mRNA_Ecto-sp9_F_contig11193.1024.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig11193.1024.1
Unique Name	mRNA_Ecto-sp9_F_contig11193.1024.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN71_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.310e-44
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 1

Query:    1 MMPTPPKWSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            MMPTPPKWSRGPLNELHQAA+RGSAERINSLLTRGVININQGDPAGRTPL+CAAQ GCPRVVGILLNKGANMSIACD
Sbjct:    1 MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACD 77

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BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.380e-34
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 1

Query:    1 MMPTPPKWSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGAN 213
            MMPTPPK  RGPLNELHQAA+RG  ERINS+LTRGVININQGDP GRTPL+CAAQ GC RVVGILLNKGAN
Sbjct:    1 MMPTPPKLPRGPLNELHQAAMRGFTERINSVLTRGVININQGDPTGRTPLMCAAQKGCMRVVGILLNKGAN 71

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BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.640e-17
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 1

Query:    4 MPTPPK---WSRGPLNELHQAAVRGSAERINSLLT-RGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            MP PP    W RGP+NELH AA+ GSAER  +LL+ R  I++NQGD AG TPL+ A  NG PRVV ILLN GANMSI  D
Sbjct:    1 MPPPPPTQGWPRGPMNELHLAAMDGSAERALALLSSRDPIDVNQGDSAGCTPLMLATTNGHPRVVRILLNHGANMSIMDD 80

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.120e-16
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 1

Query:    1 MMPTPPKWSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            +MP   KW RGP NELH AA  GS +R  ++L+ G+ININQGDP G TPL+ A+Q G  R+V IL+ +GAN+ I  D
Sbjct:    2 IMPAQEKWPRGPKNELHFAADTGSTQRTAAILSSGLININQGDPDGWTPLMVASQRGYTRIVRILVKEGANVLIVAD 78

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y7_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.760e-15
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1

Query:   19 KWSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIA 225
            +W RGP NELH+AA  GSA+R  +LL+ G +++NQGDPAG TPL+ A+  G   +V ILL+ GAN S A
Sbjct:    4 QWPRGPRNELHEAAHFGSADRTRALLSSGAVDVNQGDPAGFTPLMLASMEGQSHIVKILLDNGANSSTA 72

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BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 7.400e-14
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1

Query:   22 WSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            W RGP N+LH+AA  GSA+R+++LL+ G ++INQG+P G TPL+ A + G   V   LL KGAN+S+A D
Sbjct:   28 WPRGPTNQLHKAAYHGSADRVDALLSTGSVDINQGNPKGWTPLMLATEKGHSLVAKSLLEKGANVSVAGD 97

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-11
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1

Query:   22 WSRGPLNELHQAAVRGSAERINSLL-TRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            W RGP N+LH+AA  GS ER+ +LL +R  I+INQG   G TPL+ AA  G  RVV IL NKGAN+S+  D
Sbjct:   11 WPRGPQNDLHRAANDGSIERVVALLASRPSIDINQGAEYGWTPLMLAAWRGSSRVVRILPNKGANVSVVAD 81

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BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 9.070e-11
Identity = 40/94 (42.55%), Postives = 49/94 (52.13%), Query Frame = 1

Query:   13 PPKWSRGPLNELHQAAVRGSAERINSLLT---------------------RGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            PPKW RGP NELH AA  G      +LL+                      G I+IN+GD  G TPL+ AAQ G PRVV +LL  GAN+++  D
Sbjct:   10 PPKWPRGPTNELHNAAGSGCIPHTAALLSGDQEFSHKGHGCCAKHKTGVSAGEIDINEGDETGTTPLIYAAQGGYPRVVRMLLQAGANVAVEAD 103

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.820e-10
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1

Query:   22 WSRGPLNELHQAAVRGSAERINSLL-TRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANMSIACD 231
            W RGP N+LH+AA  GS ER+ +LL +R  I I+ G   G TPL+ AA  G  RVV ILLNKGAN+S+  +
Sbjct:   11 WPRGPQNDLHRAANDGSVERVVALLASRSSIAIDAGAEYGWTPLMLAAWRGSSRVVRILLNKGANVSVVAE 81

