mRNA_Ecto-sp9_F_contig11202.1036.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11202.1036.1
Unique NamemRNA_Ecto-sp9_F_contig11202.1036.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11202.1036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW05_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.870e-8
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:    1 LDWGPWCLQIKAPAAATTEHDDRA 72
            + WG WCLQ+KAPAAATTEHDDRA
Sbjct:    1 MGWGAWCLQVKAPAAATTEHDDRA 24
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11202.1036.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.870e-883.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11202contigEcto-sp9_F_contig11202:1492..1942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002870.1
Exons2
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.5776901-CDS-Ecto-sp9_F_contig11202:1491..15941622928362.5776901-CDS-Ecto-sp9_F_contig11202:1491..1594Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11202 1492..1594 -
1692277846.7718017-CDS-Ecto-sp9_F_contig11202:1491..15941692277846.7718017-CDS-Ecto-sp9_F_contig11202:1491..1594Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11202 1492..1594 -
1622928362.58966-CDS-Ecto-sp9_F_contig11202:1892..19421622928362.58966-CDS-Ecto-sp9_F_contig11202:1892..1942Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11202 1893..1942 -
1692277846.7823625-CDS-Ecto-sp9_F_contig11202:1892..19421692277846.7823625-CDS-Ecto-sp9_F_contig11202:1892..1942Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11202 1893..1942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11202.1036.1prot_Ecto-sp9_F_contig11202.1036.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11202 1492..1942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11202.1036.1

>prot_Ecto-sp9_F_contig11202.1036.1 ID=prot_Ecto-sp9_F_contig11202.1036.1|Name=mRNA_Ecto-sp9_F_contig11202.1036.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=51bp
LDWGPWCLQIKAPAAATTEHDDRAPTADSRSLERSSRKECLNSEHGELMR
*
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mRNA from alignment at Ecto-sp9_F_contig11202:1492..1942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11202.1036.1 ID=mRNA_Ecto-sp9_F_contig11202.1036.1|Name=mRNA_Ecto-sp9_F_contig11202.1036.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=451bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11202:1492..1942- (Ectocarpus species9 EcSCA_722f female)
TTGGACTGGGGGCCTTGGTGTCTCCAGATAAAGGCGCCAGCAGCAGCAAC
GTGAGTAGATTGTTGAAATCGATCAACACATGCGACCCAAAATCACGAGA
GCCAGCGAAGAGTGCCAGCGAGCACCGCACAGGATTGCAGGATCGCTAGA
GAGATGCACGAGCCCAGCAGAGAGGAGATAGTCCACACAGACTGACTGCA
ATGTGCTTGTCACACAGAATCCGCGCAACCACCTTGCTCACGTATGCTGA
CGACCGGCTCGCGCACCCTATTCCCCTGCCGTGTGCCTCCATGCTCGCCC
GTGCGTCCACGTGATGTCCGCACCGATTTTTGCAGATTTTTGAATCAGGA
CCGAGCACGATGACCGAGCACCGACAGCGGATAGTAGGAGCTTGGAGCGC
TCCAGCAGGAAGGAGTGCCTCAACAGCGAACATGGTGAGCTGATGAGATA
A
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11202:1492..1942-

>mRNA_Ecto-sp9_F_contig11202.1036.1 ID=mRNA_Ecto-sp9_F_contig11202.1036.1|Name=mRNA_Ecto-sp9_F_contig11202.1036.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11202:1492..1942- (Ectocarpus species9 EcSCA_722f female)
TTGGACTGGGGGCCTTGGTGTCTCCAGATAAAGGCGCCAGCAGCAGCAAC
TTGGACTGGGGGCCTTGGTGTCTCCAGATAAAGGCGCCAGCAGCAGCAAC
GACCGAGCACGATGACCGAGCACCGACAGCGGATAGTAGGAGCTTGGAGC
GCTCCAGCAGGAAGGAGTGCCTCAACAGCGAACATGGTGAGCTGATGAGA
TAAGACCGAGCACGATGACCGAGCACCGACAGCGGATAGTAGGAGCTTGG
AGCGCTCCAGCAGGAAGGAGTGCCTCAACAGCGAACATGGTGAGCTGATG
AGATAA
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