mRNA_Ecto-sp9_F_contig1118.1014.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1118.1014.1
Unique NamemRNA_Ecto-sp9_F_contig1118.1014.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB1_ECTSI)

HSP 1 Score: 529 bits (1363), Expect = 5.550e-190
Identity = 263/265 (99.25%), Postives = 264/265 (99.62%), Query Frame = 1 
Query:    1 MWAKHSSPVMIRRAKRAAIFASPFVAVGLWAGYVLKERRKAPAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGEWGKPPKYVTEPPIIGKIVPASPAVQLVMSCLDMAGAADGAAVAEWKYPLAITPKDLENCEVPLKEGANFGEPHTVRVRQ 795
            MWAKHSSP+MIRRAKRAAIFASPFVAVGLWAGYVLKERRKAPAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFD RFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGEWGKPPKYVTEPPIIGKIVPASPAVQLVMSCLDMAGAADGAAVAEWKYPLAITPKDLENCEVPLKEGANFGEPHTVRVRQ
Sbjct:    1 MWAKHSSPMMIRRAKRAAIFASPFVAVGLWAGYVLKERRKAPAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDSRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGEWGKPPKYVTEPPIIGKIVPASPAVQLVMSCLDMAGAADGAAVAEWKYPLAITPKDLENCEVPLKEGANFGEPHTVRVRQ 265
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTL4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.370e-17
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1 
Query:   52 AIFASPFVAVGLWAGYVLKERRKA---PAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSV--FDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVK 471
            A+ A PFV++  W+G+V+  R +A   P    F  GS DDV+++ LKTGD++LF R    M P       +   V  +  +F+H G ++ +  G   V E TY+G+K R +  RIL S   +I+++P+  K ++E  A   + V+
Sbjct:    9 ALSALPFVSIAGWSGFVVMARSQAKNPPRGYNFITGSMDDVMSDTLKTGDLILFRRNCAYMQPMDGLGCFLTSQVDQWKSQFNHCGFILVNHVGDKFVVEETYSGVKCRPYSARILTSLSTDIVVVPLRVKRTKEMEAAAAQFVQ 153
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLF3_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 4.480e-16
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 1 
Query:   64 SPFVAVGLWAGYVLKERRKAPAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAK 453
            SPF+    ++ Y  +    +P  + F+I S D      L+TGD++ F R    + P    LS   + +  C FD  GV++ DR+GTPHV E +++GI L R+D RI  S   EI+L+P+  + S E++ K
Sbjct:   16 SPFMGWSFYSEY--QRNLHSPDSLEFNIASIDAQFMNTLRTGDIIFFRRNPFMLQPLQGILSWATKLLTGCDFDQCGVILNDRYGTPHVFEFSHSGITLTRYDHRIKLSMAEEIVLLPLIPESSSESKTK 143
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Aste57867_325 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7A3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.530e-16
Identity = 46/139 (33.09%), Postives = 75/139 (53.96%), Query Frame = 1 