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.140e-8
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1

Query:    4 MPTPPKWSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPLVCAAQNGCPRVVGILLNKGANM 216
            +P P +W  GP N L  AA  GS +   +LL  G  +I+QG+  G TPL+ A++ G PR+V +LLNKGA +
Sbjct:    4 VPLPQQWPHGPSNPLQAAADCGSFKTAANLLASGAFDIDQGNEVGWTPLMMASRGGYPRIVRMLLNKGAQV 74

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11193.1024.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
EsV-1-199	1.310e-44	96.10	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
Uncharacterized	2.380e-34	85.92	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
EsV-1-199	9.640e-17	62.50	n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI	[more]
EsV-1-199	4.120e-16	54.55	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
EsV-1-199	7.760e-15	55.07	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
EsV-1-199	7.400e-14	52.86	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
EsV-1-199	1.080e-11	56.34	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8...	[more]
EsV-1-199	9.070e-11	42.55	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
Uncharacterized	2.820e-10	53.52	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.140e-8	45.07	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11193	contig	Ecto-sp9_F_contig11193:2588..3220 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	157.1
Seed ortholog evalue	8.8e-36
Seed eggNOG ortholog	2880.D7FN71
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG4177@2759
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	635
Cds size	633
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928360.7530646-CDS-Ecto-sp9_F_contig11193:2587..3220	1622928360.7530646-CDS-Ecto-sp9_F_contig11193:2587..3220	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11193 2588..3220 -
1692277845.8201413-CDS-Ecto-sp9_F_contig11193:2587..3220	1692277845.8201413-CDS-Ecto-sp9_F_contig11193:2587..3220	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11193 2588..3220 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11193.1024.1	prot_Ecto-sp9_F_contig11193.1024.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig11193 2588..3220 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig11193:2588..3220-
coding sequence from alignment at Ecto-sp9_F_contig11193:2588..3220-

protein sequence of mRNA_Ecto-sp9_F_contig11193.1024.1

>prot_Ecto-sp9_F_contig11193.1024.1 ID=prot_Ecto-sp9_F_contig11193.1024.1|Name=mRNA_Ecto-sp9_F_contig11193.1024.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=211bp
MMPTPPKWSRGPLNELHQAAVRGSAERINSLLTRGVININQGDPAGRTPL
VCAAQNGCPRVVGILLNKGANMSIACDMGFTALLISAQNGHVVVTTTLLT
AGADLEQADNQGFRVLHMASLNGHSEVMKILMNAGANVDCRGFGGETPLY
LAASKGHVGAMRLLVDAKANPLLTAAGGDSSATQFPLDIAATGGQSDVVH
QLIQQLGIEVC

mRNA from alignment at Ecto-sp9_F_contig11193:2588..3220-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig11193.1024.1 ID=mRNA_Ecto-sp9_F_contig11193.1024.1|Name=mRNA_Ecto-sp9_F_contig11193.1024.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11193:2588..3220- (Ectocarpus species9 EcSCA_722f female)
ATGATGCCTACCCCACCGAAATGGTCTCGAGGCCCATTGAACGAACTGCA
CCAGGCCGCAGTTCGTGGTTCCGCCGAGCGTATCAATTCCCTGCTAACCA
GGGGCGTCATAAACATCAACCAAGGCGATCCGGCGGGCCGGACTCCCCTC
GTGTGCGCCGCCCAAAATGGCTGCCCGCGCGTTGTCGGCATCCTGCTGAA
CAAGGGAGCCAACATGTCGATAGCGTGTGACATGGGATTTACTGCCTTGC
TCATTTCCGCTCAAAATGGACACGTGGTGGTGACTACAACATTGCTGACA
GCCGGTGCCGACCTCGAACAAGCCGACAACCAAGGCTTCAGAGTGCTTCA
TATGGCTAGCTTAAACGGGCACTCCGAGGTGATGAAGATACTGATGAATG
CGGGCGCGAACGTTGACTGCCGCGGCTTCGGTGGAGAGACACCGCTATAC
CTGGCGGCATCGAAGGGACACGTGGGCGCGATGCGGCTGCTCGTTGATGC
GAAAGCGAACCCGTTGTTGACTGCTGCAGGAGGGGACAGCAGTGCAACTC
AATTCCCGTTGGATATAGCGGCAACAGGAGGGCAGTCAGACGTGGTGCAC
CAGCTGATACAGCAGCTGGGGATCGAAGTCTGT

