mRNA_Ecto-sp9_F_contig112.1033.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig112.1033.1
Unique NamemRNA_Ecto-sp9_F_contig112.1033.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig112.1033.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig112contigEcto-sp9_F_contig112:45876..46146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_000520.1
Exons1
Model size271
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.1561506-UTR-Ecto-sp9_F_contig112:45875..459871622928362.1561506-UTR-Ecto-sp9_F_contig112:45875..45987Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig112 45876..45987 +
1692277846.4425151-UTR-Ecto-sp9_F_contig112:45875..459871692277846.4425151-UTR-Ecto-sp9_F_contig112:45875..45987Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig112 45876..45987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928362.1672866-CDS-Ecto-sp9_F_contig112:45987..461461622928362.1672866-CDS-Ecto-sp9_F_contig112:45987..46146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig112 45988..46146 +
1692277846.4525995-CDS-Ecto-sp9_F_contig112:45987..461461692277846.4525995-CDS-Ecto-sp9_F_contig112:45987..46146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig112 45988..46146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig112.1033.1prot_Ecto-sp9_F_contig112.1033.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig112 45988..46146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig112.1033.1

>prot_Ecto-sp9_F_contig112.1033.1 ID=prot_Ecto-sp9_F_contig112.1033.1|Name=mRNA_Ecto-sp9_F_contig112.1033.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp
MCFGLLYMPDRVSGVHFPGPQQGPLGSAREGMVDVYPALSVIFVPACPLP
LLK
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mRNA from alignment at Ecto-sp9_F_contig112:45876..46146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig112.1033.1 ID=mRNA_Ecto-sp9_F_contig112.1033.1|Name=mRNA_Ecto-sp9_F_contig112.1033.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=271bp|location=Sequence derived from alignment at Ecto-sp9_F_contig112:45876..46146+ (Ectocarpus species9 EcSCA_722f female)
TTGCACGAACCGCGTATTACCGCCACCCAGCTGTGCTCAGCAAATGCAAT
GTGCGAGGAGACCGTGGCATCTTTGTTACGCAATGCAAGAAAGAGGTGCA
GATTAAAACAAAATGTGTTTTGGACTGCTGTACATGCCCGATAGGGTTTC
CGGAGTTCATTTTCCCGGCCCACAACAAGGACCCCTTGGTTCAGCCAGAG
AAGGCATGGTAGATGTGTACCCGGCACTCTCAGTGATATTTGTTCCAGCT
TGCCCTCTCCCCCTGCTGAAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig112:45876..46146+

>mRNA_Ecto-sp9_F_contig112.1033.1 ID=mRNA_Ecto-sp9_F_contig112.1033.1|Name=mRNA_Ecto-sp9_F_contig112.1033.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig112:45876..46146+ (Ectocarpus species9 EcSCA_722f female)
ATGTGTTTTGGACTGCTGTACATGCCCGATAGGGTTTCCGGAGTTCATTT
TCCCGGCCCACAACAAGGACCCCTTGGTTCAGCCAGAGAAGGCATGGTAG
ATGTGTACCCGGCACTCTCAGTGATATTTGTTCCAGCTTGCCCTCTCCCC
CTGCTGAAAATGTGTTTTGGACTGCTGTACATGCCCGATAGGGTTTCCGG
AGTTCATTTTCCCGGCCCACAACAAGGACCCCTTGGTTCAGCCAGAGAAG
GCATGGTAGATGTGTACCCGGCACTCTCAGTGATATTTGTTCCAGCTTGC
CCTCTCCCCCTGCTGAAA
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