mRNA_Ecto-sp9_F_contig1117.1005.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1117.1005.1
Unique NamemRNA_Ecto-sp9_F_contig1117.1005.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP (family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ49_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 9.260e-48
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 2
Query:    2 VVVSIFEAGQAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
            VVVSIFE GQAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLL AYNDG TWERMLLL+VSV MGLGMHLLVGICINNISPRRGYPAFW
Sbjct:  510 VVVSIFEEGQAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLSAYNDGATWERMLLLVVSVAMGLGMHLLVGICINNISPRRGYPAFW 600          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WQ38_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 7.680e-7
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVL-LGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
            W+   ++ A     M LT SVHP AG   L + L      D ++    ++++V+ G  M +L+G+ INNISP+R YP+FW
Sbjct:   81 WIAGPLATAVAAALMQLTRSVHPSAGGTALAIGLAPLGPWDGFQ----VVITVIFGSIMFILLGLIINNISPKRSYPSFW 156          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP-domain-containing (protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7QKA5_GLOTA)

HSP 1 Score: 54.7 bits (130), Expect = 3.060e-6
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*KTREIVFCSVKTNSS 322
            WL  S+SVA+ I+ M +TG+ HPPAGA  L+   A  + D +E     L  +++   + L+V + ++NI  +R YP FW    E V   V  + S
Sbjct:  131 WLAGSLSVATAIVIMQITGTTHPPAGATALL---AAVNADVYEIGWYYLPVILLSSTLILVVALLVDNI--QRRYPLFWFSPAEAVPAKVSADLS 220          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232LSL5_9EURO)

HSP 1 Score: 52.8 bits (125), Expect = 1.650e-5
Identity = 33/111 (29.73%), Postives = 54/111 (48.65%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*KTREIVFCSVKTNSSLS*TWRKLKPTLSPPI 370
            W+  S++ A+    M+LT +VHPPAGA  L+   A  D  + E    L+  V +G  + +   + +NNI  +R YP +W    ++  C      S S  W + + T   P+
Sbjct:  168 WIGGSLACAAATAVMTLTKTVHPPAGATALL---AVVDDSSLEMGWFLIPVVQLGCILMICTALFLNNI--QRRYPIYWWTAEDLGKCGWSNTKSFSDVWPESETTGEYPV 273          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1J5D160_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 3.820e-5
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGA----YNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
            WL  SV+VA+ I+ M  T ++HPP GA  L+ +       N G  +      ++ V +G+ + L+V + +NNI   R YP FW
Sbjct:  100 WLASSVAVATSIVAMHATKTLHPPGGATALIAVTGSQKIINLGYLYA-----VIPVGLGVAIMLIVALLVNNIPKSRRYPEFW 177          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP (family protein n=1 Tax=Spirosoma spitsbergense TaxID=431554 RepID=UPI0003754DE9)

HSP 1 Score: 51.2 bits (121), Expect = 4.020e-5
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERML---LLLVSVVMGLGMHLLVGICINNISPRRGYPA 268
            WL  +++V+  I+GM +T ++HPPAGA  L+     N G    + L    +L  V+MG+ + L++ + +NNI P R YP+
Sbjct:  106 WLSAALAVSLSIVGMQITKTMHPPAGATALIA----NIGSDKIKALGFYYVLTPVLMGVVILLVMALIVNNIPPNRSYPS 181          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4GII4_9APHY)

HSP 1 Score: 51.2 bits (121), Expect = 4.760e-5
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*K 280
            WL  S+S A+ I+ M +TG+ HPPAG+  L  L A +D   W      L  +++   + L +   +NNI  +R YP +W K
Sbjct:  121 WLAASISTATAIVAMQITGTTHPPAGSTAL--LPAIDD-TVWAMSWYYLPVILLSCAIFLFIACIVNNI--QRRYPMYWFK 196          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: HPP-domain-containing (protein (Fragment) n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1R7A2_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 5.210e-5
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 2
Query:   38 WLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDT---WERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
            WL  S+S A+ I+ M +TG+ HPPAGA  L  L + ++  T   W  + ++L+S  + L + LLV    NNI  +R YPA W
Sbjct:  116 WLSASISCATAIVAMQITGTTHPPAGATAL--LPSVDESFTELGWYYIAVVLLSSALALAVALLV----NNI--QRRYPAHW 189          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X7N2_9AGAR)

