622928362.6616712-CDS-Ecto-sp9_F_contig11203:3342..3897	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11203 3343..3897 +
1692277846.8268616-CDS-Ecto-sp9_F_contig11203:3342..3897	1692277846.8268616-CDS-Ecto-sp9_F_contig11203:3342..3897	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11203 3343..3897 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig11203:2005..3897+
coding sequence from alignment at Ecto-sp9_F_contig11203:2005..3897+

protein sequence of mRNA_Ecto-sp9_F_contig11203.1037.1

>prot_Ecto-sp9_F_contig11203.1037.1 ID=prot_Ecto-sp9_F_contig11203.1037.1|Name=mRNA_Ecto-sp9_F_contig11203.1037.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=251bp
MPPTDCFDDTGASCASMRCGVPEPGLLPTTRSPLHHGTDPDLSAPTPSPS
GIAATGLDLSPVMGPTPTVIVTKAKRKLRGSPARGGSCGGGPVSPMAARL
SRGFPPSSIRHNTNSFSGVSNPSTPHGGGRSCCITQHDASSSAAAAEGEA
TQQRLGAGGTGGLLDDKDGPPSLAPLGSVAPSARVAAAAAPTPESAAGLE
AGGGGSEASSSCGARQQQQQQQKQQVDIKDMMLKAKKASDNIRLLLHAKV
*

mRNA from alignment at Ecto-sp9_F_contig11203:2005..3897+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig11203.1037.1 ID=mRNA_Ecto-sp9_F_contig11203.1037.1|Name=mRNA_Ecto-sp9_F_contig11203.1037.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1893bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11203:2005..3897+ (Ectocarpus species9 EcSCA_722f female)
CAAGCCGAGACCCGAGATACAAGTAGACCACCACTCACTTCGCGCCGTTC
AACTCGACCTCGGCCGTTCCTTTTCCGTCTGCGGCCATGCCTCCGACCGA
CTGCTTCGATGACACGGGTGCAAGCTGTGCATCCATGAGGTGGTGAGGGC
GAAAAACCTGCAGATTACAGATTGTCGAGTGTTGTTTTGGTCGATTGTGT
GTGCGGTTGGCCATACGCTGGCTTGAAAGGCATAAGACAGACGACAGCTT
TGACGATAGCTGTGTTGCGTTTGCTGTTCCTGCCTGGTGCAGAAAAGGGT
TCTCACGCAGAGGTGTTCTCTTTTGCTCCCTGCCTCTCGGCAACCTCAGC
GTCAAGCCCCATGCGATGCTGCGTTACGCTGTCGTGTAGTCCAAGCACCC
GGAAACTCAGACCCGGTTTTTTCCTGGTTTTTCTTTGCGCTGGCCTCTGG
CCTCCCCTCTCTCTCCCTCCGCGGCTCTCTGTTTTTTCAGCGGTGTTCCC
GAGCCGGGGCTGTTGCCCACGACAAGGTCGCCACTGCATCACGGTACTGA
CCCTGACCTCTCAGCTCCCACCCCGTCGCCTTCGGGGATCGCGGCTACGG
GGCTCGACTTGTCCCCTGTGATGGGACCAACGGTGAGCAGCAGCAGCAGC
AGCAGCAGCAGCGGGTGGGGTGTGGCGGCCGGAAATCGTGTAATTTTTTC
CAGGCAGCGAGCAGCAGTCTCTCCGTCTGTTTTTCTTTGAGGAAAATCAA
CTCTTCCCGAGAGAGCACACCACTTGAAGGGACGCGAATTGAATCAGAAC
CTATTGGGATGCTCGGCGTGCGCTTGTGCTGCGCCGGATGCGTTCAGAAT
TGCACCCTGGTGGCGTTGGTTGGCCCACAGTGTGCTGCCCTCCCCTGTGG
CATCGAGGTTGAGCCTTTCGAACCCGTCATACATCTGCACCCAACCATCC
CCTTCGCGTTGGTATTTGTAGTCTTTCGGAAGCATCCATCGAAAAGTGAT
CTTGCCTTGTTGCCTTGGTGTTGGTGTGTGTGGCAAACATGTGTTTGCGC
GTGCGTGTTGCTCGTGCAAACACGGACGGCTGGCTGTGCAAACGCACACA
GAGGCACCAGTGCCTACTAGACGCCACACAAACGCTCCCCTCCGCATTGG
GGGGGGGCTCTTACGCGTGTGTGCATTTAAGTTTTCTGGGACAGAAACGC
CCGCCGCCACCGCCGGCGACATTGATTTTTTTCCTGTGTGCGCCGAAAAG
CTGAGTGTGCGTTGTTTGTTTCGTGCAACAACCGCCCCTATAACCCCCTC
ATCATATTCCGCTCTCTTTTTTTTCGCTGAACGAACAGCCGACTGTTATC
GTGACCAAGGCAAAGCGGAAGCTGCGAGGCAGCCCGGCGAGAGGGGGGAG
CTGCGGGGGAGGCCCCGTCTCTCCCATGGCGGCCCGACTCTCGAGAGGCT
TCCCTCCTTCGAGTATCAGACACAACACTAATAGTTTCAGCGGGGTGTCG
AACCCATCAACACCACACGGCGGCGGCAGGAGCTGTTGCATCACGCAACA
CGACGCTTCGTCGTCAGCAGCAGCAGCTGAAGGGGAGGCAACACAGCAGA
GGCTGGGAGCGGGAGGGACGGGGGGGCTACTGGACGACAAGGATGGACCG
CCCTCGCTTGCCCCTCTCGGAAGCGTTGCTCCTAGCGCCAGGGTCGCGGC
CGCCGCCGCTCCGACCCCCGAGAGTGCCGCGGGTCTCGAGGCCGGCGGCG
GTGGTTCCGAAGCCAGCAGCAGCTGCGGGGCGCGACAGCAGCAGCAGCAG
CAACAGAAGCAGCAAGTGGACATCAAGGACATGATGCTCAAGGCTAAAAA
AGCCTCGGACAATATCCGCCTGCTACTGCACGCCAAGGTATGA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11203:2005..3897+

