mRNA_Ecto-sp9_F_contig1117.1005.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP (family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ49_ECTSI) HSP 1 Score: 171 bits (432), Expect = 9.260e-48 Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 2
Query: 2 VVVSIFEAGQAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
VVVSIFE GQAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLL AYNDG TWERMLLL+VSV MGLGMHLLVGICINNISPRRGYPAFW
Sbjct: 510 VVVSIFEEGQAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLSAYNDGATWERMLLLVVSVAMGLGMHLLVGICINNISPRRGYPAFW 600
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WQ38_9CHLO) HSP 1 Score: 55.1 bits (131), Expect = 7.680e-7 Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVL-LGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
W+ ++ A M LT SVHP AG L + L D ++ ++++V+ G M +L+G+ INNISP+R YP+FW
Sbjct: 81 WIAGPLATAVAAALMQLTRSVHPSAGGTALAIGLAPLGPWDGFQ----VVITVIFGSIMFILLGLIINNISPKRSYPSFW 156
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP-domain-containing (protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7QKA5_GLOTA) HSP 1 Score: 54.7 bits (130), Expect = 3.060e-6 Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*KTREIVFCSVKTNSS 322
WL S+SVA+ I+ M +TG+ HPPAGA L+ A + D +E L +++ + L+V + ++NI +R YP FW E V V + S
Sbjct: 131 WLAGSLSVATAIVIMQITGTTHPPAGATALL---AAVNADVYEIGWYYLPVILLSSTLILVVALLVDNI--QRRYPLFWFSPAEAVPAKVSADLS 220
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232LSL5_9EURO) HSP 1 Score: 52.8 bits (125), Expect = 1.650e-5 Identity = 33/111 (29.73%), Postives = 54/111 (48.65%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*KTREIVFCSVKTNSSLS*TWRKLKPTLSPPI 370
W+ S++ A+ M+LT +VHPPAGA L+ A D + E L+ V +G + + + +NNI +R YP +W ++ C S S W + + T P+
Sbjct: 168 WIGGSLACAAATAVMTLTKTVHPPAGATALL---AVVDDSSLEMGWFLIPVVQLGCILMICTALFLNNI--QRRYPIYWWTAEDLGKCGWSNTKSFSDVWPESETTGEYPV 273
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1J5D160_9DELT) HSP 1 Score: 50.8 bits (120), Expect = 3.820e-5 Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGA----YNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
WL SV+VA+ I+ M T ++HPP GA L+ + N G + ++ V +G+ + L+V + +NNI R YP FW
Sbjct: 100 WLASSVAVATSIVAMHATKTLHPPGGATALIAVTGSQKIINLGYLYA-----VIPVGLGVAIMLIVALLVNNIPKSRRYPEFW 177
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP (family protein n=1 Tax=Spirosoma spitsbergense TaxID=431554 RepID=UPI0003754DE9) HSP 1 Score: 51.2 bits (121), Expect = 4.020e-5 Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERML---LLLVSVVMGLGMHLLVGICINNISPRRGYPA 268
WL +++V+ I+GM +T ++HPPAGA L+ N G + L +L V+MG+ + L++ + +NNI P R YP+
Sbjct: 106 WLSAALAVSLSIVGMQITKTMHPPAGATALIA----NIGSDKIKALGFYYVLTPVLMGVVILLVMALIVNNIPPNRSYPS 181
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4GII4_9APHY) HSP 1 Score: 51.2 bits (121), Expect = 4.760e-5 Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*K 280
WL S+S A+ I+ M +TG+ HPPAG+ L L A +D W L +++ + L + +NNI +R YP +W K
Sbjct: 121 WLAASISTATAIVAMQITGTTHPPAGSTAL--LPAIDD-TVWAMSWYYLPVILLSCAIFLFIACIVNNI--QRRYPMYWFK 196
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP-domain-containing (protein (Fragment) n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1R7A2_9AGAM) HSP 1 Score: 50.8 bits (120), Expect = 5.210e-5 Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 2
Query: 38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDT---WERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
WL S+S A+ I+ M +TG+ HPPAGA L L + ++ T W + ++L+S + L + LLV NNI +R YPA W
Sbjct: 116 WLSASISCATAIVAMQITGTTHPPAGATAL--LPSVDESFTELGWYYIAVVLLSSALALAVALLV----NNI--QRRYPAHW 189
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X7N2_9AGAR) HSP 1 Score: 50.8 bits (120), Expect = 6.580e-5 Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 2
Query: 29 QAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDT---WERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
Q +WL S+S A+ I+ M +TG+ HPPAGA L L A ND W + ++L+S + V + INNI +R YP FW
Sbjct: 136 QLLWLTGSISCATAIVVMQITGTTHPPAGATAL--LAAVNDQIRDIGWYYLPVILLSSTLACA----VALVINNI--QRRYPVFW 212
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=7 Tax=Monosporascus TaxID=155415 RepID=A0A4Q4TZM6_9PEZI) HSP 1 Score: 50.8 bits (120), Expect = 7.870e-5 Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 2
Query: 2 VVVSIFEAG----QAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*KTREI 292
V+ +FE G W+ S+S AS + M+LTG+VHPPAGA L+ A D + LL V++G + V + +NNI +R +P +W E+
Sbjct: 124 VISKLFELGPQSHHLTWVAGSLSCASAVAVMALTGTVHPPAGATALL---AVADQHIAQLGWFLLPVVILGCLLMQCVALLLNNI--QRRFPNYWWTPEEV 219 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1117.1005.1 >prot_Ecto-sp9_F_contig1117.1005.1 ID=prot_Ecto-sp9_F_contig1117.1005.1|Name=mRNA_Ecto-sp9_F_contig1117.1005.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp GGGEHIRSGTGGVAAKVRFCSLGDPRHVPHRERASSCGRALPGSLGRVQRback to top mRNA from alignment at Ecto-sp9_F_contig1117:648..1205+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1117.1005.1 ID=mRNA_Ecto-sp9_F_contig1117.1005.1|Name=mRNA_Ecto-sp9_F_contig1117.1005.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1117:648..1205+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1117:648..1205+ >mRNA_Ecto-sp9_F_contig1117.1005.1 ID=mRNA_Ecto-sp9_F_contig1117.1005.1|Name=mRNA_Ecto-sp9_F_contig1117.1005.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1117:648..1205+ (Ectocarpus species9 EcSCA_722f female)back to top |