Query:   52 AIFASPFVAVGLWAGYVLKERRKA---PAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSV--FDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAK 453
            A+ A PFV++  W G+   +R  A   P  + F+ GS DD++++ LKTGD++LF R    M P  AA   +   V  +  +++H G +  +  G   + E TY+G+K R +  RIL S   +I+++P+      E  AK
Sbjct:    9 ALTALPFVSIAGWTGFAAYQRTNANSPPRGLTFNTGSMDDIMSDTLKTGDLVLFRRNCAYMQPLDAASCFLTGKVESWKSQYNHCGFIFVNHIGDKFIVEETYSGVKCRPYSARILTSMSTDIVVVPLRRTKEMELAAK 147
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U754_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.520e-15
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:   52 AIFASPFVAVGLWAGYVLKERRKA---PAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSV--FDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVK 471
            A+ A PF  V  W G V+ +R  A   P    F+ GS DD++++ L+TGD++LF R    M PA A    +   V  +   ++H G +  +  G   V E TY+G+K R +  RI+ S   +I+++P+  K + E +  V   V+
Sbjct:    9 ALAALPFATVAGWTGMVMYKRESANHPPRGFTFNTGSMDDIMSDTLQTGDIVLFRRNCAFMQPADALSCFLADHVPSWQGPYNHCGFIYVNHIGDKFVVEETYSGVKCRPYSARIITSLSTDIVVVPLRVKRTPEMQNSVRDFVE 153
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6B1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.330e-15
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:   52 AIFASPFVAVGLWAGYVLKERRKA---PAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSV--FDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVK 471
            A+ A PF  V  W G V+ +R  A   P    F+ GS DD++++ L+TGD++LF R    M PA A    +   V  +   ++H G +  +  G   V E TY+G+K R +  RI+ S   +I+++P+  K + E +  V   V+
Sbjct:    9 ALAALPFATVAGWTGMVMYKRESANHPPRGFTFNTGSMDDIMSDTLQTGDIVLFRRNCAFMQPADALSCFLADHVPSWQGPYNHCGFIYVNHIGDKFVVEETYSGVKCRPYSARIITSLSTDIVVVPLRVKRTPEMQNSVRDFVE 153
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FI40_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.230e-14
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:   52 AIFASPFVAVGLWAGYVLKERRKAPAEVR---FSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVM--KRSVFDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEE----TRAKVERHV 468
            A+ A P  +V  W G V   R  A    R   F+ GS DD+L++ L+TGD++LF R    M PA A    +  +  ++   ++H G +  +  G   V E TY+G+K R +  RI+ S   +I ++P+  K + E     R  VE HV
Sbjct:    9 ALAALPLASVAGWTGVVAYTRESANHPARGYSFNTGSMDDILSDTLQTGDIVLFRRNCAYMQPADAVSCFLGDRVPIWQGPYNHCGFIYVNHIGDKFVVEETYSGVKCRPYSARIITSLSTDIAVVPLRVKRTPEMQMAVRDFVEEHV 156
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HD07_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.420e-13
