mRNA_Ecto-sp9_F_contig11163.1003.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11163.1003.1
Unique NamemRNA_Ecto-sp9_F_contig11163.1003.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11163.1003.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY0_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.560e-100
Identity = 151/158 (95.57%), Postives = 152/158 (96.20%), Query Frame = 1 
Query:   16 SAVQAGAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPTPSYQGYVQDAQQQQFGQQAYAQQWAGYATAVPQPQPVAPQAYPAQAPHLQGQPYLPTPEIAQPPVPAQAPGIAAPL 489
            SAVQAGAQISYAAAPPG TGGGPNG+MP GAPAFYQDPYSSFSQYG AQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPP PSYQGYVQDAQQQQFGQQAYAQQW GYATAVPQPQPVAPQAYPAQAPHLQGQPYLPTPEIAQ PVPAQAPGIAAPL
Sbjct:   37 SAVQAGAQISYAAAPPGATGGGPNGVMPSGAPAFYQDPYSSFSQYGGAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPAPSYQGYVQDAQQQQFGQQAYAQQWPGYATAVPQPQPVAPQAYPAQAPHLQGQPYLPTPEIAQAPVPAQAPGIAAPL 194
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BLAST of mRNA_Ecto-sp9_F_contig11163.1003.1 vs.
Match: PCI (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q3_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 1.780e-94
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1 
Query:   16 SAVQAGAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPTPSYQGYVQDAQQQQFGQQAYAQQWAGYATAVPQPQPVAPQAYPAQAPHLQGQPYLPTPEIAQPPVPAQAPG 474
            SAVQAGAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPP PSYQGYVQDAQQQQFGQQAYAQQWAGYATAVPQPQPVAPQAYPAQAP+LQGQPYLPTPEIAQPPVPAQAPG
Sbjct:   37 SAVQAGAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPAPSYQGYVQDAQQQQFGQQAYAQQWAGYATAVPQPQPVAPQAYPAQAPYLQGQPYLPTPEIAQPPVPAQAPG 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11163.1003.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.560e-10095.57protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
PCI1.780e-9498.69domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11163contigEcto-sp9_F_contig11163:96..1111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue2.9e-79
Seed eggNOG ortholog2880.D7G4Q3
Preferred nameLENG8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928357.3212352-CDS-Ecto-sp9_F_contig11163:95..4041622928357.3212352-CDS-Ecto-sp9_F_contig11163:95..404Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11163 96..404 -
1692277844.6667917-CDS-Ecto-sp9_F_contig11163:95..4041692277844.6667917-CDS-Ecto-sp9_F_contig11163:95..404Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11163 96..404 -
1622928357.3329952-CDS-Ecto-sp9_F_contig11163:931..11111622928357.3329952-CDS-Ecto-sp9_F_contig11163:931..1111Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11163 932..1111 -
1692277844.679825-CDS-Ecto-sp9_F_contig11163:931..11111692277844.679825-CDS-Ecto-sp9_F_contig11163:931..1111Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11163 932..1111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11163.1003.1prot_Ecto-sp9_F_contig11163.1003.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11163 96..1111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11163.1003.1

