mRNA_Ecto-sp9_F_contig11196.1028.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11196.1028.1
Unique NamemRNA_Ecto-sp9_F_contig11196.1028.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11196.1028.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-7
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = -2 
Query:  160 EWPAAIDSVGTGERSWLARSLRG-----A*SFCDDEASLCVRVDESTNDVRGRTPLSHLMVS 330
            +W AA+DSV TGERS L RSL G     A +    EAS C  VD+   DV GRTPLSHL +S
Sbjct:  997 QWQAAVDSVDTGERSGLGRSLWGGENAKAWNGAGHEAS-CAEVDD-VGDVNGRTPLSHLALS 1056
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BLAST of mRNA_Ecto-sp9_F_contig11196.1028.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.230e-5
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = -2 
Query:  160 EWPAAIDSVGTGERSWLARSLRGA*------SFCDDEASLCVRVDESTNDVRGRTPLSHLMVS 330
            EWPAAIDSV TGER  L RSL G           D++A  C   D+  +DV GRTP+S L +S
Sbjct:  734 EWPAAIDSVDTGERFGLERSLWGGERDGEVWGIADNDA-FCT--DDGDSDVNGRTPMSDLTLS 793
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11196.1028.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.430e-754.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
3'-5'2.230e-549.21exonuclease domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11196contigEcto-sp9_F_contig11196:348..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928361.0063107-UTR-Ecto-sp9_F_contig11196:347..3721622928361.0063107-UTR-Ecto-sp9_F_contig11196:347..372Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11196 348..372 +
1692277845.9123065-UTR-Ecto-sp9_F_contig11196:347..3721692277845.9123065-UTR-Ecto-sp9_F_contig11196:347..372Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11196 348..372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928361.0275629-CDS-Ecto-sp9_F_contig11196:372..6781622928361.0275629-CDS-Ecto-sp9_F_contig11196:372..678Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11196 373..678 +
1692277845.9231982-CDS-Ecto-sp9_F_contig11196:372..6781692277845.9231982-CDS-Ecto-sp9_F_contig11196:372..678Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11196 373..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11196.1028.1prot_Ecto-sp9_F_contig11196.1028.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11196 373..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11196.1028.1

>prot_Ecto-sp9_F_contig11196.1028.1 ID=prot_Ecto-sp9_F_contig11196.1028.1|Name=mRNA_Ecto-sp9_F_contig11196.1028.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=102bp
MLFPCRQQRQVVSELALLLPGVNPRLWHSFAHPCRESLRGKHELGETIRC
DSGVRPLTSLVLSSTRTHNDASSSQKLHAPRKLRASQLLSPVPTESMAAG
HS
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mRNA from alignment at Ecto-sp9_F_contig11196:348..678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11196.1028.1 ID=mRNA_Ecto-sp9_F_contig11196.1028.1|Name=mRNA_Ecto-sp9_F_contig11196.1028.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=331bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11196:348..678+ (Ectocarpus species9 EcSCA_722f female)
AGCTGGTACTGCTTAAAGTCCGCCCATGTTGTTTCCCTGCCGCCAGCAGC
GCCAGGTCGTCTCTGAGCTTGCGCTTCTCCTCCCTGGTGTGAACCCTCGA
TTGTGGCATTCTTTCGCCCATCCTTGCCGTGAATCGCTTCGAGGAAAGCA
TGAGCTTGGAGAAACCATCAGGTGCGACAGTGGCGTTCGGCCTCTGACAT
CATTGGTACTTTCATCCACACGAACGCACAACGACGCCTCATCATCGCAG
AAACTTCATGCCCCCCGTAAGCTCCGGGCGAGCCAACTCCTCTCGCCCGT
GCCTACCGAGTCGATGGCGGCCGGCCACTCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11196:348..678+

>mRNA_Ecto-sp9_F_contig11196.1028.1 ID=mRNA_Ecto-sp9_F_contig11196.1028.1|Name=mRNA_Ecto-sp9_F_contig11196.1028.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11196:348..678+ (Ectocarpus species9 EcSCA_722f female)
ATGTTGTTTCCCTGCCGCCAGCAGCGCCAGGTCGTCTCTGAGCTTGCGCT
TCTCCTCCCTGGTGTGAACCCTCGATTGTGGCATTCTTTCGCCCATCCTT
GCCGTGAATCGCTTCGAGGAAAGCATGAGCTTGGAGAAACCATCAGGTGC
GACAGTGGCGTTCGGCCTCTGACATCATTGGTACTTTCATCCACACGAAC
GCACAACGACGCCTCATCATCGCAGAAACTTCATGCCCCCCGTAAGCTCC
GGGCGAGCCAACTCCTCTCGCCCGTGCCTACCGAGTCGATGGCGGCCGGC
CACTCCATGTTGTTTCCCTGCCGCCAGCAGCGCCAGGTCGTCTCTGAGCT
TGCGCTTCTCCTCCCTGGTGTGAACCCTCGATTGTGGCATTCTTTCGCCC
ATCCTTGCCGTGAATCGCTTCGAGGAAAGCATGAGCTTGGAGAAACCATC
AGGTGCGACAGTGGCGTTCGGCCTCTGACATCATTGGTACTTTCATCCAC
ACGAACGCACAACGACGCCTCATCATCGCAGAAACTTCATGCCCCCCGTA
AGCTCCGGGCGAGCCAACTCCTCTCGCCCGTGCCTACCGAGTCGATGGCG
GCCGGCCACTCC
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