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:   16 SSPVMIRRAKRAAIFASPFVA-VGLWAGYVLKERRKAPAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDCRFDHAGVVVADRFGTPHVAEVT-YTGIKLRRFDERILRSKCNEIMLIPVN 423
            SS V++R       +   F+A V + A  +   +R    E  F  GSADD++ + L++GDV+LFSR+W       A L   + + +   +DH+G++V  + GTP+V E T   G++ RRF+ERI  S  + I+++ +N
Sbjct:    3 SSSVLMRGVTNRVKYTVGFLATVSVHAAVIETRKRFVGIEPEFRQGSADDMVADSLRSGDVVLFSRKWYNYHLPTALLVKAQEAFYGGEYDHSGIIVM-KAGTPYVLETTPIRGVQCRRFEERIRHSASSHIVVLTLN 139
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Similar (to mitochondrial calcium-dependent solute carrier n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VD17_CYAM1)

HSP 1 Score: 73.9 bits (180), Expect = 3.340e-11
Identity = 46/150 (30.67%), Postives = 77/150 (51.33%), Query Frame = 1 
Query:  127 AEVRFSIGSAD------DVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGE 558
            ++VR S G  +        L   L  GD++LF+RR   M P GA +  + +++ + R+DH G+VV    G+ H+ E   +G+ LR  DERI RS+ NEI    ++   +E  R ++      L + E +  T + + LGA+ +    P +
Sbjct:   69 SQVRSSTGGTELKRERRVTLPPGLDAGDIVLFNRRCLAMAPLGALICAVAKAMSNSRWDHVGIVVRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIIRTERFRTEL------LHFAEQVLETPYKNDLGAMLVSVIHPAD 212
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKN1_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 1.450e-10
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:  178 LKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDCRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGE 558
            L  GD++LF+RR   M P GA +  + +++ + R+DH G+VV    G+ H+ E   +G+ LR  DERI RS+ NEI    ++   ++  R ++E       + E +  T + +  GA+ +    P +
Sbjct:   90 LDAGDIVLFNRRCLAMAPLGALICAVAKAMSNSRWDHVGIVVRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIVRTDRFRRELEH------FAEQVLETPYKNDFGAMLVSVIHPAD 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1118.1014.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized5.550e-19099.25protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.370e-1733.79protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Hypothetical4.480e-1635.38protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Aste57867_3254.530e-1633.09protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized4.520e-1532.41protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized6.330e-1532.41protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized3.230e-1433.11protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Hypothetical2.420e-1334.06protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Similar3.340e-1130.67to mitochondrial calcium-dependent solute carrier ... [more]