>prot_Ecto-sp9_F_contig11163.1003.1 ID=prot_Ecto-sp9_F_contig11163.1003.1|Name=mRNA_Ecto-sp9_F_contig11163.1003.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=163bp
DPPTPSAVQAGAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQY
GAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYPPTPSYQGYVQDAQQQ
QFGQQAYAQQWAGYATAVPQPQPVAPQAYPAQAPHLQGQPYLPTPEIAQP
PVPAQAPGIAAPL
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mRNA from alignment at Ecto-sp9_F_contig11163:96..1111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11163.1003.1 ID=mRNA_Ecto-sp9_F_contig11163.1003.1|Name=mRNA_Ecto-sp9_F_contig11163.1003.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1016bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11163:96..1111- (Ectocarpus species9 EcSCA_722f female)
GACCCTCCCACGCCCTCTGCTGTTCAAGCGGGAGCTCAGATCAGCTATGC
CGCGGCACCTCCTGGCCCGACTGGCGGAGGTCCAAATGGCATCATGCCTC
CGGGCGCGCCGGCTTTCTACCAGGATCCGTACAGTTCTTTCTCCCAGTAT
GGTGCTGCACAGCAATATGCAGATCCTCAGGTACGAATAGAAAACACTGG
GAGCTTGGTAGCTGTATGTATCCCTTGAAGGTATTCGATGCGCGCCCCAT
CTCTCGTGCTCTTCCTACTGGCTCTGTTGCGATCACGTGCGGAATATGTA
CTGCTGTACAGCAGTACTCGCATGGTTGCGAATTCATCCTCATGTGTAGC
GTTAGTTTGTATTATTAATCCTGCCGGCACACGAGCGTGTGTGTCATGTA
AATTGACCGTGGCCGGTAGGCCGGGACACGCATAATATGATACCTACAGC
CTAGCAGTGACCTGTGCTTGTCGAGGTTGTTTTTGAAGATTCAGCTCTAT
TGGAGCTTTCCCTCCCTCGATCACATCGCAGTGGAAGCCATCTTCGAGCA
TATGGAGCGCATGTTTGCGTTAAACTGCAAGCCGTCCTCTAGTTCGCCCA
CGTGCTGCGACCTTTTTATTCTGGCGGAAGGGTTTTGTGGCAAGTCGATC
TGATTTTGCCTACAATGCAGCATTTCCCCTACTCCGCCCTACTGCATGAT
TACCCAGGCTTCTCAGTGGGCGGGCTACTACCCAGGGTATAACTACAACA
ACGGCCATCCTCAGCAGTACCAGGCGTACCCGCCAACCCCAAGCTATCAG
GGGTACGTCCAAGATGCGCAGCAGCAGCAATTTGGGCAACAGGCTTATGC
CCAGCAGTGGGCAGGGTATGCAACTGCTGTACCTCAACCTCAGCCGGTTG
CTCCTCAAGCGTACCCAGCCCAGGCCCCTCACCTGCAAGGTCAACCATAT
CTGCCGACCCCCGAGATAGCGCAGCCGCCAGTACCGGCACAAGCACCAGG
TATTGCGGCACCGTTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11163:96..1111-

>mRNA_Ecto-sp9_F_contig11163.1003.1 ID=mRNA_Ecto-sp9_F_contig11163.1003.1|Name=mRNA_Ecto-sp9_F_contig11163.1003.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11163:96..1111- (Ectocarpus species9 EcSCA_722f female)
GACCCTCCCACGCCCTCTGCTGTTCAAGCGGGAGCTCAGATCAGCTATGC
CGCGGCACCTCCTGGCCCGACTGGCGGAGGTCCAAATGGCATCATGCCTC
CGGGCGCGCCGGCTTTCTACCAGGATCCGTACAGTTCTTTCTCCCAGTAT
GGTGCTGCACAGCAATATGCAGATCCTCAGGACCCTCCCACGCCCTCTGC
TGTTCAAGCGGGAGCTCAGATCAGCTATGCCGCGGCACCTCCTGGCCCGA
CTGGCGGAGGTCCAAATGGCATCATGCCTCCGGGCGCGCCGGCTTTCTAC
CAGGATCCGTACAGTTCTTTCTCCCAGTATGGTGCTGCACAGCAATATGC
AGATCCTCAGGCTTCTCAGTGGGCGGGCTACTACCCAGGGTATAACTACA
ACAACGGCCATCCTCAGCAGTACCAGGCGTACCCGCCAACCCCAAGCTAT
CAGGGGTACGTCCAAGATGCGCAGCAGCAGCAATTTGGGCAACAGGCTTA
TGCCCAGCAGTGGGCAGGGTATGCAACTGCTGTACCTCAACCTCAGCCGG
TTGCTCCTCAAGCGTACCCAGCCCAGGCCCCTCACCTGCAAGGTCAACCA
TATCTGCCGACCCCCGAGATAGCGCAGCCGCCAGTACCGGCACAAGCACC
AGGTATTGCGGCACCGTTGGCTTCTCAGTGGGCGGGCTACTACCCAGGGT
ATAACTACAACAACGGCCATCCTCAGCAGTACCAGGCGTACCCGCCAACC
CCAAGCTATCAGGGGTACGTCCAAGATGCGCAGCAGCAGCAATTTGGGCA
ACAGGCTTATGCCCAGCAGTGGGCAGGGTATGCAACTGCTGTACCTCAAC
CTCAGCCGGTTGCTCCTCAAGCGTACCCAGCCCAGGCCCCTCACCTGCAA
GGTCAACCATATCTGCCGACCCCCGAGATAGCGCAGCCGCCAGTACCGGC
ACAAGCACCAGGTATTGCGGCACCGTTG
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