HSP 1 Score: 50.8 bits (120), Expect = 6.580e-5
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 2
Query:   29 QAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDT---WERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW 274
            Q +WL  S+S A+ I+ M +TG+ HPPAGA  L  L A ND      W  + ++L+S  +       V + INNI  +R YP FW
Sbjct:  136 QLLWLTGSISCATAIVVMQITGTTHPPAGATAL--LAAVNDQIRDIGWYYLPVILLSSTLACA----VALVINNI--QRRYPVFW 212          
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Match: Uncharacterized (protein n=7 Tax=Monosporascus TaxID=155415 RepID=A0A4Q4TZM6_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 7.870e-5
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 2
Query:    2 VVVSIFEAG----QAVWLQKSVSVASVILGMSLTGSVHPPAGALCLVLLGAYNDGDTWERMLLLLVSVVMGLGMHLLVGICINNISPRRGYPAFW*KTREI 292
            V+  +FE G       W+  S+S AS +  M+LTG+VHPPAGA  L+   A  D    +    LL  V++G  +   V + +NNI  +R +P +W    E+
Sbjct:  124 VISKLFELGPQSHHLTWVAGSLSCASAVAVMALTGTVHPPAGATALL---AVADQHIAQLGWFLLPVVILGCLLMQCVALLLNNI--QRRFPNYWWTPEEV 219          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1117.1005.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
HPP9.260e-4894.51family protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized7.680e-737.50protein n=1 Tax=Chlamydomonas eustigma TaxID=11579... [more]
HPP-domain-containing3.060e-635.79protein n=1 Tax=Gloeophyllum trabeum (strain ATCC ... [more]
Uncharacterized1.650e-529.73protein n=1 Tax=Elaphomyces granulatus TaxID=51996... [more]
Uncharacterized3.820e-534.94protein n=2 Tax=unclassified Deltaproteobacteria T... [more]
HPP4.020e-536.25family protein n=1 Tax=Spirosoma spitsbergense Tax... [more]
Uncharacterized4.760e-535.80protein n=1 Tax=Fibroporia radiculosa TaxID=599839... [more]
HPP-domain-containing5.210e-540.24protein (Fragment) n=1 Tax=Dentipellis sp. KUC8613... [more]
Uncharacterized6.580e-540.00protein n=1 Tax=Gymnopilus dilepis TaxID=231916 Re... [more]
Uncharacterized7.870e-534.65protein n=7 Tax=Monosporascus TaxID=155415 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1117contigEcto-sp9_F_contig1117:648..1205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHPP family protein
Ec32 orthologEc-26_006150.4
Exons2
Model size391
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928357.4141223-CDS-Ecto-sp9_F_contig1117:647..8161622928357.4141223-CDS-Ecto-sp9_F_contig1117:647..816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1117 648..816 +
1692277844.714881-CDS-Ecto-sp9_F_contig1117:647..8161692277844.714881-CDS-Ecto-sp9_F_contig1117:647..816Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1117 648..816 +
1622928357.4275281-CDS-Ecto-sp9_F_contig1117:985..12031622928357.4275281-CDS-Ecto-sp9_F_contig1117:985..1203Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1117 986..1203 +
1692277844.725237-CDS-Ecto-sp9_F_contig1117:985..12031692277844.725237-CDS-Ecto-sp9_F_contig1117:985..1203Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1117 986..1203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1117.1005.1prot_Ecto-sp9_F_contig1117.1005.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1117 648..1203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1117.1005.1