Uncharacterized1.450e-1030.71protein n=1 Tax=Cyanidiococcus yangmingshanensis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1118contigEcto-sp9_F_contig1118:17401..22133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score533.1
Seed ortholog evalue7.4e-149
Seed eggNOG ortholog2880.D8LIB1
EggNOG OGs2B8GN@1,2S0RR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_001480.1
Exons5
Model size798
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1118.1014.1prot_Ecto-sp9_F_contig1118.1014.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1118 17401..22133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928359.3970659-CDS-Ecto-sp9_F_contig1118:17400..177131622928359.3970659-CDS-Ecto-sp9_F_contig1118:17400..17713Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 17401..17713 -
1692277845.241687-CDS-Ecto-sp9_F_contig1118:17400..177131692277845.241687-CDS-Ecto-sp9_F_contig1118:17400..17713Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 17401..17713 -
1622928359.4072802-CDS-Ecto-sp9_F_contig1118:18360..184531622928359.4072802-CDS-Ecto-sp9_F_contig1118:18360..18453Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 18361..18453 -
1692277845.2521443-CDS-Ecto-sp9_F_contig1118:18360..184531692277845.2521443-CDS-Ecto-sp9_F_contig1118:18360..18453Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 18361..18453 -
1622928359.4172451-CDS-Ecto-sp9_F_contig1118:18694..188581622928359.4172451-CDS-Ecto-sp9_F_contig1118:18694..18858Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 18695..18858 -
1692277845.2677033-CDS-Ecto-sp9_F_contig1118:18694..188581692277845.2677033-CDS-Ecto-sp9_F_contig1118:18694..18858Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 18695..18858 -
1622928359.428066-CDS-Ecto-sp9_F_contig1118:19534..196051622928359.428066-CDS-Ecto-sp9_F_contig1118:19534..19605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 19535..19605 -
1692277845.277638-CDS-Ecto-sp9_F_contig1118:19534..196051692277845.277638-CDS-Ecto-sp9_F_contig1118:19534..19605Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 19535..19605 -
1622928359.4379663-CDS-Ecto-sp9_F_contig1118:21976..221331622928359.4379663-CDS-Ecto-sp9_F_contig1118:21976..22133Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 21977..22133 -
1692277845.286244-CDS-Ecto-sp9_F_contig1118:21976..221331692277845.286244-CDS-Ecto-sp9_F_contig1118:21976..22133Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1118 21977..22133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1118.1014.1