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11193:2588..3220-

>mRNA_Ecto-sp9_F_contig11193.1024.1 ID=mRNA_Ecto-sp9_F_contig11193.1024.1|Name=mRNA_Ecto-sp9_F_contig11193.1024.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11193:2588..3220- (Ectocarpus species9 EcSCA_722f female)
ATGATGCCTACCCCACCGAAATGGTCTCGAGGCCCATTGAACGAACTGCA
CCAGGCCGCAGTTCGTGGTTCCGCCGAGCGTATCAATTCCCTGCTAACCA
GGGGCGTCATAAACATCAACCAAGGCGATCCGGCGGGCCGGACTCCCCTC
GTGTGCGCCGCCCAAAATGGCTGCCCGCGCGTTGTCGGCATCCTGCTGAA
CAAGGGAGCCAACATGTCGATAGCGTGTGACATGGGATTTACTGCCTTGC
TCATTTCCGCTCAAAATGGACACGTGGTGGTGACTACAACATTGCTGACA
GCCGGTGCCGACCTCGAACAAGCCGACAACCAAGGCTTCAGAGTGCTTCA
TATGGCTAGCTTAAACGGGCACTCCGAGGTGATGAAGATACTGATGAATG
CGGGCGCGAACGTTGACTGCCGCGGCTTCGGTGGAGAGACACCGCTATAC
CTGGCGGCATCGAAGGGACACGTGGGCGCGATGCGGCTGCTCGTTGATGC
GAAAGCGAACCCGTTGTTGACTGCTGCAGGAGGGGACAGCAGTGCAACTC
AATTCCCGTTGGATATAGCGGCAACAGGAGGGCAGTCAGACGTGGTGCAC
CAGCTGATACAGCAGCTGGGGATCGAAGTCTGTATGATGCCTACCCCACC
GAAATGGTCTCGAGGCCCATTGAACGAACTGCACCAGGCCGCAGTTCGTG
GTTCCGCCGAGCGTATCAATTCCCTGCTAACCAGGGGCGTCATAAACATC
AACCAAGGCGATCCGGCGGGCCGGACTCCCCTCGTGTGCGCCGCCCAAAA
TGGCTGCCCGCGCGTTGTCGGCATCCTGCTGAACAAGGGAGCCAACATGT
CGATAGCGTGTGACATGGGATTTACTGCCTTGCTCATTTCCGCTCAAAAT
GGACACGTGGTGGTGACTACAACATTGCTGACAGCCGGTGCCGACCTCGA
ACAAGCCGACAACCAAGGCTTCAGAGTGCTTCATATGGCTAGCTTAAACG
GGCACTCCGAGGTGATGAAGATACTGATGAATGCGGGCGCGAACGTTGAC
TGCCGCGGCTTCGGTGGAGAGACACCGCTATACCTGGCGGCATCGAAGGG
ACACGTGGGCGCGATGCGGCTGCTCGTTGATGCGAAAGCGAACCCGTTGT
TGACTGCTGCAGGAGGGGACAGCAGTGCAACTCAATTCCCGTTGGATATA
GCGGCAACAGGAGGGCAGTCAGACGTGGTGCACCAGCTGATACAGCAGCT
GGGGATCGAAGTCTGT