>prot_Ecto-sp9_F_contig1117.1005.1 ID=prot_Ecto-sp9_F_contig1117.1005.1|Name=mRNA_Ecto-sp9_F_contig1117.1005.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp
GGGEHIRSGTGGVAAKVRFCSLGDPRHVPHRERASSCGRALPGSLGRVQR
WRHVGEDAAAAGVGGHGTRDAPAGRDLHQQHLAQTGISCLLVKNEGDCFL
QRQDQLLSLLNLAEIETNSLSPYFFYFWQ
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mRNA from alignment at Ecto-sp9_F_contig1117:648..1205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1117.1005.1 ID=mRNA_Ecto-sp9_F_contig1117.1005.1|Name=mRNA_Ecto-sp9_F_contig1117.1005.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1117:648..1205+ (Ectocarpus species9 EcSCA_722f female)
GGTGGTGGTGAGCATATTCGAAGCGGGACAGGCGGTGTGGCTGCAAAAGT CCGTTTCTGTAGCCTCGGTGATCCTCGGCATGTCCCTCACCGGGAGCGTG CATCCTCCTGCGGGCGCGCTTTGCCTGGTTCTCTTGGGCGCGTACAACGA TGGAGACACGTGGGAGAGGGTGAGCTCAACCTGACCGTTATGGAATTCTA CGATATACCAAAAGCATAGATAGACACGTTGAATCATGTTCCCGCGGTCA GCACGACCTACCCCTCCACCACCCGACACGCCTCGCCGATTGTTCTTGAC CTTGACCGCCACCCTGTCTGTGGCGATGCCTACGCTAGATGCTGCTGCTG CTGGTGTCGGTGGTCATGGGACTAGGGATGCACCTGCTGGTCGGGATCTG CATCAACAACATCTCGCCCAGACGGGGATATCCTGCCTTTTGGTGAAAAA CGAGGGAGATTGTTTTTTGCAGCGTCAAGACCAACTCCTCTCTCTCCTGA ACCTGGCGGAAATTGAAACCAACTCTCTCTCCCCCTATTTTTTTTACTTT TGGCAACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1117:648..1205+

>mRNA_Ecto-sp9_F_contig1117.1005.1 ID=mRNA_Ecto-sp9_F_contig1117.1005.1|Name=mRNA_Ecto-sp9_F_contig1117.1005.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1117:648..1205+ (Ectocarpus species9 EcSCA_722f female)
GGTGGTGGTGAGCATATTCGAAGCGGGACAGGCGGTGTGGCTGCAAAAGT
CCGTTTCTGTAGCCTCGGTGATCCTCGGCATGTCCCTCACCGGGAGCGTG
CATCCTCCTGCGGGCGCGCTTTGCCTGGTTCTCTTGGGCGCGTACAACGA
TGGAGACACGTGGGAGAGGGGTGGTGGTGAGCATATTCGAAGCGGGACAG
GCGGTGTGGCTGCAAAAGTCCGTTTCTGTAGCCTCGGTGATCCTCGGCAT
GTCCCTCACCGGGAGCGTGCATCCTCCTGCGGGCGCGCTTTGCCTGGTTC
TCTTGGGCGCGTACAACGATGGAGACACGTGGGAGAGGATGCTGCTGCTG
CTGGTGTCGGTGGTCATGGGACTAGGGATGCACCTGCTGGTCGGGATCTG
CATCAACAACATCTCGCCCAGACGGGGATATCCTGCCTTTTGGTGAAAAA
CGAGGGAGATTGTTTTTTGCAGCGTCAAGACCAACTCCTCTCTCTCCTGA
ACCTGGCGGAAATTGAAACCAACTCTCTCTCCCCCTATTTTTTTTACTTT
TGGCAAATGCTGCTGCTGCTGGTGTCGGTGGTCATGGGACTAGGGATGCA
CCTGCTGGTCGGGATCTGCATCAACAACATCTCGCCCAGACGGGGATATC
CTGCCTTTTGGTGAAAAACGAGGGAGATTGTTTTTTGCAGCGTCAAGACC
AACTCCTCTCTCTCCTGAACCTGGCGGAAATTGAAACCAACTCTCTCTCC
CCCTATTTTTTTTACTTTTGGCAA
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