>prot_Ecto-sp9_F_contig1118.1014.1 ID=prot_Ecto-sp9_F_contig1118.1014.1|Name=mRNA_Ecto-sp9_F_contig1118.1014.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=266bp
MWAKHSSPVMIRRAKRAAIFASPFVAVGLWAGYVLKERRKAPAEVRFSIG
SADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDCRFDHAGVV
VADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRA
KVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGEWGKPPKYVTEPPII
GKIVPASPAVQLVMSCLDMAGAADGAAVAEWKYPLAITPKDLENCEVPLK
EGANFGEPHTVRVRQ*
back to top

mRNA from alignment at Ecto-sp9_F_contig1118:17401..22133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1118.1014.1 ID=mRNA_Ecto-sp9_F_contig1118.1014.1|Name=mRNA_Ecto-sp9_F_contig1118.1014.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4733bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1118:17401..22133- (Ectocarpus species9 EcSCA_722f female)
ATGTGGGCGAAGCACAGCAGCCCTGTGATGATCCGGCGCGCAAAGCGCGC
GGCGATTTTCGCCTCGCCTTTCGTCGCTGTGGGCTTGTGGGCTGGCTACG
TGCTCAAGGAGAGGCGGAAGGCGCCGGCTGAGGTTCGCTTTTCGATAGGC
TCTGCAGGTGTGTTTGTGTAGGCTATGTCGAGGACAGGTTGCAGGCACGC
GTGCTTTCGAGTGGTGCATCTTAAGCAGGCTGCCCGCAACAGCAGCCGTA
GAAGAGCGGAAACGACAACAACGCTGAATGCAATAGCAGTTGTTGTCGGA
TGGAATGTCATGATGTGTATGCTTACAACAGCAGCAGGTTTGTCGTGCGG
TGCATATACTGCTGCTGTGGCAAGCCGGCGTCATGACGCACCCTGCAAGA
GCGCGCCAGAGCCACTGTACGCTTTGTTCGAATCACTCTGCATGTGAACA
CCGCACCTGACGCACCACCTGCTGTGCACGTCTCGACATTCCTGCATGCT
CTTCGGGTTGCTGTTTGGGATGATCAAATAGAAGCGGATATTTTATTTTG
AACATGTCTGGGCAACTGCTGTACCGCCCGTACATAAGATATCTCCCCTG
TAAGATATCACTCCCCCACTCTCCCTGGAGCGATTTTCAAAGCTCGATTA
ACTCCATTGCAGAAAGAGCAGTGGCGGTGCCGAAAATGGCGGCGTTGGAA
CCATCTCGTGGAGACCTTTCCGAAAACGCATCGATTGATTTTTTCACAAC
CTCTCGTTCGTGGAGTATTTGTGGTGGAGCTTTGAAAATCGGTCTGAGCG
GGGGGTGGTATCTTGTGTCACCTACACGGCATCAACCTCTCTCTGTTGTT
GTTCCGCCGCTCCCTGCCGATGGCTGGTCAGTCGAGAGCGGTCGAGACTG
CTTCCTCTGCCGTTTTGCAGCTTCTCCGTGTATTTTATCAAGTGATACTT
GTTTCAGTAGTGTGTTATCGTCATGAGCGGGAGGCAACTGTCCATGCCAG
AGAGAGGGAGTTCAGCCCCCAGCACACAACTCACCTTATACAAGAGGGTC
CCCGTGCATCATCACGGTGCCCCGACTCCCTCGCAGTCTCCACCACCTGC
GTGACACAAACGCCGTTCGACAGACGTACAGGTATCCAACCAATGTCCGT
GAGCCCACGAACACCCTCCCTTGCTCTTCACGCTTGCGACTACCCATCAG
TGGGGTATTTGCACCCCGGATGTTGTTGCTGTTGTTGTTGTTTCGACGTT
GAAGAACCGCCCGGTTTCCGCTCAGTACCTTCTAATATCCGAAACTGGTC
CAACTGGTGCAGATGTCTACGCAGGATTTTATGAGTATCTAGAAAAAGAA
CAGGGAGGGGGCACGCAGACCCTATCCCTAACCCTAACCCTAACCCTAAC
CCTAACCCCAAAGCACGGATTGAATACTTTATCCCATCTGTTAGCTTATT
AATCAATTTTCCTGCGTAGACTAACGTCCGTGGTCGCAAGACGCCTACCC
AACGAGGGGTACCCCTTTCTTGAACGAAAAAGAAAAGAAAAGAAAAGGAA
GGATGCATGCATAAAAAACCACCAACACTGCAAGTGAGAGGAAAACCCGG
TACCAGCAGCAAGCGAAAGTCCTCCTGCAACAACCCCAGACAATACTATT