>mRNA_Ecto-sp9_F_contig11203.1037.1 ID=mRNA_Ecto-sp9_F_contig11203.1037.1|Name=mRNA_Ecto-sp9_F_contig11203.1037.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1506bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11203:2005..3897+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCCGACCGACTGCTTCGATGACACGGGTGCAAGCTGTGCATCCAT
GAGGTGATGCCTCCGACCGACTGCTTCGATGACACGGGTGCAAGCTGTGC
ATCCATGAGGTGCGGTGTTCCCGAGCCGGGGCTGTTGCCCACGACAAGGT
CGCCACTGCATCACGGTACTGACCCTGACCTCTCAGCTCCCACCCCGTCG
CCTTCGGGGATCGCGGCTACGGGGCTCGACTTGTCCCCTGTGATGGGACC
AACGCGGTGTTCCCGAGCCGGGGCTGTTGCCCACGACAAGGTCGCCACTG
CATCACGGTACTGACCCTGACCTCTCAGCTCCCACCCCGTCGCCTTCGGG
GATCGCGGCTACGGGGCTCGACTTGTCCCCTGTGATGGGACCAACGCCGA
CTGTTATCGTGACCAAGGCAAAGCGGAAGCTGCGAGGCAGCCCGGCGAGA
GGGGGGAGCTGCGGGGGAGGCCCCGTCTCTCCCATGGCGGCCCGACTCTC
GAGAGGCTTCCCTCCTTCGAGTATCAGACACAACACTAATAGTTTCAGCG
GGGTGTCGAACCCATCAACACCACACGGCGGCGGCAGGAGCTGTTGCATC
ACGCAACACGACGCTTCGTCGTCAGCAGCAGCAGCTGAAGGGGAGGCAAC
ACAGCAGAGGCTGGGAGCGGGAGGGACGGGGGGGCTACTGGACGACAAGG
ATGGACCGCCCTCGCTTGCCCCTCTCGGAAGCGTTGCTCCTAGCGCCAGG
GTCGCGGCCGCCGCCGCTCCGACCCCCGAGAGTGCCGCGGGTCTCGAGGC
CGGCGGCGGTGGTTCCGAAGCCAGCAGCAGCTGCGGGGCGCGACAGCAGC
AGCAGCAGCAACAGAAGCAGCAAGTGGACATCAAGGACATGATGCTCAAG
GCTAAAAAAGCCTCGGACAATATCCGCCTGCTACTGCACGCCAAGGTATG
ACCGACTGTTATCGTGACCAAGGCAAAGCGGAAGCTGCGAGGCAGCCCGG
CGAGAGGGGGGAGCTGCGGGGGAGGCCCCGTCTCTCCCATGGCGGCCCGA
CTCTCGAGAGGCTTCCCTCCTTCGAGTATCAGACACAACACTAATAGTTT
CAGCGGGGTGTCGAACCCATCAACACCACACGGCGGCGGCAGGAGCTGTT
GCATCACGCAACACGACGCTTCGTCGTCAGCAGCAGCAGCTGAAGGGGAG
GCAACACAGCAGAGGCTGGGAGCGGGAGGGACGGGGGGGCTACTGGACGA
CAAGGATGGACCGCCCTCGCTTGCCCCTCTCGGAAGCGTTGCTCCTAGCG
CCAGGGTCGCGGCCGCCGCCGCTCCGACCCCCGAGAGTGCCGCGGGTCTC
GAGGCCGGCGGCGGTGGTTCCGAAGCCAGCAGCAGCTGCGGGGCGCGACA
GCAGCAGCAGCAGCAACAGAAGCAGCAAGTGGACATCAAGGACATGATGC
TCAAGGCTAAAAAAGCCTCGGACAATATCCGCCTGCTACTGCACGCCAAG
GTATGA