mRNA_Ecto-sp9_F_contig11162.1002.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11162.1002.1
Unique NamemRNA_Ecto-sp9_F_contig11162.1002.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11162.1002.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11162contigEcto-sp9_F_contig11162:2144..2759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11162.1002.1prot_Ecto-sp9_F_contig11162.1002.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11162 2174..2759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928357.2502522-UTR-Ecto-sp9_F_contig11162:2143..21731622928357.2502522-UTR-Ecto-sp9_F_contig11162:2143..2173Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11162 2144..2173 +
1692277844.6335795-UTR-Ecto-sp9_F_contig11162:2143..21731692277844.6335795-UTR-Ecto-sp9_F_contig11162:2143..2173Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11162 2144..2173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928357.2675602-CDS-Ecto-sp9_F_contig11162:2173..23651622928357.2675602-CDS-Ecto-sp9_F_contig11162:2173..2365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 2174..2365 +
1692277844.6438282-CDS-Ecto-sp9_F_contig11162:2173..23651692277844.6438282-CDS-Ecto-sp9_F_contig11162:2173..2365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 2174..2365 +
1622928357.2800171-CDS-Ecto-sp9_F_contig11162:2684..27591622928357.2800171-CDS-Ecto-sp9_F_contig11162:2684..2759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 2685..2759 +
1692277844.656804-CDS-Ecto-sp9_F_contig11162:2684..27591692277844.656804-CDS-Ecto-sp9_F_contig11162:2684..2759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11162 2685..2759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11162.1002.1

>prot_Ecto-sp9_F_contig11162.1002.1 ID=prot_Ecto-sp9_F_contig11162.1002.1|Name=mRNA_Ecto-sp9_F_contig11162.1002.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=89bp
MMRAADGDLDVEAWRQVDRATQALVPACAPGTLPTDPKHLDAMFVFATNN
WRTYYGEKPTGKKLARINAIHKQATSGDCTDTEWSTPFE
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mRNA from alignment at Ecto-sp9_F_contig11162:2144..2759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11162.1002.1 ID=mRNA_Ecto-sp9_F_contig11162.1002.1|Name=mRNA_Ecto-sp9_F_contig11162.1002.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11162:2144..2759+ (Ectocarpus species9 EcSCA_722f female)
GGCTTTCTTGCCCACTTGTTGTCACAGATCATGATGCGGGCAGCCGATGG
GGATCTCGACGTCGAGGCCTGGCGACAAGTAGATCGAGCAACACAAGCGC
TGGTTCCTGCCTGCGCGCCAGGAACCTTGCCCACGGACCCTAAGCATCTA
GATGCTATGTTCGTGTTTGCTACGAATAACTGGCGGACGTACTACGGAGA
AAAACCTACTGGAAAAAAATTGGTGAGAGTGTGTGGGGTTATGTAACGTT
CGTTACTTGCTGCACAGCGTGGCTCTCTCCGCAACATGTGCTATCTAGGT
GTCCTGAACTTTGCGCCACCCACGCCTTTGCAATACCCAGTTACACCAGT
ATAGCTATTCTGAACAGTGTACGCAGCTCTACTTTCGACGTTGCGCTGTT
TTGGTGCTTCAGCTGTTCTGCATACGTAGCTGTTCCCGGTTGGAGGATCA
CATTTATTGCAGACTACCGGGGAACCTTCTCTTTTCATTGTTAGAGACAC
GCCCACGCTCGTCTCTTTGTCCATTGGCCGCGCTACAACAGGCCCGCATC
AACGCGATACACAAGCAAGCTACGTCTGGCGACTGTACAGACACAGAATG
GTCGACACCTTTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11162:2144..2759+

>mRNA_Ecto-sp9_F_contig11162.1002.1 ID=mRNA_Ecto-sp9_F_contig11162.1002.1|Name=mRNA_Ecto-sp9_F_contig11162.1002.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11162:2144..2759+ (Ectocarpus species9 EcSCA_722f female)
ATGATGCGGGCAGCCGATGGGGATCTCGACGTCGAGGCCTGGCGACAAGT
AGATCGAGCAACACAAGCGCTGGTTCCTGCCTGCGCGCCAGGAACCTTGC
CCACGGACCCTAAGCATCTAGATGCTATGTTCGTGTTTGCTACGAATAAC
TGGCGGACGTACTACGGAGAAAAACCTACTGGAAAAAAATTGATGATGCG
GGCAGCCGATGGGGATCTCGACGTCGAGGCCTGGCGACAAGTAGATCGAG
CAACACAAGCGCTGGTTCCTGCCTGCGCGCCAGGAACCTTGCCCACGGAC
CCTAAGCATCTAGATGCTATGTTCGTGTTTGCTACGAATAACTGGCGGAC
GTACTACGGAGAAAAACCTACTGGAAAAAAATTGGCCCGCATCAACGCGA
TACACAAGCAAGCTACGTCTGGCGACTGTACAGACACAGAATGGTCGACA
CCTTTCGAGGCCCGCATCAACGCGATACACAAGCAAGCTACGTCTGGCGA
CTGTACAGACACAGAATGGTCGACACCTTTCGAG
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