ACTCAAGGAGGCCTCAGGCCCCGGCTTCGTGATCTCCTCCATGGGACCGC
CTTTGGGCGGGAAATTATGGTGTTATGAGGAAATAGAACGGGGAGGGGGT
ACGCAGACCCTATTCCCTAACCCCAACCCTATCCCACCTCCCCCTGTTGC
ATGCTTTATCCAACATGTTTACGAAAGTGAAAAACTCTGCGAAGGGTACT
GCCTCCATGGTAACGTGACTTTTTTTGAGCCACAACAACTCACAGTAACA
AGCGGCAGTATGACAAATAGTTACCCCGGTTTGAATTGCTTTATGTTAGG
TAGCAGAGGTACGGACGGCGGATGAAATCGTGCACCGAGAGGAAAACGTT
CGTGGTATTTTTTCGTTGTCCAATCCGATCCCTTCTAGACGGTGAGTGCC
ACCGCCGTCGTCGAAGTCGCTCTTGCTCTTCTGCTCGCATGCTCTATCGT
TTGTTTGTTCTCCTGTGCACTGGTCAGAAGAACGAATTGTCCGTACCTTT
GTCCTAGATGGTGCTGCCTACACCAGCAGTGCGACCACCATCGAGATACA
ATACGTGCACCACCCGTGTCTCACTTCTTCTTAGTGCAGTCGGGGTCCCT
CTTTGTATGTGCCAAGCGCTTTCACCCTGACTATTGCGGGCACCCGCAAT
ACTCAATGCATTATCCATCTCAATTATTTAATCTGTGCCAACCAATTGCA
CCCGCACTCCTATATATATCACTAGAGGGCCCCCGACCGTATGTTGGAAC
AGAGAACCACTGTAAGTACGACCGGTGTAGTCATCCACCCGTCGTGTAAC
CGTCACCGCGGGTGACTCGATCGTGCTCGGCGTCGTTGGCTTCGCGTGTC
TTTCGAATGGCCGCTGTTTGTCGAACAGATGACGTGCTGACGGAGCAGCT
CAAGACTGGGGACGTCCTGCTCTTCAGCCGAAGATGGACACAGATGCTGG
TGAGACGAAACGGATTATCTAACGAGGTGGGCCTCTCTGTGTTTGATGTG
GACTCTTCGCGCGAGCCGGCTCTTAACTACCCGTGCGTGTCGCAATATGT
TCACTGGATTGTGTGGCGTACTCTCACCGTGGATTTTCATTCGGCGCGTG
TTGCTTTTTTGTGTCCAAGTGCGTTTTGACGTGTTTTCCACAAGAGCAGT
TTGTTTATTTGTTTTCCGAGAAGGGGCGGTTCGAATGCGGTTTGGCGCGA
ACTGGTGTCGTTCGTTGTCGCCGAGGTTGCCAGGTTGCTTCCGCACGACT
CACCCAAACGAGAACGGCATGCAGCGGCTCATCCACCCACCCAAGCCTCC
AGACCCGGCCGACGGGGAGTTATAGTTGCTGCTGCTGTTTGTTGTTGTTG
TTGTTGTTGTCGTTGTTGTCGTTACTGTGGGTGGTGGTAGTAGTGGTGGT
GTCGTTGTTGCTTTTGTTGCTTTTGTTTGTTGCAATGTTATTGTTGTTGG
TGATGGTGGTGGTGGTGTTCCTGTCTGCACATGAAAGACCCAACGTGCTG
ACTTGTGGTCCATACGTTCCTCCACAAAACCCCCTTGCCTGCGTACGGTT
GGTGCATGCGCGTGTGTTTCTTACTACCCTTGCTTTTCTCCCCCGGTTTT
TTCCCCGTCGGTGCCGTGCGCGCAGCCCGCAGGGGCGGCGTTGAGCGTGA
TGAAGCGTAGCGTGTTCGATTGTCGCTTCGACCACGCTGGGGTGGTGGTG
GCGGATCGATTCGGGACGCCGCACGTCGCAGAGGTGACCTATACGGGGAT
CAAGCTCCGGCGGTTTGATGAGCGGATACTCCGATCAAAGTGAGCGCGAA
GGATTTTTTTCTGACCTGGCCACTACATAGAGAGCTTAGAATAAAGAAAC
GTCGATGCACGGGTAGTTCTTCCCATGGTCGCATTTTGTCTTGAGAAAAT
ACGTTCGAGCTCACGCTTAATATTTGAAAATATTGCTCACTCATAGAGTA
CGAAGCTAACGTCAGAACCAACACATCGTCCCGCGCGTGTTGTTTGTTCC
CGTCGACCGTTTCTCTCTAACTCGCGGAAGGTGCAACGAGATCATGTTGA
TCCCCGTCAACTTCAAGTGCAGCGAGGAGACTCGAGCCAAGGTGGAACGA
CACGTCAAGGGGCTCACGTACAGGTATGCAAAGACAGATAATCAGGTCAG
TCCAGCTCGGAAAAACAGGCCCGTTGTTGTCGCGCTGTGACCACGCGCCG
TTTCACCGCAGGCATCCGTGGGACAGGTCCTTTGCGACTTCCCCCACCCC
GGCAGCACCTCCCGAACGAGTTTTTCTTTTTTTTTAACGTGTGACTGCTG
GTTGACACCTTGCTCTAGGGCCCGCAGCTCGTACGCTGTACTGCTGTGCG
GCTGTGGCGGGCTAAAGCGGTCGTGCGCTGCTGCTGTGCGGCTGTTTGCG
GCGCAGGCTAAAGCGGAAGGTGGCTTTGGGACCTTGCCCCGGTTAGAGAG
GGCTTGTCGAATCCGGAATCAAACCCAGTTCTCAGCCCTACTGGGAGTTG
TACAAATAGGTTGAAGCGCTTCGCTTTTTTGTGACCAACGGGAGGTGGTC
CTCGGCAAACAAAAGTGAGGTATCGCATTTTTTCGTCGGGCCGGTTTTCG
CCCGAAAACGGGCCGTTCTTTCATCATGCGTTTTTTCGTGGTTGGTCCAA
ACTTTGTCGTCTATAATTAATCCGCCGACGCCCGAACCCCTTTTCGCCCC
TGAAAATGTAGCGCGTTATCCAACGTCCTGACTTACCCCCCTCACCATAA
CCAACAACCAACCAACGCAGAGAGCCGATCGCGAACACGCTCTGGATAGA
CCTTCTCGGCGCTCTAAAGCTCAAGACCACGAAGCCGGGGGAGTGGGGCA
AGCCCCCCAAGTACGTCACGGAGCCCCCGATCATCGGCAAGATCGTACCC
GCGAGCCCCGCCGTCCAGCTGGTGATGTCGTGTCTGGACATGGCGGGAGC
GGCGGACGGGGCGGCCGTGGCAGAGTGGAAGTACCCCCTCGCCATAACGC
CGAAAGACTTGGAGAACTGCGAGGTGCCTCTGAAGGAGGGGGCCAACTTT
GGGGAGCCCCACACCGTTCGTGTTAGGCAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1118:17401..22133-

>mRNA_Ecto-sp9_F_contig1118.1014.1 ID=mRNA_Ecto-sp9_F_contig1118.1014.1|Name=mRNA_Ecto-sp9_F_contig1118.1014.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1596bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1118:17401..22133- (Ectocarpus species9 EcSCA_722f female)
ATGTGGGCGAAGCACAGCAGCCCTGTGATGATCCGGCGCGCAAAGCGCGC
GGCGATTTTCGCCTCGCCTTTCGTCGCTGTGGGCTTGTGGGCTGGCTACG
TGCTCAAGGAGAGGCGGAAGGCGCCGGCTGAGGTTCGCTTTTCGATAGGC
TCTGCAGATGTGGGCGAAGCACAGCAGCCCTGTGATGATCCGGCGCGCAA
AGCGCGCGGCGATTTTCGCCTCGCCTTTCGTCGCTGTGGGCTTGTGGGCT
GGCTACGTGCTCAAGGAGAGGCGGAAGGCGCCGGCTGAGGTTCGCTTTTC
GATAGGCTCTGCAGATGACGTGCTGACGGAGCAGCTCAAGACTGGGGACG
TCCTGCTCTTCAGCCGAAGATGGACACAGATGCTGATGACGTGCTGACGG
AGCAGCTCAAGACTGGGGACGTCCTGCTCTTCAGCCGAAGATGGACACAG
ATGCTGCCCGCAGGGGCGGCGTTGAGCGTGATGAAGCGTAGCGTGTTCGA
TTGTCGCTTCGACCACGCTGGGGTGGTGGTGGCGGATCGATTCGGGACGC
CGCACGTCGCAGAGGTGACCTATACGGGGATCAAGCTCCGGCGGTTTGAT
GAGCGGATACTCCGATCAAACCCGCAGGGGCGGCGTTGAGCGTGATGAAG
CGTAGCGTGTTCGATTGTCGCTTCGACCACGCTGGGGTGGTGGTGGCGGA
TCGATTCGGGACGCCGCACGTCGCAGAGGTGACCTATACGGGGATCAAGC
TCCGGCGGTTTGATGAGCGGATACTCCGATCAAAGTGCAACGAGATCATG
TTGATCCCCGTCAACTTCAAGTGCAGCGAGGAGACTCGAGCCAAGGTGGA
ACGACACGTCAAGGGGCTCACGTACAGGTGCAACGAGATCATGTTGATCC
CCGTCAACTTCAAGTGCAGCGAGGAGACTCGAGCCAAGGTGGAACGACAC
GTCAAGGGGCTCACGTACAGAGAGCCGATCGCGAACACGCTCTGGATAGA
CCTTCTCGGCGCTCTAAAGCTCAAGACCACGAAGCCGGGGGAGTGGGGCA
AGCCCCCCAAGTACGTCACGGAGCCCCCGATCATCGGCAAGATCGTACCC
GCGAGCCCCGCCGTCCAGCTGGTGATGTCGTGTCTGGACATGGCGGGAGC
GGCGGACGGGGCGGCCGTGGCAGAGTGGAAGTACCCCCTCGCCATAACGC
CGAAAGACTTGGAGAACTGCGAGGTGCCTCTGAAGGAGGGGGCCAACTTT
GGGGAGCCCCACACCGTTCGTGTTAGGCAATAGAGAGCCGATCGCGAACA
CGCTCTGGATAGACCTTCTCGGCGCTCTAAAGCTCAAGACCACGAAGCCG
GGGGAGTGGGGCAAGCCCCCCAAGTACGTCACGGAGCCCCCGATCATCGG
CAAGATCGTACCCGCGAGCCCCGCCGTCCAGCTGGTGATGTCGTGTCTGG
ACATGGCGGGAGCGGCGGACGGGGCGGCCGTGGCAGAGTGGAAGTACCCC
CTCGCCATAACGCCGAAAGACTTGGAGAACTGCGAGGTGCCTCTGAAGGA
GGGGGCCAACTTTGGGGAGCCCCACACCGTTCGTGTTAGGCAATAG
back to top